Wall clock time and date at job start Mon Mar 30 2020 05:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47414 * 2 1 4 4 N 1.46898 * 109.47005 * 239.99876 * 2 1 3 5 5 C 1.53003 * 109.46889 * 119.99968 * 2 1 3 6 6 H 1.09006 * 109.46830 * 179.77161 * 5 2 1 7 7 C 1.50692 * 109.47293 * 59.77204 * 5 2 1 8 8 C 1.38655 * 120.79114 * 104.04181 * 7 5 2 9 9 C 1.38194 * 119.16519 * 180.02562 * 8 7 5 10 10 N 1.31876 * 120.76628 * 0.02562 * 9 8 7 11 11 C 1.31879 * 121.72179 * 359.97438 * 10 9 8 12 12 C 1.38205 * 120.76338 * 0.02562 * 11 10 9 13 13 N 1.46499 * 109.47204 * 299.76953 * 5 2 1 14 14 C 1.36939 * 119.99799 * 61.25222 * 13 5 2 15 15 H 1.07993 * 120.00050 * 348.57001 * 14 13 5 16 16 C 1.38811 * 120.00095 * 168.56602 * 14 13 5 17 17 N 1.31629 * 119.99794 * 346.34653 * 16 14 13 18 18 Si 1.86800 * 120.00186 * 166.34075 * 16 14 13 19 19 H 1.48504 * 109.46773 * 90.00288 * 18 16 14 20 20 H 1.48497 * 109.47083 * 210.00121 * 18 16 14 21 21 H 1.48498 * 109.46988 * 330.00290 * 18 16 14 22 22 C 1.46497 * 120.00360 * 241.25656 * 13 5 2 23 23 C 1.47201 * 109.47054 * 268.69456 * 22 13 5 24 24 N 5.59126 * 106.11563 * 102.96467 * 2 1 3 25 25 H 1.09001 * 109.47111 * 316.41196 * 1 2 3 26 26 H 1.09003 * 109.46934 * 76.40989 * 1 2 3 27 27 H 1.08999 * 109.47039 * 196.41006 * 1 2 3 28 28 H 1.00898 * 111.00295 * 299.99885 * 4 2 1 29 29 H 1.00899 * 111.00353 * 63.95646 * 4 2 1 30 30 H 1.08005 * 120.41596 * 0.02562 * 8 7 5 31 31 H 1.07995 * 119.62282 * 180.02562 * 9 8 7 32 32 H 1.07997 * 119.61415 * 179.97438 * 11 10 9 33 33 H 1.07996 * 120.41671 * 180.02562 * 12 11 10 34 34 H 0.97002 * 119.99551 * 179.97438 * 17 16 14 35 35 H 1.09000 * 109.46833 * 28.69224 * 22 13 5 36 36 H 1.09001 * 109.47405 * 148.69384 * 22 13 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 2.0400 -0.7213 1.2493 6 1 3.1300 -0.7248 1.2472 7 6 1.5330 -2.1404 1.2521 8 6 2.3721 -3.1945 0.9245 9 6 1.8718 -4.4826 0.9375 10 7 0.6132 -4.7143 1.2558 11 6 -0.2132 -3.7366 1.5727 12 6 0.2162 -2.4229 1.5814 13 7 1.5562 -0.0275 2.4454 14 6 0.2109 0.0800 2.6775 15 1 -0.4934 -0.1777 1.9005 16 6 -0.2476 0.5201 3.9116 17 7 0.5754 0.5772 4.9372 18 14 -2.0325 1.0315 4.1168 19 1 -2.8426 -0.1478 4.5148 20 1 -2.1303 2.0766 5.1672 21 1 -2.5434 1.5720 2.8315 22 6 2.5115 0.5515 3.3932 23 6 2.8335 -0.4399 4.4326 24 7 3.0820 -1.2051 5.2346 25 1 -0.3633 0.7444 0.7085 26 1 -0.3633 0.2415 -0.9989 27 1 -0.3633 -0.9858 0.2903 28 1 1.6962 -1.6479 -1.2227 29 1 1.7503 -0.1990 -2.0372 30 1 3.4037 -3.0111 0.6625 31 1 2.5189 -5.3092 0.6840 32 1 -1.2375 -3.9651 1.8275 33 1 -0.4652 -1.6267 1.8421 34 1 0.2551 0.8851 5.7995 35 1 3.4223 0.8328 2.8648 36 1 2.0730 1.4349 3.8573 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043353118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:08 Heat of formation + Delta-G solvation = 122.430044 kcal Electronic energy + Delta-G solvation = -20297.707804 eV Core-core repulsion = 17398.258938 eV Total energy + Delta-G solvation = -2899.448866 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.133 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.02371 -37.58046 -35.30352 -33.87380 -32.10116 -30.95125 -30.82492 -28.59714 -26.94268 -26.46606 -22.78095 -22.67019 -21.88476 -19.65704 -17.87081 -16.39236 -16.12476 -15.77318 -15.55930 -15.07567 -14.60025 -14.14600 -13.64273 -13.49498 -13.37753 -13.04697 -12.82508 -12.30677 -12.16293 -11.91978 -11.57004 -11.34390 -11.17715 -11.02804 -10.90856 -10.65154 -10.45333 -10.18980 -10.03181 -9.53300 -8.95056 -8.85457 -8.72973 -8.46057 -8.29898 -7.38731 -6.09351 -3.48753 1.74374 1.90210 3.20758 3.26808 3.30520 4.00919 4.31581 4.41171 4.48846 4.88882 4.97682 5.06594 5.25552 5.38622 5.45981 5.61675 5.71969 5.75107 5.78901 5.89889 5.98499 6.20412 6.23940 6.34189 6.48368 6.52261 6.55481 6.78315 6.81715 7.01403 7.14083 7.32143 7.44864 7.51127 7.71820 7.97641 8.52143 8.80554 9.24588 9.44927 9.87141 10.95535 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.016380 B = 0.009371 C = 0.008913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.995095 B = 2987.330399 C = 3140.838844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.088 3.912 3 H 0.083 0.917 4 N -0.846 5.846 5 C 0.214 3.786 6 H 0.076 0.924 7 C -0.038 4.038 8 C -0.168 4.168 9 C 0.076 3.924 10 N -0.499 5.499 11 C 0.075 3.925 12 C -0.155 4.155 13 N -0.575 5.575 14 C -0.279 4.279 15 H 0.114 0.886 16 C 0.005 3.995 17 N -0.901 5.901 18 Si 0.906 3.094 19 H -0.286 1.286 20 H -0.287 1.287 21 H -0.276 1.276 22 C 0.259 3.741 23 C 0.254 3.746 24 N -0.515 5.515 25 H 0.096 0.904 26 H 0.029 0.971 27 H 0.067 0.933 28 H 0.335 0.665 29 H 0.334 0.666 30 H 0.125 0.875 31 H 0.142 0.858 32 H 0.143 0.857 33 H 0.171 0.829 34 H 0.261 0.739 35 H 0.055 0.945 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.793 0.616 -10.824 10.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C -0.025 4.025 3 H 0.101 0.899 4 N -0.375 5.375 5 C 0.106 3.894 6 H 0.094 0.906 7 C -0.049 4.049 8 C -0.189 4.189 9 C -0.081 4.081 10 N -0.209 5.209 11 C -0.081 4.081 12 C -0.174 4.174 13 N -0.295 5.295 14 C -0.407 4.407 15 H 0.130 0.870 16 C -0.194 4.194 17 N -0.545 5.545 18 Si 0.735 3.265 19 H -0.213 1.213 20 H -0.212 1.212 21 H -0.201 1.201 22 C 0.130 3.870 23 C -0.064 4.064 24 N -0.197 5.197 25 H 0.115 0.885 26 H 0.048 0.952 27 H 0.086 0.914 28 H 0.147 0.853 29 H 0.145 0.855 30 H 0.143 0.857 31 H 0.160 0.840 32 H 0.161 0.839 33 H 0.188 0.812 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.536 -1.116 -9.149 9.344 hybrid contribution -1.874 1.045 -0.010 2.146 sum -0.339 -0.071 -9.158 9.165 Atomic orbital electron populations 1.23405 0.97950 1.04631 1.00705 1.21766 0.93109 0.97992 0.89662 0.89886 1.58953 1.67545 1.06558 1.04462 1.19368 0.96902 0.85898 0.87263 0.90590 1.21015 0.93420 0.97215 0.93238 1.21981 1.00722 0.93666 1.02503 1.22478 0.92181 0.95654 0.97794 1.67531 1.04445 1.36970 1.11906 1.22711 0.99011 0.89334 0.97088 1.23151 0.98120 0.98757 0.97399 1.44179 1.03049 1.61895 1.20355 1.19993 0.82720 1.40056 0.97889 0.86958 1.24954 0.98278 1.01030 0.95121 1.69788 1.34331 1.49723 1.00702 0.86224 0.83912 0.78454 0.77904 1.21268 1.21242 1.20101 1.18629 0.91131 0.92390 0.84826 1.30400 0.88728 0.93665 0.93623 1.80815 1.14308 1.12220 1.12340 0.88504 0.95167 0.91437 0.85284 0.85466 0.85664 0.84027 0.83919 0.81248 0.92737 0.92672 0.85739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.15 7.62 37.16 0.28 -2.87 16 2 C 0.09 1.30 3.43 -67.71 -0.23 1.06 16 3 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 4 N -0.85 -10.82 9.19 -4.67 -0.04 -10.86 16 5 C 0.21 3.66 2.77 -69.08 -0.19 3.47 16 6 H 0.08 1.28 7.66 -51.93 -0.40 0.88 16 7 C -0.04 -0.68 3.87 -104.32 -0.40 -1.08 16 8 C -0.17 -2.75 9.37 -39.44 -0.37 -3.12 16 9 C 0.08 1.25 11.18 -17.55 -0.20 1.05 16 10 N -0.50 -9.09 10.36 -13.25 -0.14 -9.23 16 11 C 0.07 1.35 11.18 -17.54 -0.20 1.15 16 12 C -0.16 -2.87 6.79 -39.44 -0.27 -3.14 16 13 N -0.58 -11.42 2.42 -170.30 -0.41 -11.83 16 14 C -0.28 -5.97 5.84 -15.06 -0.09 -6.06 16 15 H 0.11 2.26 2.54 -52.49 -0.13 2.12 16 16 C 0.00 0.12 5.15 -17.43 -0.09 0.03 16 17 N -0.90 -22.73 8.56 55.49 0.47 -22.26 16 18 Si 0.91 19.10 29.58 -169.99 -5.03 14.08 16 19 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 22 C 0.26 5.20 5.45 -6.83 -0.04 5.16 16 23 C 0.25 5.98 13.44 -20.76 -0.28 5.70 16 24 N -0.52 -13.32 18.54 42.15 0.78 -12.54 16 25 H 0.10 1.64 5.65 -51.93 -0.29 1.34 16 26 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 1.08 3.90 -51.93 -0.20 0.87 16 28 H 0.33 4.43 7.64 -39.29 -0.30 4.13 16 29 H 0.33 3.66 9.07 -39.29 -0.36 3.30 16 30 H 0.13 1.81 8.05 -52.48 -0.42 1.39 16 31 H 0.14 1.91 8.06 -52.49 -0.42 1.49 16 32 H 0.14 2.26 8.06 -52.49 -0.42 1.84 16 33 H 0.17 3.29 3.46 -52.49 -0.18 3.11 16 34 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 35 H 0.06 0.91 7.90 -51.93 -0.41 0.50 16 36 H 0.13 2.67 6.22 -51.93 -0.32 2.34 16 LS Contribution 288.86 15.07 4.35 4.35 Total: -1.00 -27.44 288.86 -5.93 -33.36 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -3.85 Total: 13.57 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -2.07 Total: 1.35 kcal Atomic # 7 Polarization: -67.38 SS G_CDS: 0.66 Total: -66.71 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -27.44 -5.93 -33.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043353118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.793 kcal (2) G-P(sol) polarization free energy of solvation -27.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds