Wall clock time and date at job start Mon Mar 30 2020 04:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48496 * 109.47341 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46983 * 120.00379 * 8 6 4 11 11 H 1.48503 * 109.47491 * 240.00192 * 8 6 4 12 12 N 1.46491 * 109.47168 * 239.99410 * 2 1 3 13 13 C 1.34776 * 120.00056 * 85.00588 * 12 2 1 14 14 O 1.21288 * 120.00081 * 359.97438 * 13 12 2 15 15 C 1.50701 * 120.00464 * 180.02562 * 13 12 2 16 16 H 1.08999 * 110.26309 * 42.06020 * 15 13 12 17 17 C 1.53755 * 110.29570 * 279.99697 * 15 13 12 18 18 C 1.51226 * 104.53381 * 241.06814 * 17 15 13 19 19 C 1.38168 * 130.98189 * 180.02562 * 18 17 15 20 20 C 1.38234 * 120.14797 * 179.97438 * 19 18 17 21 21 C 1.38292 * 119.83578 * 359.97438 * 20 19 18 22 22 C 1.37829 * 120.23221 * 359.97438 * 21 20 19 23 23 C 1.38595 * 108.53951 * 0.02562 * 18 17 15 24 24 N 1.39579 * 111.65324 * 359.97438 * 23 18 17 25 25 H 1.09001 * 109.47094 * 300.00451 * 1 2 3 26 26 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 27 27 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 28 28 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 29 29 H 0.97003 * 120.00221 * 265.00067 * 12 2 1 30 30 H 1.09000 * 110.42414 * 359.83125 * 17 15 13 31 31 H 1.09000 * 110.42008 * 122.18731 * 17 15 13 32 32 H 1.07998 * 119.93022 * 359.95196 * 19 18 17 33 33 H 1.07997 * 120.07963 * 179.97438 * 20 19 18 34 34 H 1.07999 * 119.88801 * 180.02562 * 21 20 19 35 35 H 1.08000 * 119.86385 * 180.02562 * 22 21 20 36 36 H 0.97002 * 124.95523 * 180.02562 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.7039 -0.2359 2.4828 7 7 0.9477 0.8334 2.6033 8 14 2.3328 -1.1119 4.0080 9 1 3.1571 -2.2791 3.6039 10 1 3.1606 -0.1759 4.8105 11 1 1.1811 -1.5768 4.8222 12 7 2.0183 -0.6907 -1.1960 13 6 2.1471 -0.0184 -2.3570 14 8 1.8583 1.1583 -2.4117 15 6 2.6489 -0.7290 -3.5876 16 1 2.1933 -1.7161 -3.6657 17 6 4.1811 -0.8505 -3.5458 18 6 4.6553 -0.0919 -4.7651 19 6 5.9284 0.1415 -5.2487 20 6 6.1077 0.8772 -6.4051 21 6 5.0091 1.3794 -7.0785 22 6 3.7371 1.1483 -6.6007 23 6 3.5476 0.4077 -5.4316 24 7 2.3592 0.0634 -4.7857 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 0.7164 1.1670 3.4843 29 1 2.2490 -1.6319 -1.1524 30 1 4.5742 -0.3942 -2.6373 31 1 4.4814 -1.8965 -3.6059 32 1 6.7853 -0.2514 -4.7218 33 1 7.1033 1.0593 -6.7819 34 1 5.1483 1.9539 -7.9823 35 1 2.8834 1.5430 -7.1315 36 1 1.4711 0.3122 -5.0861 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050392555.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:13 Heat of formation + Delta-G solvation = -7.016491 kcal Electronic energy + Delta-G solvation = -18876.090359 eV Core-core repulsion = 15938.735520 eV Total energy + Delta-G solvation = -2937.354840 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.53848 -38.57400 -35.95307 -34.71783 -32.50033 -31.86891 -29.84556 -28.92427 -28.16328 -25.29749 -23.89442 -22.05004 -21.19693 -20.87802 -19.47445 -17.57414 -17.23437 -16.10281 -15.70465 -15.59424 -15.08234 -14.52162 -13.91140 -13.79245 -13.71005 -13.44050 -12.77987 -12.63718 -12.43019 -12.12553 -11.97394 -11.73853 -11.44620 -11.11228 -10.97589 -10.79185 -10.76196 -10.41599 -10.30444 -10.27087 -9.08614 -9.03042 -8.68963 -8.58819 -7.96582 -7.23654 -6.15156 -4.24746 1.49346 1.69550 3.15623 3.21997 3.29604 3.32059 3.46293 3.90040 4.12066 4.35402 4.66353 4.76369 5.10558 5.12087 5.17379 5.21498 5.37194 5.51080 5.59124 5.61954 5.86636 5.97484 6.11448 6.41642 6.58771 6.67350 6.75903 6.79199 6.91282 7.10877 7.25160 7.40430 7.52105 7.65756 7.86324 7.92110 8.11168 8.61081 8.74693 9.06316 9.42979 10.90859 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.036478 B = 0.004306 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.403470 B = 6500.310589 C = 6903.704413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.705 5.705 13 C 0.487 3.513 14 O -0.543 6.543 15 C 0.128 3.872 16 H 0.095 0.905 17 C -0.071 4.071 18 C -0.172 4.172 19 C -0.060 4.060 20 C -0.181 4.181 21 C -0.076 4.076 22 C -0.184 4.184 23 C 0.208 3.792 24 N -0.717 5.717 25 H 0.090 0.910 26 H 0.013 0.987 27 H 0.027 0.973 28 H 0.264 0.736 29 H 0.389 0.611 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.115 0.885 36 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.355 -4.572 -15.317 17.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.572 4.572 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.354 5.354 13 C 0.270 3.730 14 O -0.421 6.421 15 C 0.018 3.982 16 H 0.113 0.887 17 C -0.109 4.109 18 C -0.177 4.177 19 C -0.078 4.078 20 C -0.201 4.201 21 C -0.095 4.095 22 C -0.207 4.207 23 C 0.103 3.897 24 N -0.347 5.347 25 H 0.109 0.891 26 H 0.032 0.968 27 H 0.046 0.954 28 H 0.074 0.926 29 H 0.221 0.779 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.134 0.866 36 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 5.962 -3.673 -15.043 16.593 hybrid contribution -0.117 -0.693 0.870 1.118 sum 5.845 -4.366 -14.173 15.941 Atomic orbital electron populations 1.22072 0.98458 0.99099 1.00852 1.18758 0.91016 0.94010 0.80017 0.93437 1.21251 1.32535 1.13167 0.90262 0.91938 1.24901 0.94802 0.94925 0.99118 1.69916 1.35924 1.22416 1.23821 0.86385 0.78629 0.79507 0.82523 1.19688 1.20861 1.20870 1.46535 1.64810 1.13560 1.10475 1.20824 0.79232 0.87950 0.85040 1.90673 1.50604 1.15863 1.84954 1.21379 0.96771 0.94747 0.85280 0.88724 1.20936 0.91600 1.00972 0.97395 1.19855 0.93127 1.05771 0.98926 1.20302 0.94962 0.97087 0.95472 1.20759 0.98464 1.03316 0.97551 1.20710 0.91830 0.98061 0.98901 1.20293 0.97779 1.05174 0.97434 1.18346 0.86561 0.92721 0.92031 1.44409 1.05769 1.59124 1.25399 0.89134 0.96798 0.95425 0.92604 0.77851 0.89146 0.89050 0.86353 0.86353 0.86266 0.86644 0.74757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 9.26 37.16 0.34 -3.28 16 2 C 0.26 6.66 2.56 -69.09 -0.18 6.48 16 3 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 4 C -0.53 -13.96 8.73 -34.44 -0.30 -14.26 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.76 5.31 -17.82 -0.09 1.66 16 7 N -0.88 -24.82 11.33 55.43 0.63 -24.20 16 8 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 9 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 N -0.71 -14.26 5.07 -54.94 -0.28 -14.54 16 13 C 0.49 9.56 6.88 -10.99 -0.08 9.49 16 14 O -0.54 -13.17 16.22 5.55 0.09 -13.08 16 15 C 0.13 1.88 4.11 -68.67 -0.28 1.59 16 16 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 17 C -0.07 -0.96 6.58 -27.23 -0.18 -1.14 16 18 C -0.17 -2.43 6.23 -104.26 -0.65 -3.08 16 19 C -0.06 -0.74 10.04 -39.61 -0.40 -1.14 16 20 C -0.18 -2.06 10.06 -39.56 -0.40 -2.46 16 21 C -0.08 -0.88 10.02 -39.71 -0.40 -1.27 16 22 C -0.18 -2.37 10.07 -39.19 -0.39 -2.77 16 23 C 0.21 3.03 7.03 -83.66 -0.59 2.45 16 24 N -0.72 -10.44 5.74 -52.79 -0.30 -10.74 16 25 H 0.09 2.44 6.08 -51.93 -0.32 2.13 16 26 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.39 6.64 8.54 -40.82 -0.35 6.29 16 30 H 0.09 1.34 7.70 -51.93 -0.40 0.94 16 31 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 33 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 36 H 0.41 5.54 8.96 -40.82 -0.37 5.17 16 LS Contribution 305.78 15.07 4.61 4.61 Total: -1.00 -31.61 305.78 -8.61 -40.22 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -4.75 Total: 10.02 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: -3.59 Total: -7.72 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: 0.05 Total: -49.47 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.09 Total: -13.08 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.61 -8.61 -40.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050392555.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.208 kcal (2) G-P(sol) polarization free energy of solvation -31.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds