Wall clock time and date at job start Mon Mar 30 2020 04:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86804 * 119.99677 * 2 1 4 4 H 1.48502 * 109.47020 * 240.00068 * 3 2 1 5 5 H 1.48500 * 109.47230 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46922 * 120.00090 * 3 2 1 7 7 C 1.37874 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99604 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00186 * 359.97438 * 7 2 1 10 10 N 1.46490 * 109.47136 * 179.97438 * 9 7 2 11 11 C 1.34779 * 120.00224 * 103.68567 * 10 9 7 12 12 O 1.21548 * 120.00598 * 186.18916 * 11 10 9 13 13 C 1.47870 * 119.99443 * 6.18358 * 11 10 9 14 14 C 1.39619 * 120.10972 * 326.56607 * 13 11 10 15 15 C 1.37984 * 120.00095 * 180.02562 * 14 13 11 16 16 C 1.38240 * 120.22882 * 0.02680 * 15 14 13 17 17 C 1.38981 * 120.22521 * 359.97264 * 16 15 14 18 18 N 1.39705 * 120.00965 * 179.97438 * 17 16 15 19 19 C 1.38684 * 119.98720 * 0.25736 * 17 16 15 20 20 C 1.46501 * 120.00093 * 283.68080 * 10 9 7 21 21 C 1.53003 * 117.49955 * 196.37628 * 20 10 9 22 22 C 1.53007 * 117.49478 * 127.71733 * 20 10 9 23 23 H 0.97001 * 120.00066 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.46753 * 60.00180 * 9 7 2 25 25 H 1.08995 * 109.47013 * 300.00485 * 9 7 2 26 26 H 1.07997 * 119.99811 * 359.97438 * 14 13 11 27 27 H 1.07997 * 119.88126 * 180.02562 * 15 14 13 28 28 H 1.08002 * 119.89112 * 179.97438 * 16 15 14 29 29 H 0.96995 * 119.99978 * 0.02562 * 18 17 16 30 30 H 0.97005 * 120.00308 * 180.02562 * 18 17 16 31 31 H 1.07999 * 120.11524 * 179.72142 * 19 17 16 32 32 H 1.08993 * 115.54961 * 342.04723 * 20 10 9 33 33 H 1.09002 * 117.49994 * 0.02562 * 21 20 10 34 34 H 1.08998 * 117.50226 * 145.02498 * 21 20 10 35 35 H 1.09001 * 117.49586 * 214.97470 * 22 20 10 36 36 H 1.08996 * 117.49914 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 7 2.2032 -3.6125 -0.0018 11 6 2.4321 -4.3047 1.1318 12 8 3.3018 -5.1534 1.1606 13 6 1.6253 -4.0316 2.3405 14 6 1.1698 -2.7377 2.6009 15 6 0.4175 -2.4853 3.7298 16 6 0.1124 -3.5098 4.6063 17 6 0.5609 -4.8013 4.3563 18 7 0.2504 -5.8332 5.2454 19 6 1.3217 -5.0644 3.2270 20 6 2.9063 -3.9737 -1.2352 21 6 3.5790 -5.3469 -1.2887 22 6 4.4314 -4.0806 -1.1735 23 1 -0.4850 0.8400 0.0004 24 1 0.6242 -2.5567 -0.8904 25 1 0.6248 -2.5571 0.8896 26 1 1.4071 -1.9344 1.9193 27 1 0.0659 -1.4838 3.9291 28 1 -0.4765 -3.3060 5.4884 29 1 -0.2786 -5.6484 6.0371 30 1 0.5637 -6.7345 5.0709 31 1 1.6750 -6.0664 3.0330 32 1 2.4653 -3.5932 -2.1564 33 1 3.4981 -5.9817 -0.4063 34 1 3.5810 -5.8695 -2.2452 35 1 4.9936 -3.7707 -2.0544 36 1 4.9115 -3.8818 -0.2154 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038099442.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:30 Heat of formation + Delta-G solvation = 32.097347 kcal Electronic energy + Delta-G solvation = -19551.902610 eV Core-core repulsion = 16616.243874 eV Total energy + Delta-G solvation = -2935.658737 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.59463 -39.72632 -37.32701 -36.45882 -34.93571 -34.02073 -31.78665 -29.62933 -28.98676 -25.48631 -24.69212 -23.29291 -23.06578 -22.84502 -20.33652 -18.68913 -18.08123 -17.69279 -17.43404 -16.99397 -16.48220 -16.22830 -15.93043 -15.32519 -14.84747 -14.55526 -14.42350 -14.20940 -13.97248 -13.93445 -13.54343 -12.98571 -12.71355 -12.48650 -12.26191 -12.14299 -12.01455 -11.71410 -11.52870 -11.34370 -11.02663 -10.62815 -10.32656 -9.81518 -9.20547 -8.33141 -8.18132 -6.33129 0.10250 0.71749 1.44259 1.45093 1.52724 1.86312 2.19012 2.43522 2.98090 3.06685 3.11118 3.14341 3.63734 4.00697 4.07625 4.16067 4.23206 4.32950 4.59824 4.68717 4.73971 4.82799 4.93929 4.98833 5.05100 5.12081 5.26167 5.32991 5.40952 5.68414 5.70648 5.76739 5.91111 5.99692 6.06121 6.55225 6.63767 6.81083 7.09938 7.26331 7.38981 8.85860 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.014576 B = 0.008841 C = 0.005905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.451563 B = 3166.402930 C = 4740.219440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.031 3.969 3 Si 0.952 3.048 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.273 1.273 7 C -0.544 4.544 8 H 0.049 0.951 9 C 0.219 3.781 10 N -0.564 5.564 11 C 0.547 3.453 12 O -0.577 6.577 13 C -0.109 4.109 14 C -0.167 4.167 15 C -0.090 4.090 16 C -0.170 4.170 17 C 0.202 3.798 18 N -0.865 5.865 19 C -0.157 4.157 20 C 0.063 3.937 21 C -0.184 4.184 22 C -0.183 4.183 23 H 0.270 0.730 24 H 0.008 0.992 25 H 0.077 0.923 26 H 0.155 0.845 27 H 0.134 0.866 28 H 0.153 0.847 29 H 0.410 0.590 30 H 0.405 0.595 31 H 0.125 0.875 32 H 0.132 0.868 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.786 -7.523 6.771 10.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.170 4.170 3 Si 0.778 3.222 4 H -0.200 1.200 5 H -0.203 1.203 6 H -0.198 1.198 7 C -0.583 4.583 8 H 0.068 0.932 9 C 0.100 3.900 10 N -0.291 5.291 11 C 0.338 3.662 12 O -0.461 6.461 13 C -0.113 4.113 14 C -0.187 4.187 15 C -0.109 4.109 16 C -0.193 4.193 17 C 0.097 3.903 18 N -0.407 5.407 19 C -0.181 4.181 20 C -0.042 4.042 21 C -0.221 4.221 22 C -0.221 4.221 23 H 0.079 0.921 24 H 0.026 0.974 25 H 0.094 0.906 26 H 0.172 0.828 27 H 0.152 0.848 28 H 0.171 0.829 29 H 0.240 0.760 30 H 0.234 0.766 31 H 0.143 0.857 32 H 0.150 0.850 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.539 -7.784 6.734 10.307 hybrid contribution 0.339 0.884 -0.148 0.959 sum -0.200 -6.900 6.586 9.540 Atomic orbital electron populations 1.70006 1.06934 1.28364 1.49382 1.25561 0.95550 1.01834 0.94097 0.85696 0.78559 0.79170 0.78816 1.19951 1.20267 1.19835 1.21446 0.93168 0.91283 1.52360 0.93227 1.20130 0.88106 0.82527 0.99268 1.47534 1.41920 1.31831 1.07770 1.18772 0.83156 0.80475 0.83771 1.90493 1.34703 1.36460 1.84471 1.19700 1.00734 0.95343 0.95474 1.22409 0.99439 0.97508 0.99299 1.21078 0.96886 0.99845 0.93055 1.21018 1.05156 0.90934 1.02214 1.17565 0.93420 0.89625 0.89727 1.42258 1.62631 1.08789 1.27003 1.20544 1.03507 0.98739 0.95280 1.21782 0.92502 1.01473 0.88442 1.23752 1.02292 0.91382 1.04688 1.23122 0.93631 1.02854 1.02513 0.92072 0.97352 0.90592 0.82779 0.84841 0.82944 0.75958 0.76584 0.85697 0.85031 0.86932 0.86706 0.86613 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.82 13.29 21.45 0.28 -48.54 16 2 C 0.03 1.63 5.45 84.65 0.46 2.09 16 3 Si 0.95 41.55 29.54 68.60 2.03 43.58 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.54 -28.69 7.61 25.60 0.19 -28.49 16 8 H 0.05 2.71 7.81 -2.91 -0.02 2.68 16 9 C 0.22 10.95 4.71 85.64 0.40 11.36 16 10 N -0.56 -25.88 2.86 -805.52 -2.30 -28.18 16 11 C 0.55 25.03 7.23 86.79 0.63 25.66 16 12 O -0.58 -27.01 12.52 -3.87 -0.05 -27.06 16 13 C -0.11 -4.58 5.52 -20.10 -0.11 -4.69 16 14 C -0.17 -7.07 7.42 22.54 0.17 -6.90 16 15 C -0.09 -3.13 10.02 22.21 0.22 -2.91 16 16 C -0.17 -4.80 9.89 22.45 0.22 -4.58 16 17 C 0.20 5.71 6.75 38.17 0.26 5.96 16 18 N -0.87 -16.12 9.09 -51.45 -0.47 -16.59 16 19 C -0.16 -5.50 9.45 22.67 0.21 -5.29 16 20 C 0.06 2.52 6.53 44.99 0.29 2.81 16 21 C -0.18 -6.49 9.63 30.62 0.29 -6.20 16 22 C -0.18 -6.76 9.88 30.62 0.30 -6.46 16 23 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 24 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 25 H 0.08 3.87 3.84 -2.58 -0.01 3.86 16 26 H 0.16 7.54 3.79 -2.91 -0.01 7.53 16 27 H 0.13 4.26 8.06 -2.91 -0.02 4.24 16 28 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 29 H 0.41 5.37 8.84 -92.71 -0.82 4.55 16 30 H 0.40 6.37 8.84 -92.70 -0.82 5.55 16 31 H 0.13 4.18 7.97 -2.91 -0.02 4.15 16 32 H 0.13 4.99 8.14 -2.39 -0.02 4.97 16 33 H 0.11 4.53 5.22 -5.10 -0.03 4.50 16 34 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 35 H 0.12 3.56 8.14 -2.39 -0.02 3.54 16 36 H 0.07 2.86 7.59 -2.39 -0.02 2.84 16 Total: -1.00 -62.06 299.58 2.52 -59.54 By element: Atomic # 1 Polarization: 35.40 SS G_CDS: -0.53 Total: 34.88 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: 3.55 Total: -17.63 kcal Atomic # 7 Polarization: -90.82 SS G_CDS: -2.48 Total: -93.31 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.05 Total: -27.06 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Total: -62.06 2.52 -59.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038099442.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.636 kcal (2) G-P(sol) polarization free energy of solvation -62.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds