Wall clock time and date at job start Mon Mar 30 2020 04:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.39817 * 119.77270 * 2 1 4 4 C 1.38867 * 120.19383 * 18.46799 * 3 2 1 5 5 C 1.38108 * 119.88823 * 180.02562 * 4 3 2 6 6 C 1.38298 * 120.09339 * 0.02562 * 5 4 3 7 7 C 1.38277 * 120.15184 * 0.02562 * 6 5 4 8 8 C 1.38090 * 120.02160 * 359.94671 * 7 6 5 9 9 C 1.50659 * 120.18080 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.46046 * 266.13516 * 9 8 7 11 11 N 1.46897 * 109.46296 * 26.09982 * 9 8 7 12 12 C 1.46900 * 111.00575 * 205.05645 * 11 9 8 13 13 C 1.50695 * 109.47276 * 179.97438 * 12 11 9 14 14 H 1.07996 * 120.00237 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99856 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99980 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99981 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47244 * 0.02562 * 17 15 13 19 19 H 1.48494 * 109.47045 * 120.00588 * 17 15 13 20 20 H 1.48500 * 109.47029 * 240.00560 * 17 15 13 21 21 C 1.52897 * 109.52910 * 146.11744 * 9 8 7 22 22 C 1.34562 * 119.77025 * 179.97438 * 2 1 3 23 23 O 1.21290 * 119.62020 * 0.80512 * 22 2 1 24 24 H 1.09002 * 109.46759 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47004 * 300.01376 * 1 2 3 26 26 H 1.08992 * 109.47001 * 60.01888 * 1 2 3 27 27 H 1.08000 * 120.05365 * 0.02562 * 4 3 2 28 28 H 1.08005 * 119.95188 * 180.02562 * 5 4 3 29 29 H 1.08006 * 119.92498 * 179.97438 * 6 5 4 30 30 H 1.08000 * 119.99194 * 179.97438 * 7 6 5 31 31 H 1.00904 * 111.00208 * 81.09853 * 11 9 8 32 32 H 1.08995 * 109.46865 * 300.00310 * 12 11 9 33 33 H 1.09006 * 109.47013 * 59.99928 * 12 11 9 34 34 H 0.97000 * 120.00010 * 179.97438 * 16 15 13 35 35 H 1.09005 * 109.40114 * 288.44786 * 21 9 8 36 36 H 1.09001 * 109.40264 * 168.71049 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1593 1.2136 0.0000 4 6 1.5180 2.3851 0.3802 5 6 2.2097 3.5805 0.3774 6 6 3.5387 3.6117 -0.0039 7 6 4.1798 2.4470 -0.3840 8 6 3.4936 1.2487 -0.3826 9 6 4.1884 -0.0224 -0.7967 10 1 4.0136 -0.2029 -1.8573 11 7 5.6314 0.1071 -0.5538 12 6 6.3960 -0.7836 -1.4370 13 6 7.8685 -0.6228 -1.1598 14 1 8.2029 0.0712 -0.4030 15 6 8.7888 -1.3626 -1.8718 16 7 8.3815 -2.2082 -2.7931 17 14 10.6141 -1.1639 -1.5277 18 1 10.8085 -0.1582 -0.4525 19 1 11.1809 -2.4664 -1.0951 20 1 11.3037 -0.7093 -2.7618 21 6 3.6380 -1.1941 0.0169 22 6 2.1332 -1.1680 0.0005 23 8 1.5157 -2.2119 -0.0138 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5140 0.8898 26 1 -0.3633 0.5135 -0.8901 27 1 0.4800 2.3615 0.6776 28 1 1.7119 4.4922 0.6733 29 1 4.0769 4.5481 -0.0055 30 1 5.2176 2.4744 -0.6816 31 1 5.8521 -0.0678 0.4151 32 1 6.1021 -1.8170 -1.2535 33 1 6.1922 -0.5270 -2.4766 34 1 9.0290 -2.7284 -3.2942 35 1 3.9895 -1.1172 1.0459 36 1 3.9889 -2.1314 -0.4150 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037240378.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:09 Heat of formation + Delta-G solvation = -4.542838 kcal Electronic energy + Delta-G solvation = -19175.895094 eV Core-core repulsion = 16238.647520 eV Total energy + Delta-G solvation = -2937.247574 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.05273 -38.56545 -36.34511 -35.44704 -33.07437 -31.15777 -30.12319 -29.31777 -27.40618 -25.83329 -23.73416 -22.66248 -21.90275 -20.85742 -18.92710 -17.61030 -16.96606 -16.40961 -16.14404 -15.33464 -14.72929 -14.55270 -14.31027 -13.97523 -13.89655 -13.69842 -13.21593 -12.78652 -12.58799 -12.40504 -12.24068 -12.21478 -11.50148 -11.32789 -11.13920 -10.87758 -10.78858 -10.60274 -10.22702 -10.13463 -9.79264 -9.26059 -8.66527 -8.54942 -7.84830 -7.50800 -6.08826 -4.11502 1.31104 1.50738 2.62225 2.80503 3.28303 3.36055 3.40205 3.92129 4.36757 4.47186 4.74172 4.83668 5.04014 5.10880 5.17479 5.26909 5.27784 5.33174 5.37528 5.46968 5.58977 5.65087 5.80641 5.98998 6.09195 6.14653 6.23455 6.45481 6.71398 6.80784 7.00446 7.13349 7.30310 7.34881 7.68997 7.98236 8.02553 8.21353 8.45547 8.97259 9.53981 11.02150 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.024506 B = 0.005318 C = 0.004488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.293037 B = 5264.040661 C = 6237.352003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.557 5.557 3 C 0.155 3.845 4 C -0.162 4.162 5 C -0.097 4.097 6 C -0.150 4.150 7 C -0.052 4.052 8 C -0.106 4.106 9 C 0.130 3.870 10 H 0.091 0.909 11 N -0.673 5.673 12 C 0.191 3.809 13 C -0.516 4.516 14 H 0.064 0.936 15 C 0.057 3.943 16 N -0.896 5.896 17 Si 0.899 3.101 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.284 1.284 21 C -0.166 4.166 22 C 0.525 3.475 23 O -0.534 6.534 24 H 0.092 0.908 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.122 0.878 28 H 0.121 0.879 29 H 0.122 0.878 30 H 0.148 0.852 31 H 0.335 0.665 32 H -0.009 1.009 33 H 0.030 0.970 34 H 0.262 0.738 35 H 0.101 0.899 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.727 9.624 6.279 17.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.281 5.281 3 C 0.060 3.940 4 C -0.182 4.182 5 C -0.116 4.116 6 C -0.169 4.169 7 C -0.071 4.071 8 C -0.109 4.109 9 C 0.018 3.982 10 H 0.109 0.891 11 N -0.302 5.302 12 C 0.065 3.935 13 C -0.555 4.555 14 H 0.082 0.918 15 C -0.145 4.145 16 N -0.535 5.535 17 Si 0.727 3.273 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.207 4.207 22 C 0.315 3.685 23 O -0.410 6.410 24 H 0.111 0.889 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.140 0.860 28 H 0.139 0.861 29 H 0.140 0.860 30 H 0.166 0.834 31 H 0.152 0.848 32 H 0.009 0.991 33 H 0.049 0.951 34 H 0.071 0.929 35 H 0.120 0.880 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -13.933 9.365 5.711 17.733 hybrid contribution 0.704 -0.824 0.499 1.193 sum -13.228 8.542 6.210 16.927 Atomic orbital electron populations 1.21818 0.78561 1.04685 1.01945 1.45367 1.07300 1.04952 1.70504 1.17719 0.91729 0.85247 0.99287 1.20657 1.00388 0.91578 1.05612 1.20905 0.94654 0.96859 0.99183 1.21196 0.94840 0.98600 1.02225 1.21131 1.00951 0.90129 0.94885 1.19754 0.91830 0.96900 1.02456 1.20240 0.90530 0.88269 0.99157 0.89134 1.60771 1.00704 1.58445 1.10279 1.19665 0.92539 0.89057 0.92251 1.21168 0.90561 1.23018 1.20728 0.91778 1.24984 0.99345 0.95083 0.95064 1.69966 1.34355 1.25624 1.23561 0.86425 0.84841 0.77865 0.78180 1.19626 1.21100 1.20993 1.22580 0.90264 1.03780 1.04085 1.20902 0.91023 0.82368 0.74200 1.90689 1.70173 1.31452 1.48638 0.88919 0.91640 0.91483 0.86011 0.86122 0.86036 0.83402 0.84760 0.99098 0.95145 0.92866 0.88046 0.87161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.78 9.67 59.85 0.58 1.35 16 2 N -0.56 -7.83 3.09 -121.00 -0.37 -8.21 16 3 C 0.15 2.13 6.32 -83.76 -0.53 1.60 16 4 C -0.16 -1.85 9.34 -39.40 -0.37 -2.22 16 5 C -0.10 -1.04 10.04 -39.61 -0.40 -1.44 16 6 C -0.15 -1.77 10.04 -39.54 -0.40 -2.16 16 7 C -0.05 -0.75 9.32 -39.62 -0.37 -1.12 16 8 C -0.11 -1.60 5.57 -104.47 -0.58 -2.19 16 9 C 0.13 2.19 2.73 -68.94 -0.19 2.01 16 10 H 0.09 1.66 7.80 -51.93 -0.40 1.26 16 11 N -0.67 -13.01 5.01 -109.30 -0.55 -13.56 16 12 C 0.19 4.68 5.24 -4.98 -0.03 4.65 16 13 C -0.52 -13.89 9.32 -34.44 -0.32 -14.22 16 14 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 15 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 16 N -0.90 -26.13 13.29 55.43 0.74 -25.40 16 17 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 18 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 C -0.17 -2.68 5.36 -28.03 -0.15 -2.83 16 22 C 0.53 8.63 7.46 -11.17 -0.08 8.54 16 23 O -0.53 -10.11 16.35 5.55 0.09 -10.02 16 24 H 0.09 1.08 6.85 -51.93 -0.36 0.73 16 25 H 0.07 0.56 7.30 -51.93 -0.38 0.18 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.12 1.12 6.65 -52.49 -0.35 0.77 16 28 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 29 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 30 H 0.15 2.28 7.30 -52.49 -0.38 1.90 16 31 H 0.33 6.20 8.31 -39.29 -0.33 5.88 16 32 H -0.01 -0.23 7.68 -51.93 -0.40 -0.63 16 33 H 0.03 0.81 8.06 -51.93 -0.42 0.39 16 34 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.10 1.51 7.89 -51.93 -0.41 1.10 16 36 H 0.11 1.92 7.77 -51.93 -0.40 1.51 16 LS Contribution 300.46 15.07 4.53 4.53 Total: -1.00 -30.50 300.46 -8.16 -38.66 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -4.64 Total: 4.41 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -2.93 Total: -6.52 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: -0.19 Total: -47.16 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.09 Total: -10.02 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.50 -8.16 -38.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037240378.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.120 kcal (2) G-P(sol) polarization free energy of solvation -30.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds