Wall clock time and date at job start Mon Mar 30 2020 04:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.39814 * 119.77496 * 2 1 4 4 C 1.38861 * 120.19328 * 18.50375 * 3 2 1 5 5 C 1.38107 * 119.89746 * 179.97438 * 4 3 2 6 6 C 1.38298 * 120.08622 * 0.02562 * 5 4 3 7 7 C 1.38283 * 120.15402 * 0.02562 * 6 5 4 8 8 C 1.38098 * 120.00630 * 359.97245 * 7 6 5 9 9 C 1.50660 * 120.15039 * 179.97438 * 8 7 6 10 10 H 1.09001 * 109.46087 * 26.04813 * 9 8 7 11 11 N 1.46905 * 109.46163 * 266.07289 * 9 8 7 12 12 C 1.46901 * 110.99870 * 154.97753 * 11 9 8 13 13 C 1.50697 * 109.46943 * 180.02562 * 12 11 9 14 14 H 1.08000 * 120.00162 * 359.97438 * 13 12 11 15 15 C 1.37883 * 120.00023 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99532 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00003 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47043 * 89.99858 * 17 15 13 19 19 H 1.48494 * 109.47326 * 209.99769 * 17 15 13 20 20 H 1.48497 * 109.47436 * 330.00047 * 17 15 13 21 21 C 1.52910 * 109.52068 * 146.06155 * 9 8 7 22 22 C 1.34573 * 119.77306 * 180.02562 * 2 1 3 23 23 O 1.21291 * 119.61212 * 0.79631 * 22 2 1 24 24 H 1.09002 * 109.47062 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47106 * 299.97861 * 1 2 3 26 26 H 1.09000 * 109.47364 * 59.98143 * 1 2 3 27 27 H 1.08003 * 120.05384 * 359.92611 * 4 3 2 28 28 H 1.07994 * 119.95665 * 180.02562 * 5 4 3 29 29 H 1.08005 * 119.92343 * 180.02562 * 6 5 4 30 30 H 1.07997 * 119.98701 * 180.02562 * 7 6 5 31 31 H 1.00901 * 110.99869 * 31.02465 * 11 9 8 32 32 H 1.09004 * 109.47031 * 299.99620 * 12 11 9 33 33 H 1.08995 * 109.47111 * 59.99900 * 12 11 9 34 34 H 0.97001 * 119.99132 * 180.02562 * 16 15 13 35 35 H 1.08994 * 109.40225 * 168.70078 * 21 9 8 36 36 H 1.08998 * 109.39590 * 288.52150 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1593 1.2136 0.0000 4 6 1.5182 2.3849 0.3809 5 6 2.2100 3.5802 0.3792 6 6 3.5391 3.6114 -0.0018 7 6 4.1801 2.4468 -0.3826 8 6 3.4932 1.2488 -0.3827 9 6 4.1882 -0.0220 -0.7976 10 1 5.2589 0.0742 -0.6174 11 7 3.9522 -0.2645 -2.2272 12 6 5.0232 -1.0872 -2.8053 13 6 4.7477 -1.3139 -4.2694 14 1 3.8651 -0.8896 -4.7249 15 6 5.6219 -2.0638 -5.0274 16 7 6.6964 -2.5809 -4.4726 17 14 5.2801 -2.3453 -6.8421 18 1 5.9098 -1.2614 -7.6384 19 1 5.8451 -3.6550 -7.2549 20 1 3.8136 -2.3431 -7.0758 21 6 3.6379 -1.1942 0.0156 22 6 2.1332 -1.1681 -0.0005 23 8 1.5156 -2.2119 -0.0156 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5135 0.8902 26 1 -0.3634 0.5141 -0.8898 27 1 0.4799 2.3615 0.6773 28 1 1.7125 4.4917 0.6756 29 1 4.0778 4.5476 -0.0018 30 1 5.2182 2.4742 -0.6792 31 1 3.8527 0.6047 -2.7298 32 1 5.9779 -0.5737 -2.6908 33 1 5.0627 -2.0468 -2.2898 34 1 7.3116 -3.1081 -5.0060 35 1 3.9887 -2.1311 -0.4169 36 1 3.9885 -1.1169 1.0448 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037240376.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:07 Heat of formation + Delta-G solvation = -26.956873 kcal Electronic energy + Delta-G solvation = -19371.086245 eV Core-core repulsion = 16432.866725 eV Total energy + Delta-G solvation = -2938.219520 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.16741 -39.69398 -37.66481 -36.52754 -35.03229 -32.79507 -31.18437 -30.44911 -28.83064 -27.57165 -25.07209 -23.79976 -23.31892 -22.55276 -19.84016 -18.80106 -18.49028 -17.79631 -17.44146 -16.76958 -16.33201 -15.83351 -15.78387 -15.30228 -15.08863 -14.76398 -14.57439 -14.37874 -13.90345 -13.66081 -13.51358 -13.17959 -13.08610 -13.01991 -12.66926 -12.58275 -12.25402 -12.13019 -11.72689 -11.36081 -11.23650 -10.97834 -10.67529 -9.86591 -9.19821 -8.86654 -8.24923 -6.35569 0.25996 0.41935 1.38182 1.40438 1.51791 1.53061 1.85021 2.37722 2.85523 3.08537 3.36276 3.47707 3.63649 3.85753 4.00483 4.17142 4.31710 4.36129 4.45048 4.48491 4.55617 4.65622 4.68274 4.81682 4.85308 5.04196 5.05129 5.18279 5.23094 5.47686 5.56837 5.63598 5.68804 5.96955 5.98877 6.27625 6.39323 6.63133 6.83845 6.91184 7.34850 8.86295 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.021720 B = 0.005764 C = 0.005153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.844476 B = 4856.442099 C = 5432.744135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.553 5.553 3 C 0.158 3.842 4 C -0.153 4.153 5 C -0.081 4.081 6 C -0.139 4.139 7 C -0.087 4.087 8 C -0.139 4.139 9 C 0.129 3.871 10 H 0.061 0.939 11 N -0.682 5.682 12 C 0.212 3.788 13 C -0.537 4.537 14 H 0.058 0.942 15 C 0.005 3.995 16 N -0.930 5.930 17 Si 0.970 3.030 18 H -0.267 1.267 19 H -0.281 1.281 20 H -0.270 1.270 21 C -0.128 4.128 22 C 0.533 3.467 23 O -0.574 6.574 24 H 0.075 0.925 25 H 0.099 0.901 26 H 0.078 0.922 27 H 0.151 0.849 28 H 0.162 0.838 29 H 0.151 0.849 30 H 0.129 0.871 31 H 0.338 0.662 32 H -0.029 1.029 33 H 0.000 1.000 34 H 0.266 0.734 35 H 0.083 0.917 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.984 15.137 12.079 21.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.275 5.275 3 C 0.063 3.937 4 C -0.174 4.174 5 C -0.099 4.099 6 C -0.158 4.158 7 C -0.106 4.106 8 C -0.142 4.142 9 C 0.020 3.980 10 H 0.079 0.921 11 N -0.313 5.313 12 C 0.085 3.915 13 C -0.575 4.575 14 H 0.077 0.923 15 C -0.194 4.194 16 N -0.570 5.570 17 Si 0.795 3.205 18 H -0.192 1.192 19 H -0.206 1.206 20 H -0.195 1.195 21 C -0.168 4.168 22 C 0.325 3.675 23 O -0.453 6.453 24 H 0.094 0.906 25 H 0.117 0.883 26 H 0.097 0.903 27 H 0.169 0.831 28 H 0.179 0.821 29 H 0.169 0.831 30 H 0.147 0.853 31 H 0.156 0.844 32 H -0.011 1.011 33 H 0.018 0.982 34 H 0.075 0.925 35 H 0.101 0.899 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.629 13.834 12.140 20.772 hybrid contribution 0.999 -0.285 -1.095 1.510 sum -8.629 13.549 11.044 19.494 Atomic orbital electron populations 1.22014 0.76862 1.04428 1.03949 1.45317 1.08371 1.04482 1.69373 1.17872 0.91236 0.85876 0.98687 1.21105 1.01783 0.90712 1.03771 1.21383 0.94063 0.97820 0.96645 1.21411 0.95553 0.98256 1.00573 1.21064 1.00247 0.91356 0.97915 1.19558 0.93892 0.95423 1.05301 1.20246 0.97686 0.90729 0.89373 0.92129 1.60694 1.47865 1.21685 1.01089 1.19238 0.86923 0.91558 0.93811 1.21490 1.08088 1.32872 0.95068 0.92339 1.25891 0.94653 0.95096 1.03765 1.70074 1.13353 1.35464 1.38142 0.85372 0.78470 0.77774 0.78924 1.19247 1.20629 1.19487 1.21755 0.90694 1.01335 1.03031 1.20742 0.91069 0.82630 0.73091 1.90643 1.70771 1.33016 1.50919 0.90639 0.88303 0.90339 0.83150 0.82066 0.83087 0.85283 0.84407 1.01131 0.98159 0.92547 0.89891 0.85777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.58 9.67 127.77 1.24 2.82 16 2 N -0.55 -16.70 3.09 -655.27 -2.02 -18.72 16 3 C 0.16 4.20 6.32 38.16 0.24 4.44 16 4 C -0.15 -2.88 9.34 22.39 0.21 -2.67 16 5 C -0.08 -1.22 10.04 22.25 0.22 -0.99 16 6 C -0.14 -2.39 10.04 22.29 0.22 -2.16 16 7 C -0.09 -2.02 9.69 22.25 0.22 -1.81 16 8 C -0.14 -3.99 4.89 -19.77 -0.10 -4.08 16 9 C 0.13 4.61 2.65 44.13 0.12 4.72 16 10 H 0.06 2.15 7.72 -2.39 -0.02 2.13 16 11 N -0.68 -30.02 6.17 -499.67 -3.08 -33.10 16 12 C 0.21 11.44 5.23 85.56 0.45 11.89 16 13 C -0.54 -31.32 9.32 25.60 0.24 -31.08 16 14 H 0.06 3.37 7.81 -2.91 -0.02 3.34 16 15 C 0.00 0.26 5.46 84.66 0.46 0.73 16 16 N -0.93 -56.61 13.29 21.45 0.28 -56.33 16 17 Si 0.97 45.26 29.54 68.60 2.03 47.28 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 20 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 21 C -0.13 -4.59 5.66 29.76 0.17 -4.42 16 22 C 0.53 20.08 7.35 87.63 0.64 20.72 16 23 O -0.57 -25.46 16.35 -3.06 -0.05 -25.51 16 24 H 0.07 2.04 6.85 -2.39 -0.02 2.02 16 25 H 0.10 1.54 7.30 -2.39 -0.02 1.53 16 26 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.15 2.03 6.65 -2.91 -0.02 2.01 16 28 H 0.16 1.29 8.06 -2.91 -0.02 1.26 16 29 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 30 H 0.13 2.88 8.06 -2.91 -0.02 2.85 16 31 H 0.34 14.33 8.34 -89.69 -0.75 13.58 16 32 H -0.03 -1.63 8.06 -2.39 -0.02 -1.65 16 33 H 0.00 0.02 7.31 -2.39 -0.02 0.00 16 34 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 35 H 0.08 3.47 7.26 -2.39 -0.02 3.45 16 36 H 0.12 3.57 8.14 -2.39 -0.02 3.55 16 Total: -1.00 -73.20 301.46 1.83 -71.37 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 0.34 Total: 16.91 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: 4.33 Total: -1.91 kcal Atomic # 7 Polarization: -103.33 SS G_CDS: -4.82 Total: -108.15 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -0.05 Total: -25.51 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -73.20 1.83 -71.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037240376.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.417 kcal (2) G-P(sol) polarization free energy of solvation -73.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds