Wall clock time and date at job start Mon Mar 30 2020 05:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47414 * 2 1 4 4 N 1.46898 * 109.47005 * 239.99876 * 2 1 3 5 5 C 1.53003 * 109.46889 * 119.99968 * 2 1 3 6 6 H 1.09006 * 109.46830 * 179.77161 * 5 2 1 7 7 C 1.50692 * 109.47293 * 59.77204 * 5 2 1 8 8 C 1.38655 * 120.79114 * 104.04181 * 7 5 2 9 9 C 1.38194 * 119.16519 * 180.02562 * 8 7 5 10 10 N 1.31876 * 120.76628 * 0.02562 * 9 8 7 11 11 C 1.31879 * 121.72179 * 359.97438 * 10 9 8 12 12 C 1.38205 * 120.76338 * 0.02562 * 11 10 9 13 13 N 1.46499 * 109.47204 * 299.76953 * 5 2 1 14 14 C 1.36939 * 119.99799 * 61.25222 * 13 5 2 15 15 H 1.07993 * 120.00050 * 348.57001 * 14 13 5 16 16 C 1.38811 * 120.00095 * 168.56602 * 14 13 5 17 17 N 1.31629 * 119.99794 * 346.34653 * 16 14 13 18 18 Si 1.86800 * 120.00186 * 166.34075 * 16 14 13 19 19 H 1.48504 * 109.46773 * 90.00288 * 18 16 14 20 20 H 1.48497 * 109.47083 * 210.00121 * 18 16 14 21 21 H 1.48498 * 109.46988 * 330.00290 * 18 16 14 22 22 C 1.46497 * 120.00360 * 241.25656 * 13 5 2 23 23 C 1.47201 * 109.47054 * 268.69456 * 22 13 5 24 24 N 5.59126 * 106.11563 * 102.96467 * 2 1 3 25 25 H 1.09001 * 109.47111 * 316.41196 * 1 2 3 26 26 H 1.09003 * 109.46934 * 76.40989 * 1 2 3 27 27 H 1.08999 * 109.47039 * 196.41006 * 1 2 3 28 28 H 1.00898 * 111.00295 * 299.99885 * 4 2 1 29 29 H 1.00899 * 111.00353 * 63.95646 * 4 2 1 30 30 H 1.08005 * 120.41596 * 0.02562 * 8 7 5 31 31 H 1.07995 * 119.62282 * 180.02562 * 9 8 7 32 32 H 1.07997 * 119.61415 * 179.97438 * 11 10 9 33 33 H 1.07996 * 120.41671 * 180.02562 * 12 11 10 34 34 H 0.97002 * 119.99551 * 179.97438 * 17 16 14 35 35 H 1.09000 * 109.46833 * 28.69224 * 22 13 5 36 36 H 1.09001 * 109.47405 * 148.69384 * 22 13 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 2.0400 -0.7213 1.2493 6 1 3.1300 -0.7248 1.2472 7 6 1.5330 -2.1404 1.2521 8 6 2.3721 -3.1945 0.9245 9 6 1.8718 -4.4826 0.9375 10 7 0.6132 -4.7143 1.2558 11 6 -0.2132 -3.7366 1.5727 12 6 0.2162 -2.4229 1.5814 13 7 1.5562 -0.0275 2.4454 14 6 0.2109 0.0800 2.6775 15 1 -0.4934 -0.1777 1.9005 16 6 -0.2476 0.5201 3.9116 17 7 0.5754 0.5772 4.9372 18 14 -2.0325 1.0315 4.1168 19 1 -2.8426 -0.1478 4.5148 20 1 -2.1303 2.0766 5.1672 21 1 -2.5434 1.5720 2.8315 22 6 2.5115 0.5515 3.3932 23 6 2.8335 -0.4399 4.4326 24 7 3.0820 -1.2051 5.2346 25 1 -0.3633 0.7444 0.7085 26 1 -0.3633 0.2415 -0.9989 27 1 -0.3633 -0.9858 0.2903 28 1 1.6962 -1.6479 -1.2227 29 1 1.7503 -0.1990 -2.0372 30 1 3.4037 -3.0111 0.6625 31 1 2.5189 -5.3092 0.6840 32 1 -1.2375 -3.9651 1.8275 33 1 -0.4652 -1.6267 1.8421 34 1 0.2551 0.8851 5.7995 35 1 3.4223 0.8328 2.8648 36 1 2.0730 1.4349 3.8573 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043353118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:07 Heat of formation + Delta-G solvation = 104.390189 kcal Electronic energy + Delta-G solvation = -20298.490071 eV Core-core repulsion = 17398.258938 eV Total energy + Delta-G solvation = -2900.231133 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.133 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.38616 -39.00576 -36.95177 -35.51553 -33.50176 -32.53039 -32.17226 -29.91540 -28.38620 -27.98490 -24.24759 -24.11090 -23.24131 -20.97635 -19.51306 -17.86939 -17.70112 -17.07513 -16.88520 -16.46102 -16.14461 -15.55131 -15.20482 -14.86415 -14.66531 -14.45011 -14.24111 -13.88061 -13.65999 -13.37218 -13.07834 -12.99393 -12.76254 -12.69146 -12.59138 -12.14149 -11.86704 -11.72347 -11.61161 -11.03161 -10.61442 -10.24908 -10.13705 -9.82415 -9.40797 -9.04740 -7.85977 -5.22999 0.40215 0.53415 1.50169 1.55656 1.60482 2.31520 2.56522 2.67846 3.04145 3.34102 3.52759 3.71664 3.90397 4.09903 4.10978 4.18244 4.30399 4.46067 4.49338 4.55072 4.75481 4.89424 4.92354 4.97366 5.15175 5.17201 5.23009 5.42501 5.54376 5.57875 5.63720 5.79844 6.00742 6.24507 6.42100 6.75270 7.08262 7.17763 7.43664 7.79294 8.17291 9.17548 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.016380 B = 0.009371 C = 0.008913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.995095 B = 2987.330399 C = 3140.838844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.099 3.901 3 H 0.087 0.913 4 N -0.839 5.839 5 C 0.212 3.788 6 H 0.085 0.915 7 C -0.046 4.046 8 C -0.167 4.167 9 C 0.074 3.926 10 N -0.515 5.515 11 C 0.063 3.937 12 C -0.169 4.169 13 N -0.581 5.581 14 C -0.251 4.251 15 H 0.128 0.872 16 C -0.048 4.048 17 N -0.933 5.933 18 Si 0.950 3.050 19 H -0.302 1.302 20 H -0.303 1.303 21 H -0.258 1.258 22 C 0.257 3.743 23 C 0.268 3.732 24 N -0.565 5.565 25 H 0.077 0.923 26 H 0.049 0.951 27 H 0.058 0.942 28 H 0.335 0.665 29 H 0.348 0.652 30 H 0.149 0.851 31 H 0.173 0.827 32 H 0.156 0.844 33 H 0.158 0.842 34 H 0.245 0.755 35 H 0.100 0.900 36 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.500 0.422 -13.363 13.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.014 4.014 3 H 0.105 0.895 4 N -0.369 5.369 5 C 0.104 3.896 6 H 0.103 0.897 7 C -0.056 4.056 8 C -0.187 4.187 9 C -0.083 4.083 10 N -0.225 5.225 11 C -0.093 4.093 12 C -0.188 4.188 13 N -0.301 5.301 14 C -0.379 4.379 15 H 0.145 0.855 16 C -0.242 4.242 17 N -0.581 5.581 18 Si 0.780 3.220 19 H -0.230 1.230 20 H -0.230 1.230 21 H -0.182 1.182 22 C 0.128 3.872 23 C -0.049 4.049 24 N -0.248 5.248 25 H 0.096 0.904 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.147 0.853 29 H 0.161 0.839 30 H 0.166 0.834 31 H 0.190 0.810 32 H 0.173 0.827 33 H 0.174 0.826 34 H 0.056 0.944 35 H 0.118 0.882 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.231 -1.309 -11.761 12.042 hybrid contribution -2.055 1.024 0.621 2.379 sum 0.175 -0.284 -11.141 11.146 Atomic orbital electron populations 1.23287 0.98282 1.03392 1.01329 1.21535 0.92639 0.97887 0.89344 0.89524 1.58883 1.67196 1.06503 1.04300 1.19575 0.97443 0.85636 0.86910 0.89677 1.21120 0.93338 0.97816 0.93336 1.22232 1.01565 0.93208 1.01707 1.23036 0.91921 0.96828 0.96513 1.67590 1.05346 1.37100 1.12497 1.22945 0.99863 0.89270 0.97175 1.23049 0.98491 0.98664 0.98632 1.44350 1.02587 1.62330 1.20785 1.20397 0.83888 1.36313 0.97337 0.85527 1.25420 1.00202 1.03009 0.95553 1.69934 1.35080 1.52640 1.00469 0.85519 0.81618 0.77005 0.77858 1.22990 1.23023 1.18220 1.18876 0.92847 0.90939 0.84542 1.31200 0.87261 0.93160 0.93271 1.80805 1.16191 1.14011 1.13830 0.90427 0.93157 0.92311 0.85301 0.83894 0.83352 0.81003 0.82707 0.82558 0.94447 0.88249 0.87024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.65 7.62 71.98 0.55 -5.10 16 2 C 0.10 2.61 3.43 44.92 0.15 2.77 16 3 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 4 N -0.84 -18.34 9.19 -168.67 -1.55 -19.89 16 5 C 0.21 6.66 2.77 44.24 0.12 6.78 16 6 H 0.09 2.56 7.66 -2.38 -0.02 2.54 16 7 C -0.05 -1.52 3.87 -19.67 -0.08 -1.59 16 8 C -0.17 -4.95 9.37 22.36 0.21 -4.74 16 9 C 0.07 2.22 11.18 84.68 0.95 3.17 16 10 N -0.52 -17.81 10.36 -195.85 -2.03 -19.84 16 11 C 0.06 2.20 11.18 84.68 0.95 3.15 16 12 C -0.17 -6.04 6.79 22.36 0.15 -5.89 16 13 N -0.58 -22.10 2.42 -692.70 -1.68 -23.78 16 14 C -0.25 -10.51 5.84 84.03 0.49 -10.02 16 15 H 0.13 4.93 2.54 -2.91 -0.01 4.93 16 16 C -0.05 -2.23 5.15 84.86 0.44 -1.80 16 17 N -0.93 -48.06 8.56 21.65 0.19 -47.87 16 18 Si 0.95 39.80 29.58 68.60 2.03 41.82 16 19 H -0.30 -13.28 7.11 99.48 0.71 -12.58 16 20 H -0.30 -13.42 7.11 99.48 0.71 -12.71 16 21 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 22 C 0.26 9.97 5.45 84.57 0.46 10.43 16 23 C 0.27 12.53 13.44 89.44 1.20 13.73 16 24 N -0.57 -29.41 18.54 20.01 0.37 -29.04 16 25 H 0.08 2.45 5.65 -2.39 -0.01 2.44 16 26 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.06 1.75 3.90 -2.39 -0.01 1.74 16 28 H 0.33 7.65 7.64 -89.70 -0.69 6.97 16 29 H 0.35 6.26 9.07 -89.69 -0.81 5.45 16 30 H 0.15 3.69 8.05 -2.91 -0.02 3.66 16 31 H 0.17 4.01 8.06 -2.91 -0.02 3.98 16 32 H 0.16 4.79 8.06 -2.91 -0.02 4.77 16 33 H 0.16 5.94 3.46 -2.91 -0.01 5.93 16 34 H 0.25 13.08 8.31 -92.71 -0.77 12.31 16 35 H 0.10 2.97 7.90 -2.39 -0.02 2.95 16 36 H 0.11 4.74 6.22 -2.39 -0.01 4.73 16 Total: -1.00 -58.93 288.86 2.57 -56.36 By element: Atomic # 1 Polarization: 31.71 SS G_CDS: -0.35 Total: 31.36 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: 5.59 Total: 10.88 kcal Atomic # 7 Polarization: -135.72 SS G_CDS: -4.70 Total: -140.42 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.82 kcal Total: -58.93 2.57 -56.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043353118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.747 kcal (2) G-P(sol) polarization free energy of solvation -58.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds