Wall clock time and date at job start Mon Mar 30 2020 04:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09002 * 109.46985 * 2 1 4 4 C 1.50698 * 109.47078 * 240.00163 * 2 1 3 5 5 H 1.07997 * 120.00292 * 240.00177 * 4 2 1 6 6 C 1.37881 * 120.00400 * 59.99781 * 4 2 1 7 7 N 1.31519 * 119.99333 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00453 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47136 * 90.00072 * 8 6 4 10 10 H 1.48499 * 109.47500 * 210.00187 * 8 6 4 11 11 H 1.48501 * 109.47111 * 330.00291 * 8 6 4 12 12 N 1.46493 * 109.46970 * 120.00405 * 2 1 3 13 13 C 1.34786 * 119.99737 * 274.99863 * 12 2 1 14 14 O 1.21594 * 119.99623 * 0.02562 * 13 12 2 15 15 C 1.47514 * 119.99968 * 180.02562 * 13 12 2 16 16 C 1.39809 * 120.23795 * 359.97438 * 15 13 12 17 17 C 1.37315 * 120.09232 * 180.02562 * 16 15 13 18 18 C 1.40037 * 120.47788 * 359.97438 * 17 16 15 19 19 C 1.38945 * 119.22819 * 0.02748 * 18 17 16 20 20 C 1.37668 * 120.64788 * 0.22228 * 19 18 17 21 21 C 1.51258 * 108.46450 * 179.97438 * 19 18 17 22 22 C 1.53748 * 104.44603 * 359.97438 * 21 19 18 23 23 N 1.38999 * 129.11831 * 179.97438 * 18 17 16 24 24 H 1.08988 * 109.46807 * 300.00011 * 1 2 3 25 25 H 1.09004 * 109.46907 * 60.00163 * 1 2 3 26 26 H 1.09002 * 109.46985 * 180.02562 * 1 2 3 27 27 H 0.97001 * 119.99704 * 179.97438 * 7 6 4 28 28 H 0.96993 * 120.00505 * 95.00232 * 12 2 1 29 29 H 1.07999 * 119.95461 * 0.04849 * 16 15 13 30 30 H 1.07993 * 119.76386 * 180.02562 * 17 16 15 31 31 H 1.08002 * 119.99043 * 180.02562 * 20 19 18 32 32 H 1.09002 * 110.44406 * 118.73975 * 21 19 18 33 33 H 1.09007 * 110.44061 * 241.25498 * 21 19 18 34 34 H 1.08995 * 110.29951 * 241.07290 * 22 21 19 35 35 H 1.08999 * 110.38133 * 118.97323 * 22 21 19 36 36 H 0.96995 * 124.87757 * 0.02956 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6993 -0.2394 -2.4828 7 7 0.9427 0.8296 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 1.3448 -2.1615 -4.4125 10 1 2.4873 -0.1401 -5.1121 11 1 3.6309 -1.7565 -3.7120 12 7 2.0184 -0.6907 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8575 1.1614 2.4118 15 6 2.6393 -0.7136 3.5614 16 6 2.9732 -2.0700 3.5043 17 6 3.4306 -2.7144 4.6272 18 6 3.5675 -2.0225 5.8370 19 6 3.2344 -0.6746 5.8891 20 6 2.7703 -0.0225 4.7690 21 6 3.4721 -0.1764 7.2974 22 6 3.9862 -1.4093 8.0587 23 7 4.0075 -2.4901 7.0698 24 1 -0.3632 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.7087 1.1613 -3.4844 28 1 2.2491 -1.6318 1.1525 29 1 2.8716 -2.6117 2.5755 30 1 3.6874 -3.7621 4.5770 31 1 2.5149 1.0255 4.8214 32 1 4.2232 0.6135 7.3001 33 1 2.5409 0.1810 7.7370 34 1 3.3099 -1.6580 8.8764 35 1 4.9905 -1.2276 8.4414 36 1 4.2881 -3.4010 7.2495 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050392472.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:22 Heat of formation + Delta-G solvation = -9.075360 kcal Electronic energy + Delta-G solvation = -18650.095430 eV Core-core repulsion = 15712.651311 eV Total energy + Delta-G solvation = -2937.444119 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.40381 -38.67155 -35.92381 -34.69303 -32.38975 -31.99442 -29.95685 -28.75364 -28.22763 -25.20160 -23.60503 -22.39192 -21.70197 -20.74612 -19.21357 -17.73672 -17.19161 -15.93650 -15.76307 -15.61529 -15.08975 -14.55100 -14.01181 -13.71768 -13.64017 -13.23226 -12.73817 -12.46374 -12.37179 -12.30220 -12.26062 -12.04680 -11.59916 -11.05698 -10.90816 -10.75714 -10.67879 -10.28038 -10.18295 -10.05318 -9.00701 -8.96344 -8.74373 -8.49994 -7.85246 -7.34662 -6.07315 -4.16257 1.31254 1.52501 3.21725 3.27625 3.34274 3.36757 3.43756 4.16949 4.33283 4.42025 4.49954 4.62172 4.87837 5.05728 5.19049 5.24873 5.32185 5.47108 5.53291 5.61260 5.71454 5.79978 6.12777 6.34797 6.44057 6.63169 6.67367 6.90859 7.05175 7.13608 7.22825 7.55059 7.62187 7.65020 7.77085 7.99279 8.21340 8.76325 8.85426 9.23717 9.51521 10.98765 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.041721 B = 0.004067 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.961492 B = 6882.882497 C = 7332.305619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.049 0.951 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.705 5.705 13 C 0.549 3.451 14 O -0.559 6.559 15 C -0.175 4.175 16 C -0.040 4.040 17 C -0.190 4.190 18 C 0.209 3.791 19 C -0.188 4.188 20 C -0.004 4.004 21 C -0.082 4.082 22 C 0.118 3.882 23 N -0.744 5.744 24 H 0.015 0.985 25 H 0.090 0.910 26 H 0.026 0.974 27 H 0.264 0.736 28 H 0.387 0.613 29 H 0.130 0.870 30 H 0.120 0.880 31 H 0.132 0.868 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.567 -7.442 18.827 20.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.067 0.933 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.353 5.353 13 C 0.335 3.665 14 O -0.440 6.440 15 C -0.180 4.180 16 C -0.060 4.060 17 C -0.213 4.213 18 C 0.105 3.895 19 C -0.193 4.193 20 C -0.023 4.023 21 C -0.119 4.119 22 C -0.006 4.006 23 N -0.376 5.376 24 H 0.034 0.966 25 H 0.108 0.892 26 H 0.045 0.955 27 H 0.074 0.926 28 H 0.220 0.780 29 H 0.147 0.853 30 H 0.138 0.862 31 H 0.150 0.850 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 5.294 -6.420 18.831 20.588 hybrid contribution 0.540 -1.428 -0.806 1.727 sum 5.834 -7.848 18.025 20.507 Atomic orbital electron populations 1.22078 0.98475 0.99092 1.00903 1.18745 0.91029 0.94050 0.79952 0.93279 1.21232 1.32339 1.13172 0.90370 0.92098 1.24890 0.94861 0.94958 0.99025 1.69911 1.35953 1.22458 1.23804 0.86451 0.79158 0.79257 0.82238 1.20581 1.21095 1.19856 1.46441 1.64961 1.13459 1.10436 1.18082 0.78470 0.86658 0.83266 1.90710 1.52152 1.15820 1.85291 1.19908 1.08639 0.94453 0.94996 1.21000 0.93940 0.93406 0.97621 1.20198 1.09981 1.00009 0.91089 1.18490 0.91584 0.92856 0.86600 1.19742 1.09818 0.93862 0.95868 1.20396 0.92630 0.99815 0.89501 1.21001 1.02004 0.97310 0.91609 1.21784 1.00677 0.86656 0.91506 1.44613 1.73243 1.12160 1.07570 0.96584 0.89168 0.95510 0.92621 0.77993 0.85269 0.86199 0.84984 0.89806 0.89824 0.91631 0.91615 0.75203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.78 9.26 37.16 0.34 -3.44 16 2 C 0.26 6.96 2.56 -69.08 -0.18 6.79 16 3 H 0.05 1.49 7.58 -51.93 -0.39 1.09 16 4 C -0.53 -14.43 8.73 -34.44 -0.30 -14.73 16 5 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -25.31 11.32 55.43 0.63 -24.68 16 8 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 12 N -0.71 -15.59 5.02 -55.98 -0.28 -15.87 16 13 C 0.55 11.97 7.73 -12.48 -0.10 11.88 16 14 O -0.56 -14.24 16.01 5.28 0.08 -14.15 16 15 C -0.17 -3.04 5.88 -104.97 -0.62 -3.66 16 16 C -0.04 -0.58 9.51 -39.33 -0.37 -0.96 16 17 C -0.19 -2.37 10.06 -39.24 -0.39 -2.76 16 18 C 0.21 2.56 7.03 -83.68 -0.59 1.97 16 19 C -0.19 -2.47 6.22 -104.29 -0.65 -3.11 16 20 C 0.00 -0.06 9.58 -39.23 -0.38 -0.44 16 21 C -0.08 -0.76 6.95 -27.22 -0.19 -0.95 16 22 C 0.12 0.88 7.96 -3.65 -0.03 0.85 16 23 N -0.74 -6.71 6.49 -58.10 -0.38 -7.09 16 24 H 0.02 0.39 8.14 -51.94 -0.42 -0.04 16 25 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 26 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.39 7.38 6.57 -40.82 -0.27 7.12 16 29 H 0.13 1.68 6.40 -52.49 -0.34 1.34 16 30 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 31 H 0.13 2.12 7.65 -52.49 -0.40 1.72 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.41 2.74 8.96 -40.82 -0.37 2.38 16 LS Contribution 302.65 15.07 4.56 4.56 Total: -1.00 -32.48 302.65 -8.53 -41.00 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -4.58 Total: 7.21 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -3.54 Total: -6.86 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: -0.03 Total: -47.64 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: 0.08 Total: -14.15 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.48 -8.53 -41.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050392472.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.930 kcal (2) G-P(sol) polarization free energy of solvation -32.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds