Wall clock time and date at job start Mon Mar 30 2020 05:08:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.08994 * 109.46900 * 2 1
4 4 N 1.46897 * 109.47141 * 120.00315 * 2 1 3
5 5 C 1.53003 * 109.47079 * 240.00213 * 2 1 3
6 6 H 1.08999 * 109.47410 * 300.00037 * 5 2 1
7 7 C 1.50697 * 109.47112 * 180.02562 * 5 2 1
8 8 C 1.38646 * 120.78748 * 290.82720 * 7 5 2
9 9 C 1.38216 * 119.16248 * 179.75700 * 8 7 5
10 10 N 1.31870 * 120.75771 * 0.53315 * 9 8 7
11 11 C 1.31869 * 121.73065 * 359.74013 * 10 9 8
12 12 C 1.38205 * 120.76119 * 359.97438 * 11 10 9
13 13 N 1.46497 * 109.46861 * 59.99738 * 5 2 1
14 14 C 1.36939 * 119.99948 * 53.43394 * 13 5 2
15 15 H 1.07991 * 120.00314 * 324.43478 * 14 13 5
16 16 C 1.38817 * 119.99962 * 144.43417 * 14 13 5
17 17 N 1.31618 * 120.00122 * 159.91889 * 16 14 13
18 18 Si 1.86803 * 119.99908 * 339.91180 * 16 14 13
19 19 H 1.48497 * 109.47041 * 94.71511 * 18 16 14
20 20 H 1.48504 * 109.47019 * 214.71404 * 18 16 14
21 21 H 1.48498 * 109.47213 * 334.71335 * 18 16 14
22 22 C 1.46504 * 120.00175 * 233.42718 * 13 5 2
23 23 C 1.47200 * 109.46702 * 85.04061 * 22 13 5
24 24 N 4.39782 * 42.87489 * 251.88901 * 2 1 3
25 25 H 1.09006 * 109.47579 * 179.97438 * 1 2 3
26 26 H 1.09002 * 109.47238 * 299.99677 * 1 2 3
27 27 H 1.09000 * 109.47492 * 59.99814 * 1 2 3
28 28 H 1.00897 * 111.00341 * 296.04552 * 4 2 1
29 29 H 1.00903 * 111.00115 * 59.99994 * 4 2 1
30 30 H 1.08001 * 120.42299 * 0.02562 * 8 7 5
31 31 H 1.07996 * 119.61894 * 180.30203 * 9 8 7
32 32 H 1.07994 * 119.61828 * 179.97438 * 11 10 9
33 33 H 1.08004 * 120.41481 * 180.02562 * 12 11 10
34 34 H 0.97000 * 120.00349 * 180.02562 * 17 16 14
35 35 H 1.08998 * 109.46951 * 325.04301 * 22 13 5
36 36 H 1.09001 * 109.47241 * 205.03968 * 22 13 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8932 1.0276 0.0000
4 7 2.0196 -0.6925 1.1994
5 6 2.0399 -0.7212 -1.2493
6 1 1.6766 -1.7489 -1.2494
7 6 3.5469 -0.7218 -1.2490
8 6 4.2570 0.4538 -1.4385
9 6 5.6386 0.4155 -1.4269
10 7 6.2802 -0.7228 -1.2490
11 6 5.6377 -1.8606 -1.0713
12 6 4.2562 -1.8988 -1.0649
13 7 1.5515 -0.0306 -2.4454
14 6 1.7679 1.3132 -2.5964
15 1 1.7450 1.9640 -1.7350
16 6 2.0168 1.8387 -3.8569
17 7 1.8355 3.1227 -4.0821
18 14 2.6091 0.7235 -5.2335
19 1 1.4460 0.2669 -6.0358
20 1 3.5496 1.4713 -6.1063
21 1 3.3028 -0.4541 -4.6528
22 6 0.8317 -0.7775 -3.4800
23 6 -0.5932 -0.8636 -3.1210
24 7 -1.6930 -0.9302 -2.8440
25 1 -0.3634 -1.0277 -0.0005
26 1 -0.3634 0.5138 0.8900
27 1 -0.3634 0.5138 -0.8899
28 1 1.7502 -0.1991 2.0372
29 1 1.6961 -1.6480 1.2227
30 1 3.7373 1.3885 -1.5889
31 1 6.1991 1.3276 -1.5689
32 1 6.1975 -2.7731 -0.9291
33 1 3.7357 -2.8337 -0.9185
34 1 2.0090 3.4899 -4.9630
35 1 1.2479 -1.7818 -3.5589
36 1 0.9352 -0.2650 -4.4364
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000043353119.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:08:10
Heat of formation + Delta-G solvation = 94.884934 kcal
Electronic energy + Delta-G solvation = -20090.658884 eV
Core-core repulsion = 17190.015573 eV
Total energy + Delta-G solvation = -2900.643311 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 260.133 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-39.71823 -37.71496 -35.77295 -34.40975 -32.24922 -31.55257 -30.51375 -28.63389
-27.29383 -26.39230 -22.87215 -22.71851 -21.76984 -19.72818 -18.13670 -16.75801
-16.32762 -15.71476 -15.59339 -15.08332 -14.87032 -14.09426 -14.06085 -13.44690
-13.34860 -13.06868 -12.92513 -12.84771 -12.75026 -12.32159 -11.92297 -11.80123
-11.52832 -11.26131 -11.13986 -11.02156 -10.74149 -10.31384 -10.13943 -9.80367
-8.95792 -8.84280 -8.75926 -8.44694 -8.36570 -7.40465 -6.28150 -3.75951
1.83304 2.00360 3.05402 3.25996 3.30141 3.34160 3.46939 4.22685
4.44259 4.56398 4.71881 5.01879 5.04271 5.10150 5.33210 5.43967
5.51877 5.61718 5.74968 5.77147 5.89265 5.92954 5.99484 6.02559
6.22681 6.31898 6.54457 6.63935 6.67047 6.74281 7.15246 7.41008
7.47096 7.65185 7.70099 8.04109 8.22325 8.55338 8.59629 9.33424
9.64575 10.84502
Molecular weight = 260.13amu
Principal moments of inertia in cm(-1)
A = 0.015065 B = 0.011242 C = 0.008099
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1858.135308 B = 2489.981106 C = 3456.373076
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.174 4.174
2 C 0.083 3.917
3 H 0.092 0.908
4 N -0.840 5.840
5 C 0.218 3.782
6 H 0.065 0.935
7 C -0.016 4.016
8 C -0.133 4.133
9 C 0.078 3.922
10 N -0.501 5.501
11 C 0.076 3.924
12 C -0.168 4.168
13 N -0.579 5.579
14 C -0.281 4.281
15 H 0.093 0.907
16 C 0.047 3.953
17 N -0.882 5.882
18 Si 0.863 3.137
19 H -0.281 1.281
20 H -0.294 1.294
21 H -0.259 1.259
22 C 0.214 3.786
23 C 0.205 3.795
24 N -0.469 5.469
25 H 0.040 0.960
26 H 0.041 0.959
27 H 0.077 0.923
28 H 0.336 0.664
29 H 0.331 0.669
30 H 0.159 0.841
31 H 0.144 0.856
32 H 0.140 0.860
33 H 0.119 0.881
34 H 0.269 0.731
35 H 0.088 0.912
36 H 0.098 0.902
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.998 -8.383 5.264 10.343
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.234 4.234
2 C -0.029 4.029
3 H 0.110 0.890
4 N -0.368 5.368
5 C 0.111 3.889
6 H 0.083 0.917
7 C -0.026 4.026
8 C -0.152 4.152
9 C -0.078 4.078
10 N -0.211 5.211
11 C -0.081 4.081
12 C -0.188 4.188
13 N -0.299 5.299
14 C -0.409 4.409
15 H 0.110 0.890
16 C -0.157 4.157
17 N -0.520 5.520
18 Si 0.692 3.308
19 H -0.209 1.209
20 H -0.221 1.221
21 H -0.183 1.183
22 C 0.084 3.916
23 C -0.115 4.115
24 N -0.149 5.149
25 H 0.059 0.941
26 H 0.061 0.939
27 H 0.096 0.904
28 H 0.148 0.852
29 H 0.142 0.858
30 H 0.176 0.824
31 H 0.162 0.838
32 H 0.158 0.842
33 H 0.137 0.863
34 H 0.079 0.921
35 H 0.106 0.894
36 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges 3.049 -8.146 5.253 10.161
hybrid contribution -1.286 -0.504 -0.840 1.616
sum 1.764 -8.649 4.413 9.869
Atomic orbital electron populations
1.22485 0.97529 1.00777 1.02593 1.21762 0.92163 0.99496 0.89502
0.89021 1.58873 1.67504 1.05995 1.04460 1.19357 0.87877 0.94725
0.86910 0.91722 1.20590 0.96833 0.92584 0.92582 1.22585 0.94546
1.01313 0.96790 1.22676 0.92521 0.95560 0.97062 1.67516 1.41698
0.99011 1.12846 1.22396 0.91748 0.95829 0.98101 1.21827 0.95369
0.98445 1.03191 1.44065 1.59260 1.06952 1.19659 1.18675 1.46288
0.80535 0.95374 0.89010 1.25411 0.97234 0.95239 0.97785 1.69805
1.46818 1.12372 1.23000 0.87162 0.79040 0.81940 0.82673 1.20889
1.22113 1.18296 1.19200 0.79491 0.98181 0.94732 1.31276 0.96212
0.91458 0.92560 1.81002 1.13606 1.10415 1.09852 0.94130 0.93944
0.90378 0.85170 0.85764 0.82378 0.83826 0.84236 0.86296 0.92063
0.89412 0.88452
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.80 9.02 37.15 0.33 -2.46 16
2 C 0.08 1.31 2.55 -67.72 -0.17 1.13 16
3 H 0.09 1.66 6.64 -51.93 -0.34 1.31 16
4 N -0.84 -10.93 8.81 -4.67 -0.04 -10.97 16
5 C 0.22 3.60 2.21 -69.08 -0.15 3.45 16
6 H 0.06 0.97 7.74 -51.93 -0.40 0.57 16
7 C -0.02 -0.27 4.57 -104.32 -0.48 -0.75 16
8 C -0.13 -2.45 8.78 -39.44 -0.35 -2.80 16
9 C 0.08 1.38 11.18 -17.54 -0.20 1.18 16
10 N -0.50 -8.87 10.36 -13.25 -0.14 -9.01 16
11 C 0.08 1.19 11.18 -17.55 -0.20 1.00 16
12 C -0.17 -2.57 9.76 -39.44 -0.39 -2.96 16
13 N -0.58 -11.07 1.28 -170.30 -0.22 -11.28 16
14 C -0.28 -6.34 6.37 -15.06 -0.10 -6.44 16
15 H 0.09 2.26 6.48 -52.49 -0.34 1.92 16
16 C 0.05 1.14 5.33 -17.43 -0.09 1.05 16
17 N -0.88 -23.59 13.97 55.49 0.78 -22.81 16
18 Si 0.86 18.97 24.81 -169.99 -4.22 14.75 16
19 H -0.28 -5.95 6.66 56.52 0.38 -5.58 16
20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16
21 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16
22 C 0.21 3.85 4.70 -6.83 -0.03 3.82 16
23 C 0.20 3.87 14.36 -20.76 -0.30 3.57 16
24 N -0.47 -9.48 18.54 42.15 0.78 -8.70 16
25 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16
26 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16
27 H 0.08 1.51 6.34 -51.93 -0.33 1.18 16
28 H 0.34 3.91 9.07 -39.29 -0.36 3.55 16
29 H 0.33 3.83 9.00 -39.29 -0.35 3.47 16
30 H 0.16 3.20 5.54 -52.49 -0.29 2.91 16
31 H 0.14 2.26 8.06 -52.49 -0.42 1.84 16
32 H 0.14 1.75 8.06 -52.49 -0.42 1.33 16
33 H 0.12 1.50 8.02 -52.48 -0.42 1.08 16
34 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16
35 H 0.09 1.30 8.08 -51.93 -0.42 0.88 16
36 H 0.10 1.92 3.06 -51.93 -0.16 1.76 16
LS Contribution 299.33 15.07 4.51 4.51
Total: -1.00 -27.11 299.33 -4.92 -32.04
By element:
Atomic # 1 Polarization: 15.94 SS G_CDS: -4.27 Total: 11.67 kcal
Atomic # 6 Polarization: 1.92 SS G_CDS: -2.11 Total: -0.19 kcal
Atomic # 7 Polarization: -63.94 SS G_CDS: 1.16 Total: -62.78 kcal
Atomic # 14 Polarization: 18.97 SS G_CDS: -4.22 Total: 14.75 kcal
Total LS contribution 4.51 Total: 4.51 kcal
Total: -27.11 -4.92 -32.04 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000043353119.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 126.922 kcal
(2) G-P(sol) polarization free energy of solvation -27.115 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.808 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.923 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.037 kcal
(6) G-S(sol) free energy of system = (1) + (5) 94.885 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds