Wall clock time and date at job start Mon Mar 30 2020 05:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.46900 * 2 1 4 4 N 1.46897 * 109.47141 * 120.00315 * 2 1 3 5 5 C 1.53003 * 109.47079 * 240.00213 * 2 1 3 6 6 H 1.08999 * 109.47410 * 300.00037 * 5 2 1 7 7 C 1.50697 * 109.47112 * 180.02562 * 5 2 1 8 8 C 1.38646 * 120.78748 * 290.82720 * 7 5 2 9 9 C 1.38216 * 119.16248 * 179.75700 * 8 7 5 10 10 N 1.31870 * 120.75771 * 0.53315 * 9 8 7 11 11 C 1.31869 * 121.73065 * 359.74013 * 10 9 8 12 12 C 1.38205 * 120.76119 * 359.97438 * 11 10 9 13 13 N 1.46497 * 109.46861 * 59.99738 * 5 2 1 14 14 C 1.36939 * 119.99948 * 53.43394 * 13 5 2 15 15 H 1.07991 * 120.00314 * 324.43478 * 14 13 5 16 16 C 1.38817 * 119.99962 * 144.43417 * 14 13 5 17 17 N 1.31618 * 120.00122 * 159.91889 * 16 14 13 18 18 Si 1.86803 * 119.99908 * 339.91180 * 16 14 13 19 19 H 1.48497 * 109.47041 * 94.71511 * 18 16 14 20 20 H 1.48504 * 109.47019 * 214.71404 * 18 16 14 21 21 H 1.48498 * 109.47213 * 334.71335 * 18 16 14 22 22 C 1.46504 * 120.00175 * 233.42718 * 13 5 2 23 23 C 1.47200 * 109.46702 * 85.04061 * 22 13 5 24 24 N 4.39782 * 42.87489 * 251.88901 * 2 1 3 25 25 H 1.09006 * 109.47579 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47238 * 299.99677 * 1 2 3 27 27 H 1.09000 * 109.47492 * 59.99814 * 1 2 3 28 28 H 1.00897 * 111.00341 * 296.04552 * 4 2 1 29 29 H 1.00903 * 111.00115 * 59.99994 * 4 2 1 30 30 H 1.08001 * 120.42299 * 0.02562 * 8 7 5 31 31 H 1.07996 * 119.61894 * 180.30203 * 9 8 7 32 32 H 1.07994 * 119.61828 * 179.97438 * 11 10 9 33 33 H 1.08004 * 120.41481 * 180.02562 * 12 11 10 34 34 H 0.97000 * 120.00349 * 180.02562 * 17 16 14 35 35 H 1.08998 * 109.46951 * 325.04301 * 22 13 5 36 36 H 1.09001 * 109.47241 * 205.03968 * 22 13 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0399 -0.7212 -1.2493 6 1 1.6766 -1.7489 -1.2494 7 6 3.5469 -0.7218 -1.2490 8 6 4.2570 0.4538 -1.4385 9 6 5.6386 0.4155 -1.4269 10 7 6.2802 -0.7228 -1.2490 11 6 5.6377 -1.8606 -1.0713 12 6 4.2562 -1.8988 -1.0649 13 7 1.5515 -0.0306 -2.4454 14 6 1.7679 1.3132 -2.5964 15 1 1.7450 1.9640 -1.7350 16 6 2.0168 1.8387 -3.8569 17 7 1.8355 3.1227 -4.0821 18 14 2.6091 0.7235 -5.2335 19 1 1.4460 0.2669 -6.0358 20 1 3.5496 1.4713 -6.1063 21 1 3.3028 -0.4541 -4.6528 22 6 0.8317 -0.7775 -3.4800 23 6 -0.5932 -0.8636 -3.1210 24 7 -1.6930 -0.9302 -2.8440 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.7502 -0.1991 2.0372 29 1 1.6961 -1.6480 1.2227 30 1 3.7373 1.3885 -1.5889 31 1 6.1991 1.3276 -1.5689 32 1 6.1975 -2.7731 -0.9291 33 1 3.7357 -2.8337 -0.9185 34 1 2.0090 3.4899 -4.9630 35 1 1.2479 -1.7818 -3.5589 36 1 0.9352 -0.2650 -4.4364 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043353119.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:10 Heat of formation + Delta-G solvation = 94.884934 kcal Electronic energy + Delta-G solvation = -20090.658884 eV Core-core repulsion = 17190.015573 eV Total energy + Delta-G solvation = -2900.643311 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.133 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.71823 -37.71496 -35.77295 -34.40975 -32.24922 -31.55257 -30.51375 -28.63389 -27.29383 -26.39230 -22.87215 -22.71851 -21.76984 -19.72818 -18.13670 -16.75801 -16.32762 -15.71476 -15.59339 -15.08332 -14.87032 -14.09426 -14.06085 -13.44690 -13.34860 -13.06868 -12.92513 -12.84771 -12.75026 -12.32159 -11.92297 -11.80123 -11.52832 -11.26131 -11.13986 -11.02156 -10.74149 -10.31384 -10.13943 -9.80367 -8.95792 -8.84280 -8.75926 -8.44694 -8.36570 -7.40465 -6.28150 -3.75951 1.83304 2.00360 3.05402 3.25996 3.30141 3.34160 3.46939 4.22685 4.44259 4.56398 4.71881 5.01879 5.04271 5.10150 5.33210 5.43967 5.51877 5.61718 5.74968 5.77147 5.89265 5.92954 5.99484 6.02559 6.22681 6.31898 6.54457 6.63935 6.67047 6.74281 7.15246 7.41008 7.47096 7.65185 7.70099 8.04109 8.22325 8.55338 8.59629 9.33424 9.64575 10.84502 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.015065 B = 0.011242 C = 0.008099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.135308 B = 2489.981106 C = 3456.373076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.083 3.917 3 H 0.092 0.908 4 N -0.840 5.840 5 C 0.218 3.782 6 H 0.065 0.935 7 C -0.016 4.016 8 C -0.133 4.133 9 C 0.078 3.922 10 N -0.501 5.501 11 C 0.076 3.924 12 C -0.168 4.168 13 N -0.579 5.579 14 C -0.281 4.281 15 H 0.093 0.907 16 C 0.047 3.953 17 N -0.882 5.882 18 Si 0.863 3.137 19 H -0.281 1.281 20 H -0.294 1.294 21 H -0.259 1.259 22 C 0.214 3.786 23 C 0.205 3.795 24 N -0.469 5.469 25 H 0.040 0.960 26 H 0.041 0.959 27 H 0.077 0.923 28 H 0.336 0.664 29 H 0.331 0.669 30 H 0.159 0.841 31 H 0.144 0.856 32 H 0.140 0.860 33 H 0.119 0.881 34 H 0.269 0.731 35 H 0.088 0.912 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.998 -8.383 5.264 10.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.029 4.029 3 H 0.110 0.890 4 N -0.368 5.368 5 C 0.111 3.889 6 H 0.083 0.917 7 C -0.026 4.026 8 C -0.152 4.152 9 C -0.078 4.078 10 N -0.211 5.211 11 C -0.081 4.081 12 C -0.188 4.188 13 N -0.299 5.299 14 C -0.409 4.409 15 H 0.110 0.890 16 C -0.157 4.157 17 N -0.520 5.520 18 Si 0.692 3.308 19 H -0.209 1.209 20 H -0.221 1.221 21 H -0.183 1.183 22 C 0.084 3.916 23 C -0.115 4.115 24 N -0.149 5.149 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.096 0.904 28 H 0.148 0.852 29 H 0.142 0.858 30 H 0.176 0.824 31 H 0.162 0.838 32 H 0.158 0.842 33 H 0.137 0.863 34 H 0.079 0.921 35 H 0.106 0.894 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.049 -8.146 5.253 10.161 hybrid contribution -1.286 -0.504 -0.840 1.616 sum 1.764 -8.649 4.413 9.869 Atomic orbital electron populations 1.22485 0.97529 1.00777 1.02593 1.21762 0.92163 0.99496 0.89502 0.89021 1.58873 1.67504 1.05995 1.04460 1.19357 0.87877 0.94725 0.86910 0.91722 1.20590 0.96833 0.92584 0.92582 1.22585 0.94546 1.01313 0.96790 1.22676 0.92521 0.95560 0.97062 1.67516 1.41698 0.99011 1.12846 1.22396 0.91748 0.95829 0.98101 1.21827 0.95369 0.98445 1.03191 1.44065 1.59260 1.06952 1.19659 1.18675 1.46288 0.80535 0.95374 0.89010 1.25411 0.97234 0.95239 0.97785 1.69805 1.46818 1.12372 1.23000 0.87162 0.79040 0.81940 0.82673 1.20889 1.22113 1.18296 1.19200 0.79491 0.98181 0.94732 1.31276 0.96212 0.91458 0.92560 1.81002 1.13606 1.10415 1.09852 0.94130 0.93944 0.90378 0.85170 0.85764 0.82378 0.83826 0.84236 0.86296 0.92063 0.89412 0.88452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 9.02 37.15 0.33 -2.46 16 2 C 0.08 1.31 2.55 -67.72 -0.17 1.13 16 3 H 0.09 1.66 6.64 -51.93 -0.34 1.31 16 4 N -0.84 -10.93 8.81 -4.67 -0.04 -10.97 16 5 C 0.22 3.60 2.21 -69.08 -0.15 3.45 16 6 H 0.06 0.97 7.74 -51.93 -0.40 0.57 16 7 C -0.02 -0.27 4.57 -104.32 -0.48 -0.75 16 8 C -0.13 -2.45 8.78 -39.44 -0.35 -2.80 16 9 C 0.08 1.38 11.18 -17.54 -0.20 1.18 16 10 N -0.50 -8.87 10.36 -13.25 -0.14 -9.01 16 11 C 0.08 1.19 11.18 -17.55 -0.20 1.00 16 12 C -0.17 -2.57 9.76 -39.44 -0.39 -2.96 16 13 N -0.58 -11.07 1.28 -170.30 -0.22 -11.28 16 14 C -0.28 -6.34 6.37 -15.06 -0.10 -6.44 16 15 H 0.09 2.26 6.48 -52.49 -0.34 1.92 16 16 C 0.05 1.14 5.33 -17.43 -0.09 1.05 16 17 N -0.88 -23.59 13.97 55.49 0.78 -22.81 16 18 Si 0.86 18.97 24.81 -169.99 -4.22 14.75 16 19 H -0.28 -5.95 6.66 56.52 0.38 -5.58 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 22 C 0.21 3.85 4.70 -6.83 -0.03 3.82 16 23 C 0.20 3.87 14.36 -20.76 -0.30 3.57 16 24 N -0.47 -9.48 18.54 42.15 0.78 -8.70 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.08 1.51 6.34 -51.93 -0.33 1.18 16 28 H 0.34 3.91 9.07 -39.29 -0.36 3.55 16 29 H 0.33 3.83 9.00 -39.29 -0.35 3.47 16 30 H 0.16 3.20 5.54 -52.49 -0.29 2.91 16 31 H 0.14 2.26 8.06 -52.49 -0.42 1.84 16 32 H 0.14 1.75 8.06 -52.49 -0.42 1.33 16 33 H 0.12 1.50 8.02 -52.48 -0.42 1.08 16 34 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 35 H 0.09 1.30 8.08 -51.93 -0.42 0.88 16 36 H 0.10 1.92 3.06 -51.93 -0.16 1.76 16 LS Contribution 299.33 15.07 4.51 4.51 Total: -1.00 -27.11 299.33 -4.92 -32.04 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -4.27 Total: 11.67 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -2.11 Total: -0.19 kcal Atomic # 7 Polarization: -63.94 SS G_CDS: 1.16 Total: -62.78 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -4.22 Total: 14.75 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -27.11 -4.92 -32.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043353119.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.922 kcal (2) G-P(sol) polarization free energy of solvation -27.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds