Wall clock time and date at job start Mon Mar 30 2020 05:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.46900 * 2 1 4 4 N 1.46897 * 109.47141 * 120.00315 * 2 1 3 5 5 C 1.53003 * 109.47079 * 240.00213 * 2 1 3 6 6 H 1.08999 * 109.47410 * 300.00037 * 5 2 1 7 7 C 1.50697 * 109.47112 * 180.02562 * 5 2 1 8 8 C 1.38646 * 120.78748 * 290.82720 * 7 5 2 9 9 C 1.38216 * 119.16248 * 179.75700 * 8 7 5 10 10 N 1.31870 * 120.75771 * 0.53315 * 9 8 7 11 11 C 1.31869 * 121.73065 * 359.74013 * 10 9 8 12 12 C 1.38205 * 120.76119 * 359.97438 * 11 10 9 13 13 N 1.46497 * 109.46861 * 59.99738 * 5 2 1 14 14 C 1.36939 * 119.99948 * 53.43394 * 13 5 2 15 15 H 1.07991 * 120.00314 * 324.43478 * 14 13 5 16 16 C 1.38817 * 119.99962 * 144.43417 * 14 13 5 17 17 N 1.31618 * 120.00122 * 159.91889 * 16 14 13 18 18 Si 1.86803 * 119.99908 * 339.91180 * 16 14 13 19 19 H 1.48497 * 109.47041 * 94.71511 * 18 16 14 20 20 H 1.48504 * 109.47019 * 214.71404 * 18 16 14 21 21 H 1.48498 * 109.47213 * 334.71335 * 18 16 14 22 22 C 1.46504 * 120.00175 * 233.42718 * 13 5 2 23 23 C 1.47200 * 109.46702 * 85.04061 * 22 13 5 24 24 N 4.39782 * 42.87489 * 251.88901 * 2 1 3 25 25 H 1.09006 * 109.47579 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47238 * 299.99677 * 1 2 3 27 27 H 1.09000 * 109.47492 * 59.99814 * 1 2 3 28 28 H 1.00897 * 111.00341 * 296.04552 * 4 2 1 29 29 H 1.00903 * 111.00115 * 59.99994 * 4 2 1 30 30 H 1.08001 * 120.42299 * 0.02562 * 8 7 5 31 31 H 1.07996 * 119.61894 * 180.30203 * 9 8 7 32 32 H 1.07994 * 119.61828 * 179.97438 * 11 10 9 33 33 H 1.08004 * 120.41481 * 180.02562 * 12 11 10 34 34 H 0.97000 * 120.00349 * 180.02562 * 17 16 14 35 35 H 1.08998 * 109.46951 * 325.04301 * 22 13 5 36 36 H 1.09001 * 109.47241 * 205.03968 * 22 13 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0399 -0.7212 -1.2493 6 1 1.6766 -1.7489 -1.2494 7 6 3.5469 -0.7218 -1.2490 8 6 4.2570 0.4538 -1.4385 9 6 5.6386 0.4155 -1.4269 10 7 6.2802 -0.7228 -1.2490 11 6 5.6377 -1.8606 -1.0713 12 6 4.2562 -1.8988 -1.0649 13 7 1.5515 -0.0306 -2.4454 14 6 1.7679 1.3132 -2.5964 15 1 1.7450 1.9640 -1.7350 16 6 2.0168 1.8387 -3.8569 17 7 1.8355 3.1227 -4.0821 18 14 2.6091 0.7235 -5.2335 19 1 1.4460 0.2669 -6.0358 20 1 3.5496 1.4713 -6.1063 21 1 3.3028 -0.4541 -4.6528 22 6 0.8317 -0.7775 -3.4800 23 6 -0.5932 -0.8636 -3.1210 24 7 -1.6930 -0.9302 -2.8440 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.7502 -0.1991 2.0372 29 1 1.6961 -1.6480 1.2227 30 1 3.7373 1.3885 -1.5889 31 1 6.1991 1.3276 -1.5689 32 1 6.1975 -2.7731 -0.9291 33 1 3.7357 -2.8337 -0.9185 34 1 2.0090 3.4899 -4.9630 35 1 1.2479 -1.7818 -3.5589 36 1 0.9352 -0.2650 -4.4364 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043353119.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:10 Heat of formation + Delta-G solvation = 76.350978 kcal Electronic energy + Delta-G solvation = -20091.462577 eV Core-core repulsion = 17190.015573 eV Total energy + Delta-G solvation = -2901.447004 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.133 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.04307 -39.13310 -37.23713 -35.88901 -33.80594 -33.08549 -31.79998 -29.90313 -28.75158 -27.93099 -24.40790 -24.05732 -23.07276 -21.14027 -19.74657 -18.24672 -17.66549 -17.17573 -17.05816 -16.47549 -16.17704 -15.50004 -15.37926 -15.06311 -14.66932 -14.55053 -14.34356 -14.19451 -14.13155 -13.83061 -13.44760 -13.26701 -13.03279 -12.80427 -12.58761 -12.42883 -12.24208 -11.81588 -11.63815 -11.50940 -10.68851 -10.18607 -10.10803 -9.73434 -9.51761 -9.05175 -8.15669 -5.59651 0.55026 0.68377 1.31255 1.50859 1.55792 1.80417 1.94902 2.42666 3.04455 3.10719 3.26315 3.40577 3.80999 3.85491 4.02698 4.14419 4.24404 4.36303 4.39202 4.50647 4.56515 4.62073 4.66272 4.71892 4.94848 5.04417 5.23907 5.30123 5.32546 5.42687 5.75610 5.95649 6.13609 6.19047 6.37053 6.71234 6.74101 6.86179 7.30885 7.53818 7.88459 9.01329 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.015065 B = 0.011242 C = 0.008099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.135308 B = 2489.981106 C = 3456.373076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.095 3.905 3 H 0.059 0.941 4 N -0.835 5.835 5 C 0.217 3.783 6 H 0.095 0.905 7 C -0.022 4.022 8 C -0.152 4.152 9 C 0.066 3.934 10 N -0.517 5.517 11 C 0.076 3.924 12 C -0.159 4.159 13 N -0.585 5.585 14 C -0.242 4.242 15 H 0.060 0.940 16 C -0.006 4.006 17 N -0.938 5.938 18 Si 0.913 3.087 19 H -0.267 1.267 20 H -0.318 1.318 21 H -0.241 1.241 22 C 0.209 3.791 23 C 0.219 3.781 24 N -0.493 5.493 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.041 0.959 28 H 0.346 0.654 29 H 0.345 0.655 30 H 0.129 0.871 31 H 0.150 0.850 32 H 0.176 0.824 33 H 0.157 0.843 34 H 0.263 0.737 35 H 0.136 0.864 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.436 -12.119 6.049 13.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.018 4.018 3 H 0.077 0.923 4 N -0.365 5.365 5 C 0.111 3.889 6 H 0.113 0.887 7 C -0.032 4.032 8 C -0.172 4.172 9 C -0.089 4.089 10 N -0.228 5.228 11 C -0.081 4.081 12 C -0.179 4.179 13 N -0.305 5.305 14 C -0.372 4.372 15 H 0.078 0.922 16 C -0.204 4.204 17 N -0.581 5.581 18 Si 0.742 3.258 19 H -0.194 1.194 20 H -0.247 1.247 21 H -0.164 1.164 22 C 0.080 3.920 23 C -0.101 4.101 24 N -0.173 5.173 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.159 0.841 29 H 0.158 0.842 30 H 0.147 0.853 31 H 0.167 0.833 32 H 0.193 0.807 33 H 0.175 0.825 34 H 0.072 0.928 35 H 0.154 0.846 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.479 -11.934 6.070 13.834 hybrid contribution -1.414 0.606 -0.905 1.784 sum 2.065 -11.328 5.165 12.621 Atomic orbital electron populations 1.22372 0.97698 1.01005 1.01223 1.21460 0.91672 0.98073 0.90584 0.92323 1.58783 1.67225 1.06714 1.03759 1.19537 0.87818 0.95852 0.85657 0.88681 1.20668 0.96925 0.92829 0.92812 1.22382 0.95039 1.00971 0.98780 1.22774 0.92350 0.96325 0.97497 1.67575 1.42200 0.99537 1.13443 1.23054 0.92465 0.96240 0.96365 1.22169 0.95318 0.98959 1.01431 1.44102 1.59728 1.05974 1.20746 1.18419 1.42932 0.81992 0.93828 0.92218 1.25893 0.98496 0.95947 1.00043 1.69936 1.50473 1.14490 1.23210 0.86343 0.78557 0.80621 0.80303 1.19406 1.24702 1.16373 1.19436 0.78974 1.00178 0.93399 1.31364 0.96193 0.90659 0.91859 1.81019 1.14351 1.11385 1.10567 0.92914 0.93116 0.93981 0.84105 0.84152 0.85292 0.83291 0.80719 0.82512 0.92792 0.84644 0.89827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.01 9.02 71.98 0.65 -4.36 16 2 C 0.10 2.85 2.55 44.92 0.11 2.96 16 3 H 0.06 2.17 6.64 -2.39 -0.02 2.15 16 4 N -0.83 -19.34 8.81 -168.69 -1.49 -20.82 16 5 C 0.22 6.58 2.21 44.25 0.10 6.68 16 6 H 0.10 2.36 7.74 -2.39 -0.02 2.34 16 7 C -0.02 -0.70 4.57 -19.67 -0.09 -0.79 16 8 C -0.15 -5.56 8.78 22.36 0.20 -5.36 16 9 C 0.07 2.30 11.18 84.68 0.95 3.25 16 10 N -0.52 -17.16 10.36 -195.84 -2.03 -19.19 16 11 C 0.08 2.06 11.18 84.68 0.95 3.00 16 12 C -0.16 -4.11 9.76 22.36 0.22 -3.89 16 13 N -0.58 -21.46 1.28 -692.69 -0.89 -22.35 16 14 C -0.24 -11.17 6.37 84.03 0.54 -10.64 16 15 H 0.06 3.12 6.48 -2.92 -0.02 3.11 16 16 C -0.01 -0.30 5.33 84.86 0.45 0.16 16 17 N -0.94 -52.80 13.97 21.65 0.30 -52.50 16 18 Si 0.91 39.13 24.81 68.60 1.70 40.83 16 19 H -0.27 -10.69 6.66 99.48 0.66 -10.03 16 20 H -0.32 -14.79 7.11 99.48 0.71 -14.09 16 21 H -0.24 -9.45 7.11 99.48 0.71 -8.75 16 22 C 0.21 6.93 4.70 84.57 0.40 7.33 16 23 C 0.22 7.78 14.36 89.44 1.28 9.07 16 24 N -0.49 -19.14 18.54 20.01 0.37 -18.77 16 25 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 26 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.04 1.60 6.34 -2.39 -0.02 1.58 16 28 H 0.35 7.19 9.07 -89.70 -0.81 6.38 16 29 H 0.35 6.51 9.00 -89.69 -0.81 5.70 16 30 H 0.13 5.48 5.54 -2.91 -0.02 5.46 16 31 H 0.15 4.79 8.06 -2.91 -0.02 4.77 16 32 H 0.18 3.44 8.06 -2.91 -0.02 3.42 16 33 H 0.16 2.88 8.02 -2.91 -0.02 2.86 16 34 H 0.26 14.33 8.31 -92.71 -0.77 13.55 16 35 H 0.14 3.26 8.08 -2.39 -0.02 3.24 16 36 H 0.08 3.10 3.06 -2.39 -0.01 3.09 16 Total: -1.00 -60.93 299.33 3.19 -57.74 By element: Atomic # 1 Polarization: 28.19 SS G_CDS: -0.53 Total: 27.66 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: 5.75 Total: 7.40 kcal Atomic # 7 Polarization: -129.90 SS G_CDS: -3.73 Total: -133.63 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 1.70 Total: 40.83 kcal Total: -60.93 3.19 -57.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043353119.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.092 kcal (2) G-P(sol) polarization free energy of solvation -60.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds