Wall clock time and date at job start Mon Mar 30 2020 04:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38353 * 119.45832 * 2 1 4 4 C 1.38360 * 119.30186 * 180.02562 * 3 2 1 5 5 C 1.40027 * 118.28601 * 359.75101 * 4 3 2 6 6 C 1.47837 * 120.55415 * 180.24289 * 5 4 3 7 7 O 1.21550 * 120.00740 * 329.97737 * 6 5 4 8 8 N 1.34786 * 119.99507 * 149.97806 * 6 5 4 9 9 C 1.46492 * 119.99913 * 5.78899 * 8 6 5 10 10 C 1.50704 * 109.46976 * 99.27885 * 9 8 6 11 11 H 1.08000 * 120.00224 * 359.97438 * 10 9 8 12 12 C 1.37882 * 119.99994 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99948 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00097 * 179.97438 * 12 10 9 15 15 H 1.48493 * 109.46890 * 60.00082 * 14 12 10 16 16 H 1.48500 * 109.46988 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46750 * 300.00304 * 14 12 10 18 18 C 1.46500 * 119.99557 * 185.78680 * 8 6 5 19 19 C 1.52997 * 117.50026 * 16.24115 * 18 8 6 20 20 C 1.52995 * 117.50203 * 307.57658 * 18 8 6 21 21 C 1.39520 * 118.88428 * 0.47281 * 5 4 3 22 22 N 1.31697 * 120.56596 * 359.51558 * 21 5 4 23 23 H 1.09006 * 109.46564 * 270.01989 * 1 2 3 24 24 H 1.08998 * 109.47523 * 30.01510 * 1 2 3 25 25 H 1.08997 * 109.47228 * 150.02141 * 1 2 3 26 26 H 1.08002 * 120.34978 * 0.02884 * 3 2 1 27 27 H 1.07999 * 120.85208 * 179.97438 * 4 3 2 28 28 H 1.09000 * 109.47314 * 219.27308 * 9 8 6 29 29 H 1.08995 * 109.47538 * 339.27662 * 9 8 6 30 30 H 0.97000 * 120.00027 * 179.97438 * 13 12 10 31 31 H 1.09000 * 115.54591 * 161.90177 * 18 8 6 32 32 H 1.09002 * 117.50048 * 359.97438 * 19 18 8 33 33 H 1.08999 * 117.50260 * 145.02212 * 19 18 8 34 34 H 1.09000 * 117.50061 * 214.98031 * 20 18 8 35 35 H 1.09001 * 117.50102 * 359.97438 * 20 18 8 36 36 H 1.07999 * 119.71761 * 179.79736 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2047 0.0000 4 6 3.5710 1.2009 -0.0005 5 6 4.2312 -0.0340 0.0043 6 6 5.7082 -0.0965 0.0094 7 8 6.3559 0.7872 -0.5170 8 7 6.3368 -1.1336 0.5977 9 6 5.5596 -2.2603 1.1198 10 6 5.5863 -3.3925 0.1256 11 1 6.1276 -3.2835 -0.8026 12 6 4.9196 -4.5676 0.4009 13 7 4.2600 -4.7002 1.5309 14 14 4.9520 -5.9708 -0.8319 15 1 6.3558 -6.3991 -1.0573 16 1 4.1643 -7.1129 -0.3025 17 1 4.3611 -5.5153 -2.1159 18 6 7.7971 -1.1339 0.7150 19 6 8.5225 0.1976 0.5111 20 6 8.6082 -0.8930 -0.5596 21 6 3.4716 -1.2043 -0.0007 22 7 2.1558 -1.1487 -0.0001 23 1 -0.3633 0.0004 1.0278 24 1 -0.3634 0.8898 -0.5140 25 1 -0.3633 -0.8901 -0.5135 26 1 1.6443 2.1382 0.0005 27 1 4.1274 2.1265 -0.0010 28 1 5.9927 -2.5945 2.0626 29 1 4.5292 -1.9457 1.2846 30 1 3.7907 -5.5267 1.7244 31 1 8.2094 -1.8241 1.4511 32 1 7.9133 1.0739 0.2893 33 1 9.4123 0.3833 1.1126 34 1 9.5544 -1.4243 -0.6621 35 1 8.0555 -0.7346 -1.4856 36 1 3.9669 -2.1640 -0.0003 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042359090.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:58 Heat of formation + Delta-G solvation = 40.340881 kcal Electronic energy + Delta-G solvation = -19605.102703 eV Core-core repulsion = 16669.801433 eV Total energy + Delta-G solvation = -2935.301270 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.93302 -40.42427 -37.43648 -36.40714 -34.35690 -33.51673 -33.14900 -29.33293 -28.91707 -25.27445 -24.61968 -24.21204 -23.24729 -22.74261 -20.55501 -18.77532 -18.18659 -17.85321 -17.06527 -16.61442 -16.43888 -16.15904 -15.83984 -15.25246 -14.86724 -14.57629 -14.26814 -14.13193 -14.00447 -13.57083 -13.21096 -13.04755 -12.96878 -12.75711 -12.48091 -12.28455 -12.16132 -11.93439 -11.52843 -11.20624 -10.89486 -10.69014 -10.66654 -10.21374 -9.75638 -9.28451 -8.26249 -6.43509 -0.22915 0.31243 1.41254 1.42925 1.50088 1.74068 2.09653 2.38279 2.82109 3.02367 3.08546 3.37480 3.66900 3.83105 3.98575 4.02494 4.11609 4.17628 4.22363 4.44761 4.67739 4.75550 4.82164 4.83178 4.86204 4.92869 5.05498 5.09516 5.13896 5.16714 5.31610 5.40397 5.62370 5.78038 5.86201 5.93691 6.43929 6.71422 7.04997 7.17519 7.30007 8.77162 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.012528 B = 0.010271 C = 0.006098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.522766 B = 2725.523022 C = 4590.788417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.127 3.873 3 C -0.180 4.180 4 C -0.026 4.026 5 C -0.221 4.221 6 C 0.557 3.443 7 O -0.571 6.571 8 N -0.564 5.564 9 C 0.226 3.774 10 C -0.554 4.554 11 H 0.055 0.945 12 C 0.033 3.967 13 N -0.903 5.903 14 Si 0.954 3.046 15 H -0.268 1.268 16 H -0.278 1.278 17 H -0.275 1.275 18 C 0.061 3.939 19 C -0.183 4.183 20 C -0.182 4.182 21 C 0.109 3.891 22 N -0.520 5.520 23 H 0.092 0.908 24 H 0.108 0.892 25 H 0.069 0.931 26 H 0.182 0.818 27 H 0.155 0.845 28 H 0.020 0.980 29 H 0.055 0.945 30 H 0.272 0.728 31 H 0.135 0.865 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.068 0.932 36 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.751 9.482 -0.916 9.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.011 4.011 3 C -0.199 4.199 4 C -0.052 4.052 5 C -0.226 4.226 6 C 0.347 3.653 7 O -0.454 6.454 8 N -0.291 5.291 9 C 0.106 3.894 10 C -0.592 4.592 11 H 0.073 0.927 12 C -0.170 4.170 13 N -0.540 5.540 14 Si 0.779 3.221 15 H -0.193 1.193 16 H -0.202 1.202 17 H -0.200 1.200 18 C -0.043 4.043 19 C -0.220 4.220 20 C -0.221 4.221 21 C -0.047 4.047 22 N -0.231 5.231 23 H 0.110 0.890 24 H 0.127 0.873 25 H 0.088 0.912 26 H 0.200 0.800 27 H 0.172 0.828 28 H 0.038 0.962 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.153 0.847 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.087 0.913 36 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -3.013 8.990 -1.031 9.538 hybrid contribution 0.659 -0.500 -0.425 0.930 sum -2.354 8.490 -1.455 8.930 Atomic orbital electron populations 1.20867 0.85910 1.04667 1.04285 1.22425 0.99290 0.88467 0.90878 1.22242 0.93558 1.00473 1.03642 1.21859 0.95230 0.96686 0.91412 1.21055 0.94243 0.96635 1.10707 1.18347 0.87453 0.81359 0.78133 1.90506 1.66801 1.40864 1.47255 1.47508 1.06304 1.19483 1.55787 1.19958 0.92375 0.82878 0.94175 1.21455 1.33729 0.99282 1.04686 0.92662 1.25630 0.94061 1.00377 0.96933 1.69989 1.31930 1.27967 1.24159 0.85659 0.78567 0.78662 0.79217 1.19316 1.20248 1.19991 1.21823 0.78773 1.02116 1.01578 1.23783 1.02114 0.94292 1.01802 1.23134 1.01827 1.03698 0.93393 1.25003 0.89711 1.01010 0.88939 1.67801 1.09839 1.30586 1.14847 0.88958 0.87320 0.91158 0.80032 0.82779 0.96226 0.92745 0.91890 0.84718 0.86749 0.86621 0.86516 0.91336 0.78645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.12 10.16 71.24 0.72 -1.40 16 2 C 0.13 3.98 6.78 42.57 0.29 4.27 16 3 C -0.18 -4.84 9.72 22.33 0.22 -4.63 16 4 C -0.03 -0.84 9.74 22.73 0.22 -0.62 16 5 C -0.22 -9.20 5.58 -19.99 -0.11 -9.31 16 6 C 0.56 24.58 7.28 86.78 0.63 25.21 16 7 O -0.57 -25.37 12.53 -3.87 -0.05 -25.42 16 8 N -0.56 -25.09 2.84 -805.56 -2.28 -27.37 16 9 C 0.23 11.16 4.69 85.64 0.40 11.56 16 10 C -0.55 -28.99 7.49 25.60 0.19 -28.80 16 11 H 0.06 2.97 7.81 -2.91 -0.02 2.94 16 12 C 0.03 1.74 5.36 84.66 0.45 2.19 16 13 N -0.90 -49.36 13.29 21.45 0.28 -49.08 16 14 Si 0.95 42.05 29.54 68.60 2.03 44.08 16 15 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 16 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 17 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 18 C 0.06 2.36 6.60 44.99 0.30 2.65 16 19 C -0.18 -6.11 9.63 30.62 0.29 -5.81 16 20 C -0.18 -6.41 9.88 30.62 0.30 -6.11 16 21 C 0.11 4.92 8.66 85.02 0.74 5.66 16 22 N -0.52 -21.62 10.25 -182.82 -1.87 -23.50 16 23 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 24 H 0.11 1.50 8.07 -2.39 -0.02 1.48 16 25 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.18 3.04 8.06 -2.91 -0.02 3.02 16 27 H 0.15 4.40 7.99 -2.91 -0.02 4.38 16 28 H 0.02 1.02 8.13 -2.39 -0.02 1.00 16 29 H 0.06 2.83 4.05 -2.39 -0.01 2.82 16 30 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 31 H 0.14 4.82 8.14 -2.39 -0.02 4.80 16 32 H 0.11 4.36 5.20 -6.38 -0.03 4.32 16 33 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 34 H 0.12 3.40 8.14 -2.39 -0.02 3.38 16 35 H 0.07 2.76 7.61 -2.39 -0.02 2.74 16 36 H 0.20 10.07 3.18 -2.91 -0.01 10.06 16 Total: -1.00 -62.96 300.46 3.83 -59.13 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: 1.07 Total: 27.27 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: 4.65 Total: -5.12 kcal Atomic # 7 Polarization: -96.07 SS G_CDS: -3.87 Total: -99.94 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -0.05 Total: -25.42 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -62.96 3.83 -59.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042359090.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.474 kcal (2) G-P(sol) polarization free energy of solvation -62.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds