Wall clock time and date at job start Mon Mar 30 2020 04:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86804 * 119.99677 * 2 1 4 4 H 1.48502 * 109.47020 * 240.00068 * 3 2 1 5 5 H 1.48500 * 109.47230 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46922 * 120.00090 * 3 2 1 7 7 C 1.37874 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99604 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00186 * 359.97438 * 7 2 1 10 10 N 1.46490 * 109.47136 * 179.97438 * 9 7 2 11 11 C 1.34779 * 120.00224 * 103.68567 * 10 9 7 12 12 O 1.21548 * 120.00598 * 186.18916 * 11 10 9 13 13 C 1.47870 * 119.99443 * 6.18358 * 11 10 9 14 14 C 1.39619 * 120.10972 * 326.56607 * 13 11 10 15 15 C 1.37984 * 120.00095 * 180.02562 * 14 13 11 16 16 C 1.38240 * 120.22882 * 0.02680 * 15 14 13 17 17 C 1.38981 * 120.22521 * 359.97264 * 16 15 14 18 18 N 1.39705 * 120.00965 * 179.97438 * 17 16 15 19 19 C 1.38684 * 119.98720 * 0.25736 * 17 16 15 20 20 C 1.46501 * 120.00093 * 283.68080 * 10 9 7 21 21 C 1.53003 * 117.49955 * 196.37628 * 20 10 9 22 22 C 1.53007 * 117.49478 * 127.71733 * 20 10 9 23 23 H 0.97001 * 120.00066 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.46753 * 60.00180 * 9 7 2 25 25 H 1.08995 * 109.47013 * 300.00485 * 9 7 2 26 26 H 1.07997 * 119.99811 * 359.97438 * 14 13 11 27 27 H 1.07997 * 119.88126 * 180.02562 * 15 14 13 28 28 H 1.08002 * 119.89112 * 179.97438 * 16 15 14 29 29 H 0.96995 * 119.99978 * 0.02562 * 18 17 16 30 30 H 0.97005 * 120.00308 * 180.02562 * 18 17 16 31 31 H 1.07999 * 120.11524 * 179.72142 * 19 17 16 32 32 H 1.08993 * 115.54961 * 342.04723 * 20 10 9 33 33 H 1.09002 * 117.49994 * 0.02562 * 21 20 10 34 34 H 1.08998 * 117.50226 * 145.02498 * 21 20 10 35 35 H 1.09001 * 117.49586 * 214.97470 * 22 20 10 36 36 H 1.08996 * 117.49914 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 7 2.2032 -3.6125 -0.0018 11 6 2.4321 -4.3047 1.1318 12 8 3.3018 -5.1534 1.1606 13 6 1.6253 -4.0316 2.3405 14 6 1.1698 -2.7377 2.6009 15 6 0.4175 -2.4853 3.7298 16 6 0.1124 -3.5098 4.6063 17 6 0.5609 -4.8013 4.3563 18 7 0.2504 -5.8332 5.2454 19 6 1.3217 -5.0644 3.2270 20 6 2.9063 -3.9737 -1.2352 21 6 3.5790 -5.3469 -1.2887 22 6 4.4314 -4.0806 -1.1735 23 1 -0.4850 0.8400 0.0004 24 1 0.6242 -2.5567 -0.8904 25 1 0.6248 -2.5571 0.8896 26 1 1.4071 -1.9344 1.9193 27 1 0.0659 -1.4838 3.9291 28 1 -0.4765 -3.3060 5.4884 29 1 -0.2786 -5.6484 6.0371 30 1 0.5637 -6.7345 5.0709 31 1 1.6750 -6.0664 3.0330 32 1 2.4653 -3.5932 -2.1564 33 1 3.4981 -5.9817 -0.4063 34 1 3.5810 -5.8695 -2.2452 35 1 4.9936 -3.7707 -2.0544 36 1 4.9115 -3.8818 -0.2154 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038099442.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:31 Heat of formation + Delta-G solvation = 48.865624 kcal Electronic energy + Delta-G solvation = -19551.175483 eV Core-core repulsion = 16616.243874 eV Total energy + Delta-G solvation = -2934.931610 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.99754 -38.32652 -35.68264 -34.91144 -33.47787 -32.20542 -30.37010 -28.24732 -27.17601 -23.91420 -22.87563 -21.81515 -21.61443 -21.40095 -18.80340 -16.83011 -16.54341 -16.37074 -16.00286 -15.49018 -14.88976 -14.46996 -14.29948 -13.87849 -13.44753 -13.13521 -12.79832 -12.72586 -12.35877 -12.21953 -11.97841 -11.22944 -10.94681 -10.93554 -10.70848 -10.56394 -10.27139 -10.24073 -9.93519 -9.65272 -9.40582 -8.82347 -8.58020 -8.36187 -7.49143 -7.09669 -6.22211 -4.30564 1.54081 2.10837 3.23743 3.28448 3.31551 3.46877 3.78419 4.14874 4.29977 4.43825 4.65290 5.08742 5.16166 5.40929 5.49108 5.57032 5.70844 5.75665 5.95973 6.08766 6.24573 6.26695 6.28787 6.41486 6.59146 6.63899 6.82727 6.94207 7.13190 7.15366 7.24823 7.35658 7.62770 7.72269 7.79376 7.95651 7.99664 8.34482 8.77049 8.99716 9.36734 10.82717 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.014576 B = 0.008841 C = 0.005905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.451563 B = 3166.402930 C = 4740.219440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.068 3.932 3 Si 0.896 3.104 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.539 4.539 8 H 0.064 0.936 9 C 0.206 3.794 10 N -0.558 5.558 11 C 0.556 3.444 12 O -0.563 6.563 13 C -0.087 4.087 14 C -0.138 4.138 15 C -0.087 4.087 16 C -0.179 4.179 17 C 0.186 3.814 18 N -0.886 5.886 19 C -0.146 4.146 20 C 0.092 3.908 21 C -0.204 4.204 22 C -0.187 4.187 23 H 0.267 0.733 24 H 0.030 0.970 25 H 0.078 0.922 26 H 0.187 0.813 27 H 0.124 0.876 28 H 0.114 0.886 29 H 0.393 0.607 30 H 0.394 0.606 31 H 0.121 0.879 32 H 0.124 0.876 33 H 0.133 0.867 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.464 -7.018 5.526 8.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.136 4.136 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.577 4.577 8 H 0.083 0.917 9 C 0.087 3.913 10 N -0.285 5.285 11 C 0.346 3.654 12 O -0.446 6.446 13 C -0.091 4.091 14 C -0.157 4.157 15 C -0.106 4.106 16 C -0.202 4.202 17 C 0.084 3.916 18 N -0.427 5.427 19 C -0.169 4.169 20 C -0.013 4.013 21 C -0.242 4.242 22 C -0.226 4.226 23 H 0.077 0.923 24 H 0.048 0.952 25 H 0.095 0.905 26 H 0.203 0.797 27 H 0.142 0.858 28 H 0.132 0.868 29 H 0.221 0.779 30 H 0.222 0.778 31 H 0.139 0.861 32 H 0.142 0.858 33 H 0.150 0.850 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.212 -7.242 5.464 9.074 hybrid contribution 0.263 0.825 0.143 0.878 sum 0.051 -6.417 5.607 8.522 Atomic orbital electron populations 1.69928 1.05913 1.27601 1.48771 1.24958 0.94875 0.99262 0.94522 0.86571 0.79625 0.82444 0.79020 1.20050 1.21085 1.19921 1.21411 0.93906 0.90182 1.52222 0.91748 1.20402 0.88073 0.82333 1.00476 1.47536 1.41985 1.32211 1.06784 1.18397 0.83048 0.80766 0.83234 1.90512 1.34098 1.35887 1.84058 1.19695 0.99635 0.94485 0.95246 1.22730 0.96861 0.98219 0.97939 1.20927 0.97601 0.98475 0.93590 1.20698 1.05908 0.91785 1.01842 1.17521 0.95163 0.88570 0.90309 1.42307 1.63572 1.09223 1.27563 1.20466 1.02590 0.99213 0.94634 1.21471 0.91627 0.99359 0.88846 1.23806 1.04146 0.92400 1.03835 1.23119 0.94495 1.02379 1.02607 0.92287 0.95195 0.90467 0.79654 0.85845 0.86785 0.77912 0.77839 0.86112 0.85790 0.84953 0.90178 0.89471 0.88844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.38 13.29 55.43 0.74 -22.65 16 2 C 0.07 1.74 5.45 -17.82 -0.10 1.64 16 3 Si 0.90 20.10 29.54 -169.99 -5.02 15.08 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.34 7.11 56.52 0.40 -5.93 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.54 -13.73 7.61 -34.44 -0.26 -13.99 16 8 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 9 C 0.21 4.92 4.71 -5.20 -0.02 4.89 16 10 N -0.56 -12.32 2.86 -168.57 -0.48 -12.81 16 11 C 0.56 12.27 7.23 -12.32 -0.09 12.18 16 12 O -0.56 -12.81 12.52 5.32 0.07 -12.74 16 13 C -0.09 -1.79 5.52 -104.99 -0.58 -2.37 16 14 C -0.14 -2.85 7.42 -39.16 -0.29 -3.14 16 15 C -0.09 -1.55 10.02 -39.67 -0.40 -1.95 16 16 C -0.18 -2.78 9.89 -39.31 -0.39 -3.17 16 17 C 0.19 2.88 6.75 -83.83 -0.57 2.31 16 18 N -0.89 -9.90 9.09 32.39 0.29 -9.61 16 19 C -0.15 -2.60 9.45 -38.96 -0.37 -2.97 16 20 C 0.09 1.83 6.53 -67.92 -0.44 1.39 16 21 C -0.20 -3.67 9.63 -26.69 -0.26 -3.93 16 22 C -0.19 -3.48 9.88 -26.69 -0.26 -3.74 16 23 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 24 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.08 1.87 3.84 -52.13 -0.20 1.67 16 26 H 0.19 4.32 3.79 -52.49 -0.20 4.12 16 27 H 0.12 2.02 8.06 -52.49 -0.42 1.59 16 28 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 29 H 0.39 3.47 8.84 -40.82 -0.36 3.11 16 30 H 0.39 3.79 8.84 -40.82 -0.36 3.43 16 31 H 0.12 2.06 7.97 -52.49 -0.42 1.64 16 32 H 0.12 2.32 8.14 -51.93 -0.42 1.90 16 33 H 0.13 2.65 5.22 -52.10 -0.27 2.38 16 34 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.09 1.92 7.59 -51.93 -0.39 1.53 16 LS Contribution 299.58 15.07 4.51 4.51 Total: -1.00 -28.12 299.58 -8.20 -36.32 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -4.29 Total: 14.74 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -4.03 Total: -12.85 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: 0.55 Total: -45.06 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.07 Total: -12.74 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.12 -8.20 -36.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038099442.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.185 kcal (2) G-P(sol) polarization free energy of solvation -28.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds