Wall clock time and date at job start Mon Mar 30 2020 05:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47500 * 2 1 4 4 N 1.46904 * 109.46906 * 240.00003 * 2 1 3 5 5 C 1.53001 * 109.47029 * 120.00263 * 2 1 3 6 6 H 1.08995 * 109.47309 * 59.99973 * 5 2 1 7 7 C 1.50702 * 109.47177 * 180.02562 * 5 2 1 8 8 C 1.38228 * 119.61934 * 124.99867 * 7 5 2 9 9 C 1.38627 * 119.15774 * 179.97438 * 8 7 5 10 10 C 1.38670 * 118.42579 * 359.97438 * 9 8 7 11 11 C 1.38189 * 119.16151 * 359.97438 * 10 9 8 12 12 N 1.31854 * 119.61451 * 304.72240 * 7 5 2 13 13 N 1.46502 * 109.46978 * 299.99856 * 5 2 1 14 14 C 1.36932 * 120.00023 * 124.39040 * 13 5 2 15 15 H 1.08003 * 120.00230 * 220.62570 * 14 13 5 16 16 C 1.38811 * 119.99985 * 40.62344 * 14 13 5 17 17 N 1.31622 * 120.00240 * 5.26440 * 16 14 13 18 18 Si 1.86801 * 119.99899 * 185.25972 * 16 14 13 19 19 H 1.48494 * 109.47232 * 60.00170 * 18 16 14 20 20 H 1.48506 * 109.47040 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47244 * 299.99799 * 18 16 14 22 22 C 1.46501 * 119.99969 * 304.38885 * 13 5 2 23 23 C 1.47202 * 109.47245 * 96.54178 * 22 13 5 24 24 N 3.76337 * 62.14855 * 33.14038 * 2 1 3 25 25 H 1.09002 * 109.47022 * 300.00035 * 1 2 3 26 26 H 1.08998 * 109.47043 * 59.99698 * 1 2 3 27 27 H 1.08995 * 109.47097 * 179.97438 * 1 2 3 28 28 H 1.00904 * 110.99417 * 180.02562 * 4 2 1 29 29 H 1.00893 * 111.00335 * 303.95146 * 4 2 1 30 30 H 1.08000 * 120.41883 * 359.97438 * 8 7 5 31 31 H 1.08007 * 120.78741 * 180.02562 * 9 8 7 32 32 H 1.07995 * 120.42288 * 180.02562 * 10 9 8 33 33 H 1.08001 * 119.61759 * 180.02562 * 11 10 9 34 34 H 0.97002 * 120.00115 * 179.97438 * 17 16 14 35 35 H 1.09007 * 109.47030 * 336.54037 * 22 13 5 36 36 H 1.08998 * 109.47107 * 216.54675 * 22 13 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0400 -0.7213 1.2492 6 1 1.6767 -1.7489 1.2492 7 6 3.5470 -0.7208 1.2496 8 6 4.2297 -0.2129 2.3389 9 6 5.6160 -0.2176 2.3293 10 6 6.2666 -0.7358 1.2198 11 6 5.5170 -1.2273 0.1681 12 7 4.1990 -1.2098 0.2131 13 7 1.5516 -0.0307 2.4454 14 6 0.8401 -0.7195 3.3911 15 1 -0.0185 -0.2621 3.8602 16 6 1.2224 -2.0056 3.7470 17 7 2.3268 -2.5243 3.2533 18 14 0.1694 -3.0002 4.9265 19 1 -1.1880 -3.1759 4.3506 20 1 0.7909 -4.3316 5.1426 21 1 0.0680 -2.2844 6.2236 22 6 1.8246 1.3968 2.6298 23 6 0.6659 2.1810 2.1722 24 7 -0.2282 2.7862 1.8191 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 3.0283 -0.7063 -1.2225 29 1 1.6442 -1.6273 -1.2559 30 1 3.6900 0.1826 3.1867 31 1 6.1759 0.1723 3.1666 32 1 7.3456 -0.7558 1.1784 33 1 6.0161 -1.6329 -0.6995 34 1 2.5941 -3.4229 3.5023 35 1 2.7044 1.6763 2.0501 36 1 2.0059 1.5986 3.6855 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043338947.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:47 Heat of formation + Delta-G solvation = 96.123970 kcal Electronic energy + Delta-G solvation = -20295.449088 eV Core-core repulsion = 17394.859505 eV Total energy + Delta-G solvation = -2900.589583 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.133 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.81032 -37.34152 -35.42960 -34.14688 -31.84557 -31.53562 -30.47374 -28.17658 -27.18436 -25.94207 -22.96455 -22.48104 -21.51319 -19.48130 -17.68021 -16.92267 -16.09260 -15.52831 -15.21480 -14.89288 -14.78886 -14.07992 -13.97170 -13.41083 -13.19638 -12.94074 -12.72523 -12.41216 -12.24971 -11.91428 -11.47862 -11.30275 -11.19901 -11.05794 -10.85735 -10.75932 -10.56938 -10.40149 -10.25892 -10.08146 -9.16330 -8.96957 -8.74674 -8.19943 -7.84650 -6.97389 -6.09650 -3.75103 1.88884 1.96554 3.24670 3.29678 3.31371 3.46889 3.55051 4.28709 4.52333 4.78971 4.97442 5.17549 5.22381 5.36759 5.48607 5.58918 5.70344 5.87861 5.94959 5.98246 6.07645 6.21609 6.23138 6.46441 6.46745 6.65100 6.71511 6.82881 6.97325 7.01417 7.18503 7.48487 7.58726 7.95086 8.17967 8.33283 8.38424 8.67432 8.88767 9.41692 9.96162 10.95284 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.014347 B = 0.010633 C = 0.008102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.105994 B = 2632.719325 C = 3455.090052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.078 3.922 3 H 0.058 0.942 4 N -0.845 5.845 5 C 0.208 3.792 6 H 0.115 0.885 7 C 0.170 3.830 8 C -0.125 4.125 9 C -0.090 4.090 10 C -0.199 4.199 11 C 0.086 3.914 12 N -0.500 5.500 13 N -0.561 5.561 14 C -0.282 4.282 15 H 0.068 0.932 16 C 0.030 3.970 17 N -0.884 5.884 18 Si 0.907 3.093 19 H -0.280 1.280 20 H -0.289 1.289 21 H -0.279 1.279 22 C 0.216 3.784 23 C 0.205 3.795 24 N -0.475 5.475 25 H 0.066 0.934 26 H 0.042 0.958 27 H 0.047 0.953 28 H 0.354 0.646 29 H 0.330 0.670 30 H 0.143 0.857 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.142 0.858 34 H 0.260 0.740 35 H 0.084 0.916 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.980 2.246 -2.018 7.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.036 4.036 3 H 0.076 0.924 4 N -0.381 5.381 5 C 0.098 3.902 6 H 0.133 0.867 7 C 0.031 3.969 8 C -0.145 4.145 9 C -0.116 4.116 10 C -0.219 4.219 11 C -0.070 4.070 12 N -0.212 5.212 13 N -0.281 5.281 14 C -0.411 4.411 15 H 0.085 0.915 16 C -0.172 4.172 17 N -0.524 5.524 18 Si 0.735 3.265 19 H -0.206 1.206 20 H -0.215 1.215 21 H -0.205 1.205 22 C 0.085 3.915 23 C -0.115 4.115 24 N -0.154 5.154 25 H 0.085 0.915 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.175 0.825 29 H 0.141 0.859 30 H 0.161 0.839 31 H 0.138 0.862 32 H 0.136 0.864 33 H 0.159 0.841 34 H 0.070 0.930 35 H 0.102 0.898 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.940 3.190 -3.613 6.902 hybrid contribution 0.954 -1.430 2.331 2.896 sum 5.894 1.760 -1.282 6.283 Atomic orbital electron populations 1.21703 0.94687 1.01439 1.01115 1.21836 0.95452 0.97336 0.88967 0.92383 1.59414 1.16559 1.22803 1.39292 1.20175 0.85563 0.99140 0.85315 0.86720 1.22068 0.97972 0.88832 0.88058 1.22022 0.93374 0.99323 0.99798 1.21518 0.95122 0.97617 0.97339 1.21824 1.00259 1.03649 0.96138 1.22467 0.89996 0.96912 0.97636 1.67073 1.09451 1.16857 1.27798 1.43667 1.62578 1.01742 1.20063 1.18994 1.07302 0.98038 1.16797 0.91479 1.25349 0.95580 0.98918 0.97397 1.69934 1.21818 1.16149 1.44522 0.86330 0.79909 0.79129 0.81116 1.20635 1.21523 1.20465 1.18700 0.87689 0.84531 1.00550 1.31495 0.95640 0.92286 0.92099 1.81005 1.11835 1.11828 1.10752 0.91468 0.93880 0.93349 0.82538 0.85916 0.83889 0.86221 0.86384 0.84093 0.93004 0.89812 0.88606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 9.08 37.16 0.34 -2.22 16 2 C 0.08 1.48 2.50 -67.71 -0.17 1.31 16 3 H 0.06 1.14 7.09 -51.93 -0.37 0.77 16 4 N -0.85 -15.24 9.09 -4.66 -0.04 -15.28 16 5 C 0.21 4.23 1.42 -69.08 -0.10 4.13 16 6 H 0.12 2.77 6.47 -51.93 -0.34 2.43 16 7 C 0.17 3.29 5.12 -82.59 -0.42 2.87 16 8 C -0.13 -2.30 7.69 -39.44 -0.30 -2.60 16 9 C -0.09 -1.42 10.18 -39.28 -0.40 -1.82 16 10 C -0.20 -2.91 10.11 -39.44 -0.40 -3.31 16 11 C 0.09 1.35 11.18 -17.55 -0.20 1.16 16 12 N -0.50 -9.15 7.15 -9.47 -0.07 -9.22 16 13 N -0.56 -11.45 0.88 -170.29 -0.15 -11.60 16 14 C -0.28 -6.53 9.44 -15.06 -0.14 -6.67 16 15 H 0.07 1.59 7.83 -52.48 -0.41 1.18 16 16 C 0.03 0.72 5.10 -17.43 -0.09 0.63 16 17 N -0.88 -21.79 10.36 55.49 0.57 -21.22 16 18 Si 0.91 19.66 29.56 -169.99 -5.02 14.64 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 22 C 0.22 3.72 3.69 -6.83 -0.03 3.70 16 23 C 0.20 3.82 12.75 -20.76 -0.26 3.55 16 24 N -0.47 -9.63 18.12 42.15 0.76 -8.86 16 25 H 0.07 1.40 5.11 -51.93 -0.27 1.13 16 26 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.35 6.35 5.84 -39.29 -0.23 6.12 16 29 H 0.33 5.85 8.98 -39.30 -0.35 5.50 16 30 H 0.14 2.71 5.68 -52.49 -0.30 2.41 16 31 H 0.12 1.57 8.06 -52.48 -0.42 1.15 16 32 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 33 H 0.14 1.77 8.06 -52.49 -0.42 1.35 16 34 H 0.26 6.49 8.31 -40.82 -0.34 6.15 16 35 H 0.08 1.31 6.41 -51.93 -0.33 0.98 16 36 H 0.10 1.50 8.08 -51.93 -0.42 1.08 16 LS Contribution 294.98 15.07 4.45 4.45 Total: -1.00 -25.81 294.98 -5.93 -31.74 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -4.26 Total: 14.63 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -2.17 Total: 0.73 kcal Atomic # 7 Polarization: -67.26 SS G_CDS: 1.08 Total: -66.18 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -25.81 -5.93 -31.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043338947.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.864 kcal (2) G-P(sol) polarization free energy of solvation -25.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds