Wall clock time and date at job start Mon Mar 30 2020 04:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.39814 * 119.77496 * 2 1 4 4 C 1.38861 * 120.19328 * 18.50375 * 3 2 1 5 5 C 1.38107 * 119.89746 * 179.97438 * 4 3 2 6 6 C 1.38298 * 120.08622 * 0.02562 * 5 4 3 7 7 C 1.38283 * 120.15402 * 0.02562 * 6 5 4 8 8 C 1.38098 * 120.00630 * 359.97245 * 7 6 5 9 9 C 1.50660 * 120.15039 * 179.97438 * 8 7 6 10 10 H 1.09001 * 109.46087 * 26.04813 * 9 8 7 11 11 N 1.46905 * 109.46163 * 266.07289 * 9 8 7 12 12 C 1.46901 * 110.99870 * 154.97753 * 11 9 8 13 13 C 1.50697 * 109.46943 * 180.02562 * 12 11 9 14 14 H 1.08000 * 120.00162 * 359.97438 * 13 12 11 15 15 C 1.37883 * 120.00023 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99532 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00003 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47043 * 89.99858 * 17 15 13 19 19 H 1.48494 * 109.47326 * 209.99769 * 17 15 13 20 20 H 1.48497 * 109.47436 * 330.00047 * 17 15 13 21 21 C 1.52910 * 109.52068 * 146.06155 * 9 8 7 22 22 C 1.34573 * 119.77306 * 180.02562 * 2 1 3 23 23 O 1.21291 * 119.61212 * 0.79631 * 22 2 1 24 24 H 1.09002 * 109.47062 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47106 * 299.97861 * 1 2 3 26 26 H 1.09000 * 109.47364 * 59.98143 * 1 2 3 27 27 H 1.08003 * 120.05384 * 359.92611 * 4 3 2 28 28 H 1.07994 * 119.95665 * 180.02562 * 5 4 3 29 29 H 1.08005 * 119.92343 * 180.02562 * 6 5 4 30 30 H 1.07997 * 119.98701 * 180.02562 * 7 6 5 31 31 H 1.00901 * 110.99869 * 31.02465 * 11 9 8 32 32 H 1.09004 * 109.47031 * 299.99620 * 12 11 9 33 33 H 1.08995 * 109.47111 * 59.99900 * 12 11 9 34 34 H 0.97001 * 119.99132 * 180.02562 * 16 15 13 35 35 H 1.08994 * 109.40225 * 168.70078 * 21 9 8 36 36 H 1.08998 * 109.39590 * 288.52150 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1593 1.2136 0.0000 4 6 1.5182 2.3849 0.3809 5 6 2.2100 3.5802 0.3792 6 6 3.5391 3.6114 -0.0018 7 6 4.1801 2.4468 -0.3826 8 6 3.4932 1.2488 -0.3827 9 6 4.1882 -0.0220 -0.7976 10 1 5.2589 0.0742 -0.6174 11 7 3.9522 -0.2645 -2.2272 12 6 5.0232 -1.0872 -2.8053 13 6 4.7477 -1.3139 -4.2694 14 1 3.8651 -0.8896 -4.7249 15 6 5.6219 -2.0638 -5.0274 16 7 6.6964 -2.5809 -4.4726 17 14 5.2801 -2.3453 -6.8421 18 1 5.9098 -1.2614 -7.6384 19 1 5.8451 -3.6550 -7.2549 20 1 3.8136 -2.3431 -7.0758 21 6 3.6379 -1.1942 0.0156 22 6 2.1332 -1.1681 -0.0005 23 8 1.5156 -2.2119 -0.0156 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5135 0.8902 26 1 -0.3634 0.5141 -0.8898 27 1 0.4799 2.3615 0.6773 28 1 1.7125 4.4917 0.6756 29 1 4.0778 4.5476 -0.0018 30 1 5.2182 2.4742 -0.6792 31 1 3.8527 0.6047 -2.7298 32 1 5.9779 -0.5737 -2.6908 33 1 5.0627 -2.0468 -2.2898 34 1 7.3116 -3.1081 -5.0060 35 1 3.9887 -2.1311 -0.4169 36 1 3.9885 -1.1169 1.0448 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037240376.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:07 Heat of formation + Delta-G solvation = -4.936173 kcal Electronic energy + Delta-G solvation = -19370.131356 eV Core-core repulsion = 16432.866725 eV Total energy + Delta-G solvation = -2937.264631 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.96808 -38.49964 -36.13943 -35.34610 -33.04888 -31.14889 -30.16252 -29.33533 -27.27547 -26.01262 -23.65369 -22.63882 -21.64139 -21.29921 -18.66082 -17.50385 -16.70737 -16.49178 -16.00258 -15.19383 -14.87437 -14.50295 -14.47877 -14.21664 -13.72027 -13.39468 -13.13782 -12.87179 -12.46872 -12.44439 -12.14934 -12.06227 -11.50401 -11.35770 -11.21385 -10.87332 -10.76412 -10.56903 -10.15211 -9.93811 -9.63058 -9.22147 -8.87658 -8.50247 -7.84301 -7.40064 -6.05462 -4.07178 1.28365 1.34820 2.82103 3.00015 3.31353 3.37712 3.42885 3.82551 4.42126 4.59780 4.77560 4.80100 5.00586 5.06325 5.24346 5.30434 5.31765 5.32998 5.43265 5.51557 5.62786 5.77411 5.88481 5.89996 5.97829 6.17093 6.22560 6.37853 6.52952 6.72677 6.91328 7.14331 7.33279 7.46384 7.73953 8.07025 8.23152 8.30212 8.51380 9.01023 9.57764 11.05596 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.021720 B = 0.005764 C = 0.005153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.844476 B = 4856.442099 C = 5432.744135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.555 5.555 3 C 0.183 3.817 4 C -0.161 4.161 5 C -0.091 4.091 6 C -0.148 4.148 7 C -0.078 4.078 8 C -0.119 4.119 9 C 0.126 3.874 10 H 0.063 0.937 11 N -0.679 5.679 12 C 0.194 3.806 13 C -0.514 4.514 14 H 0.062 0.938 15 C 0.057 3.943 16 N -0.897 5.897 17 Si 0.899 3.101 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.127 4.127 22 C 0.541 3.459 23 O -0.531 6.531 24 H 0.093 0.907 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.125 0.875 28 H 0.123 0.877 29 H 0.122 0.878 30 H 0.127 0.873 31 H 0.335 0.665 32 H -0.010 1.010 33 H 0.030 0.970 34 H 0.262 0.738 35 H 0.114 0.886 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.732 12.121 11.850 18.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.278 5.278 3 C 0.087 3.913 4 C -0.182 4.182 5 C -0.110 4.110 6 C -0.167 4.167 7 C -0.097 4.097 8 C -0.122 4.122 9 C 0.016 3.984 10 H 0.080 0.920 11 N -0.311 5.311 12 C 0.068 3.932 13 C -0.553 4.553 14 H 0.080 0.920 15 C -0.144 4.144 16 N -0.536 5.536 17 Si 0.727 3.273 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.168 4.168 22 C 0.332 3.668 23 O -0.406 6.406 24 H 0.112 0.888 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.143 0.857 28 H 0.141 0.859 29 H 0.140 0.860 30 H 0.145 0.855 31 H 0.153 0.847 32 H 0.007 0.993 33 H 0.048 0.952 34 H 0.071 0.929 35 H 0.132 0.868 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.368 10.752 11.896 18.087 hybrid contribution 0.618 0.508 -1.115 1.373 sum -7.749 11.260 10.780 17.409 Atomic orbital electron populations 1.21798 0.78637 1.04803 1.01642 1.45299 1.07174 1.04860 1.70478 1.17617 0.91280 0.85520 0.96873 1.20763 1.00615 0.91586 1.05264 1.20904 0.94420 0.96996 0.98700 1.21030 0.95062 0.98105 1.02523 1.20921 0.99913 0.91271 0.97599 1.19746 0.93211 0.96199 1.03058 1.20277 0.97242 0.88864 0.92007 0.91966 1.60868 1.49678 1.21771 0.98794 1.19654 0.86464 0.92359 0.94760 1.21137 1.08029 1.32464 0.93648 0.92027 1.24968 0.95007 0.95612 0.98855 1.69956 1.12470 1.34964 1.36250 0.86478 0.78566 0.77475 0.84793 1.20709 1.21189 1.19796 1.21792 0.90586 1.02866 1.01542 1.20643 0.90797 0.82121 0.73191 1.90676 1.70096 1.31449 1.48393 0.88836 0.91921 0.91510 0.85710 0.85893 0.86000 0.85483 0.84703 0.99250 0.95172 0.92870 0.86784 0.88751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.90 9.67 59.85 0.58 1.48 16 2 N -0.56 -8.56 3.09 -121.01 -0.37 -8.93 16 3 C 0.18 2.60 6.32 -83.77 -0.53 2.07 16 4 C -0.16 -1.85 9.34 -39.40 -0.37 -2.22 16 5 C -0.09 -0.92 10.04 -39.61 -0.40 -1.32 16 6 C -0.15 -1.58 10.04 -39.54 -0.40 -1.98 16 7 C -0.08 -0.98 9.69 -39.62 -0.38 -1.37 16 8 C -0.12 -1.76 4.89 -104.48 -0.51 -2.27 16 9 C 0.13 2.17 2.65 -68.93 -0.18 1.99 16 10 H 0.06 1.05 7.72 -51.93 -0.40 0.65 16 11 N -0.68 -14.37 6.17 -109.29 -0.67 -15.04 16 12 C 0.19 4.96 5.23 -4.98 -0.03 4.94 16 13 C -0.51 -14.57 9.32 -34.44 -0.32 -14.89 16 14 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 16 N -0.90 -26.66 13.29 55.43 0.74 -25.92 16 17 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 21 C -0.13 -2.17 5.66 -28.02 -0.16 -2.33 16 22 C 0.54 9.87 7.35 -11.17 -0.08 9.78 16 23 O -0.53 -11.20 16.35 5.55 0.09 -11.11 16 24 H 0.09 1.26 6.85 -51.93 -0.36 0.90 16 25 H 0.06 0.59 7.30 -51.93 -0.38 0.21 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.12 1.16 6.65 -52.48 -0.35 0.81 16 28 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 29 H 0.12 1.02 8.06 -52.48 -0.42 0.59 16 30 H 0.13 1.49 8.06 -52.49 -0.42 1.06 16 31 H 0.34 6.92 8.34 -39.29 -0.33 6.60 16 32 H -0.01 -0.27 8.06 -51.93 -0.42 -0.69 16 33 H 0.03 0.83 7.31 -51.93 -0.38 0.45 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.11 2.18 7.26 -51.93 -0.38 1.80 16 36 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 301.46 15.07 4.54 4.54 Total: -1.00 -32.50 301.46 -8.22 -40.72 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -4.65 Total: 3.45 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -2.88 Total: -4.58 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: -0.31 Total: -49.89 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.09 Total: -11.11 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.50 -8.22 -40.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037240376.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.781 kcal (2) G-P(sol) polarization free energy of solvation -32.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds