Wall clock time and date at job start Mon Mar 30 2020 05:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47154 * 2 1 4 4 N 1.46903 * 109.47006 * 240.00299 * 2 1 3 5 5 C 1.52994 * 109.47376 * 120.00613 * 2 1 3 6 6 H 1.09001 * 109.47479 * 59.99587 * 5 2 1 7 7 C 1.50702 * 109.47341 * 180.02562 * 5 2 1 8 8 C 1.38653 * 120.79123 * 62.30226 * 7 5 2 9 9 C 1.38203 * 119.16137 * 179.75761 * 8 7 5 10 10 N 1.31869 * 120.76085 * 0.53079 * 9 8 7 11 11 C 1.31865 * 121.72819 * 359.74552 * 10 9 8 12 12 C 1.38201 * 120.76625 * 359.97372 * 11 10 9 13 13 N 1.46502 * 109.46697 * 299.99796 * 5 2 1 14 14 C 1.36938 * 120.00147 * 303.11988 * 13 5 2 15 15 H 1.08002 * 119.99966 * 32.68805 * 14 13 5 16 16 C 1.38810 * 119.99810 * 212.41424 * 14 13 5 17 17 N 1.31620 * 120.00537 * 9.71882 * 16 14 13 18 18 Si 1.86804 * 119.99778 * 189.71880 * 16 14 13 19 19 H 1.48509 * 109.46699 * 90.00198 * 18 16 14 20 20 H 1.48501 * 109.46974 * 209.99852 * 18 16 14 21 21 H 1.48495 * 109.47146 * 330.00109 * 18 16 14 22 22 C 1.46505 * 119.99712 * 123.12466 * 13 5 2 23 23 C 1.47193 * 109.47584 * 83.22566 * 22 13 5 24 24 N 5.51442 * 98.82756 * 111.86170 * 2 1 3 25 25 H 1.08994 * 109.46843 * 299.99532 * 1 2 3 26 26 H 1.09001 * 109.46786 * 59.99509 * 1 2 3 27 27 H 1.09003 * 109.46945 * 179.97438 * 1 2 3 28 28 H 1.00902 * 110.99773 * 179.97438 * 4 2 1 29 29 H 1.00900 * 111.00043 * 303.95317 * 4 2 1 30 30 H 1.08004 * 120.41271 * 0.02562 * 8 7 5 31 31 H 1.07996 * 119.61719 * 180.25582 * 9 8 7 32 32 H 1.07998 * 119.61577 * 179.97438 * 11 10 9 33 33 H 1.07997 * 120.41928 * 180.02562 * 12 11 10 34 34 H 0.96993 * 120.00706 * 180.02562 * 17 16 14 35 35 H 1.09009 * 109.46803 * 203.22670 * 22 13 5 36 36 H 1.09000 * 109.46879 * 323.21503 * 22 13 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0401 -0.7213 1.2491 6 1 1.6768 -1.7490 1.2491 7 6 3.5471 -0.7208 1.2494 8 6 4.2565 0.4696 1.2977 9 6 5.6379 0.4306 1.3015 10 7 6.2803 -0.7198 1.2494 11 6 5.6387 -1.8706 1.1970 12 6 4.2572 -1.9104 1.1955 13 7 1.5518 -0.0308 2.4453 14 6 1.8291 1.2974 2.6303 15 1 1.9086 1.9563 1.7782 16 6 2.0022 1.7981 3.9134 17 7 2.0910 0.9734 4.9353 18 14 2.1094 3.6425 4.1896 19 1 0.7485 4.1870 4.4286 20 1 2.9668 3.9171 5.3706 21 1 2.6978 4.2894 2.9895 22 6 0.7669 -0.7612 3.4437 23 6 1.6752 -1.4768 4.3544 24 7 2.3763 -2.0291 5.0572 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.0284 -0.7055 -1.2230 29 1 1.6442 -1.6273 -1.2560 30 1 3.7358 1.4151 1.3363 31 1 6.1978 1.3532 1.3432 32 1 6.1992 -2.7928 1.1548 33 1 3.7374 -2.8561 1.1528 34 1 2.2116 1.3232 5.8319 35 1 0.1600 -0.0580 4.0142 36 1 0.1169 -1.4778 2.9415 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043353116.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:04 Heat of formation + Delta-G solvation = 83.540889 kcal Electronic energy + Delta-G solvation = -20155.078139 eV Core-core repulsion = 17253.942913 eV Total energy + Delta-G solvation = -2901.135226 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.133 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.78306 -37.47525 -35.26680 -33.87714 -32.08845 -31.10207 -30.59953 -28.48715 -27.13981 -26.16964 -22.87988 -22.73883 -21.66983 -19.80851 -17.51430 -16.22784 -16.11762 -15.95161 -15.39978 -15.21292 -14.72861 -14.09050 -14.01102 -13.53856 -13.14983 -13.07035 -12.97295 -12.30645 -11.99537 -11.81285 -11.34965 -11.24860 -11.16361 -11.08200 -11.04250 -10.91024 -10.52890 -10.33578 -10.11668 -9.94838 -9.08342 -8.92828 -8.86991 -8.49922 -8.41760 -7.10028 -6.13103 -3.67220 1.74660 1.91018 3.20979 3.28315 3.31374 4.02410 4.27271 4.39653 4.42867 4.97573 4.98494 5.05779 5.12574 5.35608 5.44971 5.56617 5.62207 5.70745 5.75237 5.89407 6.04902 6.06053 6.21549 6.34821 6.43343 6.49827 6.63220 6.68822 6.78334 6.79318 7.07923 7.34105 7.42857 7.55345 7.75089 8.06208 8.52892 8.77759 9.17314 9.40187 9.91175 10.92843 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.014636 B = 0.009791 C = 0.009051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.667317 B = 2859.220748 C = 3092.756520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.082 3.918 3 H 0.085 0.915 4 N -0.843 5.843 5 C 0.174 3.826 6 H 0.061 0.939 7 C -0.038 4.038 8 C -0.129 4.129 9 C 0.081 3.919 10 N -0.498 5.498 11 C 0.080 3.920 12 C -0.176 4.176 13 N -0.562 5.562 14 C -0.270 4.270 15 H 0.079 0.921 16 C 0.020 3.980 17 N -0.888 5.888 18 Si 0.907 3.093 19 H -0.283 1.283 20 H -0.291 1.291 21 H -0.275 1.275 22 C 0.262 3.738 23 C 0.245 3.755 24 N -0.502 5.502 25 H 0.077 0.923 26 H 0.048 0.952 27 H 0.041 0.959 28 H 0.336 0.664 29 H 0.331 0.669 30 H 0.147 0.853 31 H 0.144 0.856 32 H 0.141 0.859 33 H 0.118 0.882 34 H 0.263 0.737 35 H 0.105 0.895 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.799 -2.214 -9.258 9.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.031 4.031 3 H 0.103 0.897 4 N -0.371 5.371 5 C 0.065 3.935 6 H 0.079 0.921 7 C -0.048 4.048 8 C -0.149 4.149 9 C -0.075 4.075 10 N -0.208 5.208 11 C -0.077 4.077 12 C -0.197 4.197 13 N -0.281 5.281 14 C -0.398 4.398 15 H 0.096 0.904 16 C -0.182 4.182 17 N -0.529 5.529 18 Si 0.736 3.264 19 H -0.209 1.209 20 H -0.217 1.217 21 H -0.200 1.200 22 C 0.133 3.867 23 C -0.074 4.074 24 N -0.183 5.183 25 H 0.096 0.904 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.148 0.852 29 H 0.142 0.858 30 H 0.164 0.836 31 H 0.162 0.838 32 H 0.159 0.841 33 H 0.136 0.864 34 H 0.074 0.926 35 H 0.123 0.877 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.249 -2.373 -8.435 8.851 hybrid contribution -0.297 0.519 1.156 1.301 sum -1.547 -1.853 -7.279 7.669 Atomic orbital electron populations 1.21660 0.94277 1.00907 1.02166 1.21817 0.95725 0.98887 0.86633 0.89681 1.59143 1.13710 1.23003 1.41277 1.20466 0.87140 0.95724 0.90144 0.92062 1.20996 0.98110 0.92419 0.93296 1.22279 0.94486 1.00379 0.97743 1.22654 0.92446 0.95614 0.96776 1.67532 1.41562 0.98634 1.13084 1.22431 0.91783 0.95832 0.97604 1.21941 0.95566 0.98430 1.03775 1.43990 1.58314 1.06847 1.18997 1.19044 1.45610 0.82987 0.92199 0.90360 1.25294 0.98126 0.98273 0.96511 1.69668 1.50549 1.33283 0.99360 0.86228 0.77885 0.84479 0.77841 1.20923 1.21684 1.19990 1.18199 0.88648 0.92751 0.87120 1.30278 0.94269 0.89647 0.93205 1.80808 1.10179 1.16069 1.11247 0.90422 0.93255 0.94003 0.85190 0.85791 0.83590 0.83849 0.84119 0.86371 0.92639 0.87704 0.92415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.81 9.30 37.16 0.35 -1.47 16 2 C 0.08 1.22 2.65 -67.71 -0.18 1.04 16 3 H 0.09 1.43 6.34 -51.93 -0.33 1.10 16 4 N -0.84 -11.10 9.21 -4.66 -0.04 -11.14 16 5 C 0.17 2.91 2.24 -69.08 -0.15 2.75 16 6 H 0.06 0.98 7.67 -51.93 -0.40 0.58 16 7 C -0.04 -0.67 3.87 -104.32 -0.40 -1.07 16 8 C -0.13 -2.41 8.41 -39.44 -0.33 -2.74 16 9 C 0.08 1.49 11.18 -17.55 -0.20 1.29 16 10 N -0.50 -9.33 10.36 -13.26 -0.14 -9.47 16 11 C 0.08 1.38 11.18 -17.55 -0.20 1.18 16 12 C -0.18 -2.99 9.76 -39.44 -0.39 -3.37 16 13 N -0.56 -10.93 1.62 -170.29 -0.28 -11.20 16 14 C -0.27 -5.81 6.65 -15.06 -0.10 -5.91 16 15 H 0.08 1.66 5.85 -52.49 -0.31 1.35 16 16 C 0.02 0.47 5.07 -17.43 -0.09 0.38 16 17 N -0.89 -22.84 9.48 55.49 0.53 -22.31 16 18 Si 0.91 19.35 29.56 -169.99 -5.03 14.32 16 19 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 20 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 22 C 0.26 5.06 5.36 -6.83 -0.04 5.02 16 23 C 0.24 5.59 13.16 -20.76 -0.27 5.32 16 24 N -0.50 -12.67 18.54 42.15 0.78 -11.89 16 25 H 0.08 1.16 7.60 -51.93 -0.39 0.76 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.34 4.56 8.00 -39.29 -0.31 4.24 16 29 H 0.33 3.85 8.98 -39.29 -0.35 3.50 16 30 H 0.15 2.82 5.48 -52.48 -0.29 2.53 16 31 H 0.14 2.29 8.06 -52.49 -0.42 1.87 16 32 H 0.14 2.01 8.06 -52.49 -0.42 1.59 16 33 H 0.12 1.77 8.01 -52.49 -0.42 1.35 16 34 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 35 H 0.11 2.13 7.13 -51.92 -0.37 1.76 16 36 H 0.06 0.90 8.04 -51.93 -0.42 0.48 16 LS Contribution 302.73 15.07 4.56 4.56 Total: -1.00 -27.82 302.73 -6.03 -33.85 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -4.42 Total: 10.86 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: -2.00 Total: 2.43 kcal Atomic # 7 Polarization: -66.87 SS G_CDS: 0.85 Total: -66.02 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.03 Total: 14.32 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -27.82 -6.03 -33.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043353116.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.387 kcal (2) G-P(sol) polarization free energy of solvation -27.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds