Wall clock time and date at job start Mon Mar 30 2020 04:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.39817 * 119.77270 * 2 1 4 4 C 1.38867 * 120.19383 * 18.46799 * 3 2 1 5 5 C 1.38108 * 119.88823 * 180.02562 * 4 3 2 6 6 C 1.38298 * 120.09339 * 0.02562 * 5 4 3 7 7 C 1.38277 * 120.15184 * 0.02562 * 6 5 4 8 8 C 1.38090 * 120.02160 * 359.94671 * 7 6 5 9 9 C 1.50659 * 120.18080 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.46046 * 266.13516 * 9 8 7 11 11 N 1.46897 * 109.46296 * 26.09982 * 9 8 7 12 12 C 1.46900 * 111.00575 * 205.05645 * 11 9 8 13 13 C 1.50695 * 109.47276 * 179.97438 * 12 11 9 14 14 H 1.07996 * 120.00237 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99856 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99980 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99981 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47244 * 0.02562 * 17 15 13 19 19 H 1.48494 * 109.47045 * 120.00588 * 17 15 13 20 20 H 1.48500 * 109.47029 * 240.00560 * 17 15 13 21 21 C 1.52897 * 109.52910 * 146.11744 * 9 8 7 22 22 C 1.34562 * 119.77025 * 179.97438 * 2 1 3 23 23 O 1.21290 * 119.62020 * 0.80512 * 22 2 1 24 24 H 1.09002 * 109.46759 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47004 * 300.01376 * 1 2 3 26 26 H 1.08992 * 109.47001 * 60.01888 * 1 2 3 27 27 H 1.08000 * 120.05365 * 0.02562 * 4 3 2 28 28 H 1.08005 * 119.95188 * 180.02562 * 5 4 3 29 29 H 1.08006 * 119.92498 * 179.97438 * 6 5 4 30 30 H 1.08000 * 119.99194 * 179.97438 * 7 6 5 31 31 H 1.00904 * 111.00208 * 81.09853 * 11 9 8 32 32 H 1.08995 * 109.46865 * 300.00310 * 12 11 9 33 33 H 1.09006 * 109.47013 * 59.99928 * 12 11 9 34 34 H 0.97000 * 120.00010 * 179.97438 * 16 15 13 35 35 H 1.09005 * 109.40114 * 288.44786 * 21 9 8 36 36 H 1.09001 * 109.40264 * 168.71049 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1593 1.2136 0.0000 4 6 1.5180 2.3851 0.3802 5 6 2.2097 3.5805 0.3774 6 6 3.5387 3.6117 -0.0039 7 6 4.1798 2.4470 -0.3840 8 6 3.4936 1.2487 -0.3826 9 6 4.1884 -0.0224 -0.7967 10 1 4.0136 -0.2029 -1.8573 11 7 5.6314 0.1071 -0.5538 12 6 6.3960 -0.7836 -1.4370 13 6 7.8685 -0.6228 -1.1598 14 1 8.2029 0.0712 -0.4030 15 6 8.7888 -1.3626 -1.8718 16 7 8.3815 -2.2082 -2.7931 17 14 10.6141 -1.1639 -1.5277 18 1 10.8085 -0.1582 -0.4525 19 1 11.1809 -2.4664 -1.0951 20 1 11.3037 -0.7093 -2.7618 21 6 3.6380 -1.1941 0.0169 22 6 2.1332 -1.1680 0.0005 23 8 1.5157 -2.2119 -0.0138 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5140 0.8898 26 1 -0.3633 0.5135 -0.8901 27 1 0.4800 2.3615 0.6776 28 1 1.7119 4.4922 0.6733 29 1 4.0769 4.5481 -0.0055 30 1 5.2176 2.4744 -0.6816 31 1 5.8521 -0.0678 0.4151 32 1 6.1021 -1.8170 -1.2535 33 1 6.1922 -0.5270 -2.4766 34 1 9.0290 -2.7284 -3.2942 35 1 3.9895 -1.1172 1.0459 36 1 3.9889 -2.1314 -0.4150 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037240378.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:09 Heat of formation + Delta-G solvation = -23.972762 kcal Electronic energy + Delta-G solvation = -19176.737639 eV Core-core repulsion = 16238.647520 eV Total energy + Delta-G solvation = -2938.090119 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.23422 -39.73708 -37.83593 -36.57927 -35.01651 -32.75628 -31.15398 -30.44117 -28.91546 -27.31637 -25.07643 -23.80245 -23.64964 -22.13727 -20.08520 -18.80871 -18.61127 -17.88551 -17.39699 -16.80575 -16.36189 -15.76145 -15.52249 -15.41165 -15.09828 -14.85240 -14.47446 -14.30788 -14.13712 -13.80096 -13.46967 -13.33878 -13.13448 -12.75398 -12.63818 -12.55916 -12.18314 -12.08191 -11.85679 -11.39832 -11.27535 -11.06648 -10.66826 -9.68350 -9.22877 -8.89717 -8.21837 -6.32648 0.24125 0.51805 1.39554 1.43106 1.43707 1.57257 1.71417 2.40773 2.91297 3.12510 3.19895 3.41406 3.65751 3.79150 3.98838 4.10775 4.25390 4.36272 4.39970 4.51795 4.57661 4.64195 4.67648 4.79652 4.87491 5.06998 5.14437 5.20281 5.26294 5.49517 5.59301 5.72880 5.77903 5.96607 6.01407 6.23642 6.35804 6.63852 6.76318 6.87849 7.38426 8.89988 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.024506 B = 0.005318 C = 0.004488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.293037 B = 5264.040661 C = 6237.352003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.553 5.553 3 C 0.139 3.861 4 C -0.150 4.150 5 C -0.085 4.085 6 C -0.144 4.144 7 C -0.069 4.069 8 C -0.126 4.126 9 C 0.136 3.864 10 H 0.065 0.935 11 N -0.662 5.662 12 C 0.208 3.792 13 C -0.530 4.530 14 H 0.069 0.931 15 C 0.001 3.999 16 N -0.936 5.936 17 Si 0.972 3.028 18 H -0.259 1.259 19 H -0.281 1.281 20 H -0.280 1.280 21 C -0.161 4.161 22 C 0.523 3.477 23 O -0.567 6.567 24 H 0.079 0.921 25 H 0.096 0.904 26 H 0.085 0.915 27 H 0.154 0.846 28 H 0.161 0.839 29 H 0.145 0.855 30 H 0.128 0.872 31 H 0.341 0.659 32 H -0.034 1.034 33 H 0.000 1.000 34 H 0.264 0.736 35 H 0.114 0.886 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.683 12.406 7.871 20.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.276 5.276 3 C 0.045 3.955 4 C -0.170 4.170 5 C -0.104 4.104 6 C -0.163 4.163 7 C -0.088 4.088 8 C -0.129 4.129 9 C 0.025 3.975 10 H 0.084 0.916 11 N -0.291 5.291 12 C 0.080 3.920 13 C -0.569 4.569 14 H 0.088 0.912 15 C -0.197 4.197 16 N -0.576 5.576 17 Si 0.797 3.203 18 H -0.183 1.183 19 H -0.207 1.207 20 H -0.206 1.206 21 C -0.202 4.202 22 C 0.313 3.687 23 O -0.446 6.446 24 H 0.098 0.902 25 H 0.115 0.885 26 H 0.104 0.896 27 H 0.171 0.829 28 H 0.178 0.822 29 H 0.163 0.837 30 H 0.146 0.854 31 H 0.160 0.840 32 H -0.016 1.016 33 H 0.018 0.982 34 H 0.073 0.927 35 H 0.132 0.868 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.915 12.200 7.319 20.612 hybrid contribution 0.910 -1.576 0.009 1.819 sum -14.005 10.624 7.328 19.045 Atomic orbital electron populations 1.22086 0.76306 1.04708 1.04348 1.45398 1.08672 1.04247 1.69253 1.17868 0.91253 0.85935 1.00395 1.21043 1.01721 0.90522 1.03706 1.21359 0.93922 0.98004 0.97069 1.21476 0.95661 0.98329 1.00794 1.21052 1.00390 0.91041 0.96341 1.19548 0.92847 0.95821 1.04655 1.20102 0.89108 0.90297 0.98018 0.91648 1.60627 1.02051 1.56670 1.09768 1.19270 0.92676 0.88461 0.91596 1.21543 0.91687 1.22928 1.20705 0.91238 1.25935 1.04408 0.94627 0.94719 1.70103 1.36090 1.26675 1.24721 0.85287 0.78652 0.78080 0.78288 1.18320 1.20684 1.20615 1.22436 0.91069 1.02306 1.04408 1.20745 0.90767 0.82904 0.74251 1.90669 1.70556 1.32674 1.50661 0.90205 0.88545 0.89611 0.82877 0.82182 0.83717 0.85412 0.84032 1.01606 0.98184 0.92713 0.86751 0.89350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.27 9.67 127.77 1.24 2.50 16 2 N -0.55 -14.89 3.09 -655.23 -2.02 -16.91 16 3 C 0.14 3.57 6.32 38.16 0.24 3.81 16 4 C -0.15 -2.77 9.34 22.39 0.21 -2.56 16 5 C -0.09 -1.40 10.04 22.25 0.22 -1.17 16 6 C -0.14 -2.93 10.04 22.29 0.22 -2.71 16 7 C -0.07 -1.93 9.32 22.24 0.21 -1.72 16 8 C -0.13 -3.77 5.57 -19.77 -0.11 -3.88 16 9 C 0.14 4.86 2.73 44.12 0.12 4.98 16 10 H 0.07 2.62 7.80 -2.39 -0.02 2.60 16 11 N -0.66 -26.85 5.01 -499.72 -2.50 -29.35 16 12 C 0.21 10.76 5.24 85.56 0.45 11.21 16 13 C -0.53 -29.28 9.32 25.60 0.24 -29.04 16 14 H 0.07 3.68 7.81 -2.91 -0.02 3.66 16 15 C 0.00 0.07 5.46 84.66 0.46 0.53 16 16 N -0.94 -56.27 13.29 21.45 0.28 -55.98 16 17 Si 0.97 43.64 29.54 68.60 2.03 45.67 16 18 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 19 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 20 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 21 C -0.16 -5.49 5.36 29.75 0.16 -5.33 16 22 C 0.52 17.58 7.46 87.63 0.65 18.23 16 23 O -0.57 -22.13 16.35 -3.06 -0.05 -22.18 16 24 H 0.08 1.78 6.85 -2.39 -0.02 1.76 16 25 H 0.10 1.26 7.30 -2.39 -0.02 1.25 16 26 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.15 1.89 6.65 -2.91 -0.02 1.87 16 28 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 29 H 0.15 2.26 8.06 -2.91 -0.02 2.23 16 30 H 0.13 4.02 7.30 -2.91 -0.02 3.99 16 31 H 0.34 13.06 8.31 -89.69 -0.74 12.32 16 32 H -0.03 -1.89 7.68 -2.39 -0.02 -1.91 16 33 H 0.00 0.00 8.06 -2.38 -0.02 -0.02 16 34 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 35 H 0.11 3.53 7.89 -2.38 -0.02 3.51 16 36 H 0.09 3.37 7.77 -2.39 -0.02 3.35 16 Total: -1.00 -68.38 300.46 2.39 -65.99 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: 0.35 Total: 17.90 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: 4.31 Total: -5.14 kcal Atomic # 7 Polarization: -98.00 SS G_CDS: -4.24 Total: -102.25 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.05 Total: -22.18 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -68.38 2.39 -65.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037240378.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.016 kcal (2) G-P(sol) polarization free energy of solvation -68.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds