Wall clock time and date at job start Mon Mar 30 2020 05:08:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.08994 * 109.46900 * 2 1
4 4 N 1.46897 * 109.47141 * 120.00315 * 2 1 3
5 5 C 1.53003 * 109.47079 * 240.00213 * 2 1 3
6 6 H 1.08999 * 109.47410 * 300.00037 * 5 2 1
7 7 C 1.50697 * 109.47112 * 180.02562 * 5 2 1
8 8 C 1.38646 * 120.78748 * 290.82720 * 7 5 2
9 9 C 1.38216 * 119.16248 * 179.75700 * 8 7 5
10 10 N 1.31870 * 120.75771 * 0.53315 * 9 8 7
11 11 C 1.31869 * 121.73065 * 359.74013 * 10 9 8
12 12 C 1.38205 * 120.76119 * 359.97438 * 11 10 9
13 13 N 1.46497 * 109.46861 * 59.99738 * 5 2 1
14 14 C 1.36939 * 119.99948 * 53.43394 * 13 5 2
15 15 H 1.07991 * 120.00314 * 324.43478 * 14 13 5
16 16 C 1.38817 * 119.99962 * 144.43417 * 14 13 5
17 17 N 1.31618 * 120.00122 * 159.91889 * 16 14 13
18 18 Si 1.86803 * 119.99908 * 339.91180 * 16 14 13
19 19 H 1.48497 * 109.47041 * 94.71511 * 18 16 14
20 20 H 1.48504 * 109.47019 * 214.71404 * 18 16 14
21 21 H 1.48498 * 109.47213 * 334.71335 * 18 16 14
22 22 C 1.46504 * 120.00175 * 233.42718 * 13 5 2
23 23 C 1.47200 * 109.46702 * 85.04061 * 22 13 5
24 24 N 4.39782 * 42.87489 * 251.88901 * 2 1 3
25 25 H 1.09006 * 109.47579 * 179.97438 * 1 2 3
26 26 H 1.09002 * 109.47238 * 299.99677 * 1 2 3
27 27 H 1.09000 * 109.47492 * 59.99814 * 1 2 3
28 28 H 1.00897 * 111.00341 * 296.04552 * 4 2 1
29 29 H 1.00903 * 111.00115 * 59.99994 * 4 2 1
30 30 H 1.08001 * 120.42299 * 0.02562 * 8 7 5
31 31 H 1.07996 * 119.61894 * 180.30203 * 9 8 7
32 32 H 1.07994 * 119.61828 * 179.97438 * 11 10 9
33 33 H 1.08004 * 120.41481 * 180.02562 * 12 11 10
34 34 H 0.97000 * 120.00349 * 180.02562 * 17 16 14
35 35 H 1.08998 * 109.46951 * 325.04301 * 22 13 5
36 36 H 1.09001 * 109.47241 * 205.03968 * 22 13 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8932 1.0276 0.0000
4 7 2.0196 -0.6925 1.1994
5 6 2.0399 -0.7212 -1.2493
6 1 1.6766 -1.7489 -1.2494
7 6 3.5469 -0.7218 -1.2490
8 6 4.2570 0.4538 -1.4385
9 6 5.6386 0.4155 -1.4269
10 7 6.2802 -0.7228 -1.2490
11 6 5.6377 -1.8606 -1.0713
12 6 4.2562 -1.8988 -1.0649
13 7 1.5515 -0.0306 -2.4454
14 6 1.7679 1.3132 -2.5964
15 1 1.7450 1.9640 -1.7350
16 6 2.0168 1.8387 -3.8569
17 7 1.8355 3.1227 -4.0821
18 14 2.6091 0.7235 -5.2335
19 1 1.4460 0.2669 -6.0358
20 1 3.5496 1.4713 -6.1063
21 1 3.3028 -0.4541 -4.6528
22 6 0.8317 -0.7775 -3.4800
23 6 -0.5932 -0.8636 -3.1210
24 7 -1.6930 -0.9302 -2.8440
25 1 -0.3634 -1.0277 -0.0005
26 1 -0.3634 0.5138 0.8900
27 1 -0.3634 0.5138 -0.8899
28 1 1.7502 -0.1991 2.0372
29 1 1.6961 -1.6480 1.2227
30 1 3.7373 1.3885 -1.5889
31 1 6.1991 1.3276 -1.5689
32 1 6.1975 -2.7731 -0.9291
33 1 3.7357 -2.8337 -0.9185
34 1 2.0090 3.4899 -4.9630
35 1 1.2479 -1.7818 -3.5589
36 1 0.9352 -0.2650 -4.4364
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000043353119.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:08:10
Heat of formation + Delta-G solvation = 76.350978 kcal
Electronic energy + Delta-G solvation = -20091.462577 eV
Core-core repulsion = 17190.015573 eV
Total energy + Delta-G solvation = -2901.447004 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 260.133 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-41.04307 -39.13310 -37.23713 -35.88901 -33.80594 -33.08549 -31.79998 -29.90313
-28.75158 -27.93099 -24.40790 -24.05732 -23.07276 -21.14027 -19.74657 -18.24672
-17.66549 -17.17573 -17.05816 -16.47549 -16.17704 -15.50004 -15.37926 -15.06311
-14.66932 -14.55053 -14.34356 -14.19451 -14.13155 -13.83061 -13.44760 -13.26701
-13.03279 -12.80427 -12.58761 -12.42883 -12.24208 -11.81588 -11.63815 -11.50940
-10.68851 -10.18607 -10.10803 -9.73434 -9.51761 -9.05175 -8.15669 -5.59651
0.55026 0.68377 1.31255 1.50859 1.55792 1.80417 1.94902 2.42666
3.04455 3.10719 3.26315 3.40577 3.80999 3.85491 4.02698 4.14419
4.24404 4.36303 4.39202 4.50647 4.56515 4.62073 4.66272 4.71892
4.94848 5.04417 5.23907 5.30123 5.32546 5.42687 5.75610 5.95649
6.13609 6.19047 6.37053 6.71234 6.74101 6.86179 7.30885 7.53818
7.88459 9.01329
Molecular weight = 260.13amu
Principal moments of inertia in cm(-1)
A = 0.015065 B = 0.011242 C = 0.008099
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1858.135308 B = 2489.981106 C = 3456.373076
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C 0.095 3.905
3 H 0.059 0.941
4 N -0.835 5.835
5 C 0.217 3.783
6 H 0.095 0.905
7 C -0.022 4.022
8 C -0.152 4.152
9 C 0.066 3.934
10 N -0.517 5.517
11 C 0.076 3.924
12 C -0.159 4.159
13 N -0.585 5.585
14 C -0.242 4.242
15 H 0.060 0.940
16 C -0.006 4.006
17 N -0.938 5.938
18 Si 0.913 3.087
19 H -0.267 1.267
20 H -0.318 1.318
21 H -0.241 1.241
22 C 0.209 3.791
23 C 0.219 3.781
24 N -0.493 5.493
25 H 0.052 0.948
26 H 0.050 0.950
27 H 0.041 0.959
28 H 0.346 0.654
29 H 0.345 0.655
30 H 0.129 0.871
31 H 0.150 0.850
32 H 0.176 0.824
33 H 0.157 0.843
34 H 0.263 0.737
35 H 0.136 0.864
36 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.436 -12.119 6.049 13.973
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.223 4.223
2 C -0.018 4.018
3 H 0.077 0.923
4 N -0.365 5.365
5 C 0.111 3.889
6 H 0.113 0.887
7 C -0.032 4.032
8 C -0.172 4.172
9 C -0.089 4.089
10 N -0.228 5.228
11 C -0.081 4.081
12 C -0.179 4.179
13 N -0.305 5.305
14 C -0.372 4.372
15 H 0.078 0.922
16 C -0.204 4.204
17 N -0.581 5.581
18 Si 0.742 3.258
19 H -0.194 1.194
20 H -0.247 1.247
21 H -0.164 1.164
22 C 0.080 3.920
23 C -0.101 4.101
24 N -0.173 5.173
25 H 0.071 0.929
26 H 0.069 0.931
27 H 0.060 0.940
28 H 0.159 0.841
29 H 0.158 0.842
30 H 0.147 0.853
31 H 0.167 0.833
32 H 0.193 0.807
33 H 0.175 0.825
34 H 0.072 0.928
35 H 0.154 0.846
36 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges 3.479 -11.934 6.070 13.834
hybrid contribution -1.414 0.606 -0.905 1.784
sum 2.065 -11.328 5.165 12.621
Atomic orbital electron populations
1.22372 0.97698 1.01005 1.01223 1.21460 0.91672 0.98073 0.90584
0.92323 1.58783 1.67225 1.06714 1.03759 1.19537 0.87818 0.95852
0.85657 0.88681 1.20668 0.96925 0.92829 0.92812 1.22382 0.95039
1.00971 0.98780 1.22774 0.92350 0.96325 0.97497 1.67575 1.42200
0.99537 1.13443 1.23054 0.92465 0.96240 0.96365 1.22169 0.95318
0.98959 1.01431 1.44102 1.59728 1.05974 1.20746 1.18419 1.42932
0.81992 0.93828 0.92218 1.25893 0.98496 0.95947 1.00043 1.69936
1.50473 1.14490 1.23210 0.86343 0.78557 0.80621 0.80303 1.19406
1.24702 1.16373 1.19436 0.78974 1.00178 0.93399 1.31364 0.96193
0.90659 0.91859 1.81019 1.14351 1.11385 1.10567 0.92914 0.93116
0.93981 0.84105 0.84152 0.85292 0.83291 0.80719 0.82512 0.92792
0.84644 0.89827
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -5.01 9.02 71.98 0.65 -4.36 16
2 C 0.10 2.85 2.55 44.92 0.11 2.96 16
3 H 0.06 2.17 6.64 -2.39 -0.02 2.15 16
4 N -0.83 -19.34 8.81 -168.69 -1.49 -20.82 16
5 C 0.22 6.58 2.21 44.25 0.10 6.68 16
6 H 0.10 2.36 7.74 -2.39 -0.02 2.34 16
7 C -0.02 -0.70 4.57 -19.67 -0.09 -0.79 16
8 C -0.15 -5.56 8.78 22.36 0.20 -5.36 16
9 C 0.07 2.30 11.18 84.68 0.95 3.25 16
10 N -0.52 -17.16 10.36 -195.84 -2.03 -19.19 16
11 C 0.08 2.06 11.18 84.68 0.95 3.00 16
12 C -0.16 -4.11 9.76 22.36 0.22 -3.89 16
13 N -0.58 -21.46 1.28 -692.69 -0.89 -22.35 16
14 C -0.24 -11.17 6.37 84.03 0.54 -10.64 16
15 H 0.06 3.12 6.48 -2.92 -0.02 3.11 16
16 C -0.01 -0.30 5.33 84.86 0.45 0.16 16
17 N -0.94 -52.80 13.97 21.65 0.30 -52.50 16
18 Si 0.91 39.13 24.81 68.60 1.70 40.83 16
19 H -0.27 -10.69 6.66 99.48 0.66 -10.03 16
20 H -0.32 -14.79 7.11 99.48 0.71 -14.09 16
21 H -0.24 -9.45 7.11 99.48 0.71 -8.75 16
22 C 0.21 6.93 4.70 84.57 0.40 7.33 16
23 C 0.22 7.78 14.36 89.44 1.28 9.07 16
24 N -0.49 -19.14 18.54 20.01 0.37 -18.77 16
25 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16
26 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16
27 H 0.04 1.60 6.34 -2.39 -0.02 1.58 16
28 H 0.35 7.19 9.07 -89.70 -0.81 6.38 16
29 H 0.35 6.51 9.00 -89.69 -0.81 5.70 16
30 H 0.13 5.48 5.54 -2.91 -0.02 5.46 16
31 H 0.15 4.79 8.06 -2.91 -0.02 4.77 16
32 H 0.18 3.44 8.06 -2.91 -0.02 3.42 16
33 H 0.16 2.88 8.02 -2.91 -0.02 2.86 16
34 H 0.26 14.33 8.31 -92.71 -0.77 13.55 16
35 H 0.14 3.26 8.08 -2.39 -0.02 3.24 16
36 H 0.08 3.10 3.06 -2.39 -0.01 3.09 16
Total: -1.00 -60.93 299.33 3.19 -57.74
By element:
Atomic # 1 Polarization: 28.19 SS G_CDS: -0.53 Total: 27.66 kcal
Atomic # 6 Polarization: 1.65 SS G_CDS: 5.75 Total: 7.40 kcal
Atomic # 7 Polarization: -129.90 SS G_CDS: -3.73 Total: -133.63 kcal
Atomic # 14 Polarization: 39.13 SS G_CDS: 1.70 Total: 40.83 kcal
Total: -60.93 3.19 -57.74 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000043353119.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 134.092 kcal
(2) G-P(sol) polarization free energy of solvation -60.929 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.163 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.188 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.741 kcal
(6) G-S(sol) free energy of system = (1) + (5) 76.351 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds