Wall clock time and date at job start Mon Mar 30 2020 04:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48496 * 109.47341 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46983 * 120.00379 * 8 6 4 11 11 H 1.48503 * 109.47491 * 240.00192 * 8 6 4 12 12 N 1.46491 * 109.47168 * 239.99410 * 2 1 3 13 13 C 1.34776 * 120.00056 * 85.00588 * 12 2 1 14 14 O 1.21288 * 120.00081 * 359.97438 * 13 12 2 15 15 C 1.50701 * 120.00464 * 180.02562 * 13 12 2 16 16 H 1.08999 * 110.26309 * 42.06020 * 15 13 12 17 17 C 1.53755 * 110.29570 * 279.99697 * 15 13 12 18 18 C 1.51226 * 104.53381 * 241.06814 * 17 15 13 19 19 C 1.38168 * 130.98189 * 180.02562 * 18 17 15 20 20 C 1.38234 * 120.14797 * 179.97438 * 19 18 17 21 21 C 1.38292 * 119.83578 * 359.97438 * 20 19 18 22 22 C 1.37829 * 120.23221 * 359.97438 * 21 20 19 23 23 C 1.38595 * 108.53951 * 0.02562 * 18 17 15 24 24 N 1.39579 * 111.65324 * 359.97438 * 23 18 17 25 25 H 1.09001 * 109.47094 * 300.00451 * 1 2 3 26 26 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 27 27 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 28 28 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 29 29 H 0.97003 * 120.00221 * 265.00067 * 12 2 1 30 30 H 1.09000 * 110.42414 * 359.83125 * 17 15 13 31 31 H 1.09000 * 110.42008 * 122.18731 * 17 15 13 32 32 H 1.07998 * 119.93022 * 359.95196 * 19 18 17 33 33 H 1.07997 * 120.07963 * 179.97438 * 20 19 18 34 34 H 1.07999 * 119.88801 * 180.02562 * 21 20 19 35 35 H 1.08000 * 119.86385 * 180.02562 * 22 21 20 36 36 H 0.97002 * 124.95523 * 180.02562 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.7039 -0.2359 2.4828 7 7 0.9477 0.8334 2.6033 8 14 2.3328 -1.1119 4.0080 9 1 3.1571 -2.2791 3.6039 10 1 3.1606 -0.1759 4.8105 11 1 1.1811 -1.5768 4.8222 12 7 2.0183 -0.6907 -1.1960 13 6 2.1471 -0.0184 -2.3570 14 8 1.8583 1.1583 -2.4117 15 6 2.6489 -0.7290 -3.5876 16 1 2.1933 -1.7161 -3.6657 17 6 4.1811 -0.8505 -3.5458 18 6 4.6553 -0.0919 -4.7651 19 6 5.9284 0.1415 -5.2487 20 6 6.1077 0.8772 -6.4051 21 6 5.0091 1.3794 -7.0785 22 6 3.7371 1.1483 -6.6007 23 6 3.5476 0.4077 -5.4316 24 7 2.3592 0.0634 -4.7857 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 0.7164 1.1670 3.4843 29 1 2.2490 -1.6319 -1.1524 30 1 4.5742 -0.3942 -2.6373 31 1 4.4814 -1.8965 -3.6059 32 1 6.7853 -0.2514 -4.7218 33 1 7.1033 1.0593 -6.7819 34 1 5.1483 1.9539 -7.9823 35 1 2.8834 1.5430 -7.1315 36 1 1.4711 0.3122 -5.0861 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050392555.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:13 Heat of formation + Delta-G solvation = -28.459035 kcal Electronic energy + Delta-G solvation = -18877.020178 eV Core-core repulsion = 15938.735520 eV Total energy + Delta-G solvation = -2938.284658 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.70050 -40.03083 -37.16506 -36.49596 -34.36836 -32.93277 -31.39142 -30.05851 -29.46298 -27.36047 -25.18483 -23.13918 -22.55934 -22.14527 -21.16802 -19.12553 -18.36132 -17.69550 -17.32769 -16.61442 -16.59380 -16.08978 -15.38782 -15.26897 -14.80143 -14.55385 -14.46390 -14.00308 -13.71677 -13.59625 -13.18303 -13.16726 -12.94134 -12.83179 -12.75274 -12.37700 -12.29503 -12.11943 -11.69509 -11.51480 -11.11303 -10.66982 -10.53150 -9.79169 -9.63055 -8.29662 -8.17396 -6.36280 0.54824 0.72807 1.44633 1.45791 1.57889 1.68348 2.19301 2.42321 2.70628 3.00905 3.12436 3.61178 3.66446 3.96760 4.13827 4.24673 4.33061 4.53832 4.66039 4.70854 4.73551 4.84114 4.88292 4.97350 5.07015 5.20199 5.40447 5.47667 5.59317 5.64359 5.66110 5.74797 5.80316 5.89928 6.07829 6.29826 6.72032 6.81710 6.97778 7.31368 7.52256 8.88119 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.036478 B = 0.004306 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.403470 B = 6500.310589 C = 6903.704413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.270 3.730 3 H -0.007 1.007 4 C -0.544 4.544 5 H 0.077 0.923 6 C 0.013 3.987 7 N -0.920 5.920 8 Si 0.974 3.026 9 H -0.257 1.257 10 H -0.285 1.285 11 H -0.279 1.279 12 N -0.698 5.698 13 C 0.484 3.516 14 O -0.596 6.596 15 C 0.139 3.861 16 H 0.132 0.868 17 C -0.068 4.068 18 C -0.193 4.193 19 C -0.069 4.069 20 C -0.180 4.180 21 C -0.079 4.079 22 C -0.196 4.196 23 C 0.178 3.822 24 N -0.724 5.724 25 H 0.065 0.935 26 H 0.009 0.991 27 H 0.043 0.957 28 H 0.265 0.735 29 H 0.408 0.592 30 H 0.071 0.929 31 H 0.127 0.873 32 H 0.138 0.862 33 H 0.146 0.854 34 H 0.147 0.853 35 H 0.125 0.875 36 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.984 -6.535 -16.265 19.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.166 3.834 3 H 0.011 0.989 4 C -0.583 4.583 5 H 0.095 0.905 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.798 3.202 9 H -0.180 1.180 10 H -0.212 1.212 11 H -0.205 1.205 12 N -0.348 5.348 13 C 0.269 3.731 14 O -0.477 6.477 15 C 0.030 3.970 16 H 0.150 0.850 17 C -0.105 4.105 18 C -0.198 4.198 19 C -0.087 4.087 20 C -0.200 4.200 21 C -0.098 4.098 22 C -0.219 4.219 23 C 0.075 3.925 24 N -0.355 5.355 25 H 0.084 0.916 26 H 0.028 0.972 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.243 0.757 30 H 0.089 0.911 31 H 0.145 0.855 32 H 0.156 0.844 33 H 0.164 0.836 34 H 0.165 0.835 35 H 0.143 0.857 36 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 7.618 -5.679 -16.030 18.635 hybrid contribution -0.577 0.011 1.078 1.223 sum 7.041 -5.668 -14.953 17.472 Atomic orbital electron populations 1.21888 0.98293 0.99578 0.99386 1.18342 0.91122 0.91795 0.82154 0.98878 1.21590 1.32567 1.13499 0.90604 0.90452 1.25836 0.94884 0.95539 1.02472 1.70073 1.37187 1.24020 1.24544 0.85269 0.78080 0.78550 0.78267 1.18023 1.21155 1.20490 1.46249 1.64701 1.14315 1.09485 1.21857 0.77688 0.87430 0.86095 1.90644 1.52749 1.18465 1.85872 1.21413 0.97830 0.95286 0.82518 0.85019 1.20972 0.90267 1.02925 0.96364 1.20126 0.93830 1.06550 0.99280 1.20642 0.94983 0.97119 0.95983 1.21173 0.99809 1.02072 0.96916 1.21110 0.91227 0.97705 0.99714 1.20600 0.99029 1.04976 0.97246 1.18670 0.86686 0.94006 0.93135 1.44461 1.06086 1.59719 1.25210 0.91630 0.97195 0.93748 0.92607 0.75654 0.91077 0.85500 0.84422 0.83637 0.83493 0.85678 0.74617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.73 9.26 71.98 0.67 -6.06 16 2 C 0.27 13.96 2.56 44.25 0.11 14.07 16 3 H -0.01 -0.42 7.58 -2.39 -0.02 -0.43 16 4 C -0.54 -28.44 8.73 25.60 0.22 -28.22 16 5 H 0.08 3.72 7.74 -2.91 -0.02 3.70 16 6 C 0.01 0.67 5.31 84.66 0.45 1.12 16 7 N -0.92 -52.93 11.33 21.45 0.24 -52.69 16 8 Si 0.97 41.57 29.54 68.60 2.03 43.60 16 9 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 10 H -0.29 -12.24 7.11 99.48 0.71 -11.54 16 11 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 12 N -0.70 -28.17 5.07 -446.12 -2.26 -30.44 16 13 C 0.48 19.19 6.88 87.66 0.60 19.79 16 14 O -0.60 -30.07 16.22 -3.05 -0.05 -30.12 16 15 C 0.14 3.91 4.11 44.49 0.18 4.09 16 16 H 0.13 2.74 8.14 -2.39 -0.02 2.72 16 17 C -0.07 -1.71 6.58 30.27 0.20 -1.51 16 18 C -0.19 -5.19 6.23 -19.63 -0.12 -5.32 16 19 C -0.07 -1.56 10.04 22.25 0.22 -1.34 16 20 C -0.18 -3.61 10.06 22.28 0.22 -3.39 16 21 C -0.08 -1.63 10.02 22.19 0.22 -1.41 16 22 C -0.20 -4.82 10.07 22.52 0.23 -4.60 16 23 C 0.18 5.06 7.03 38.34 0.27 5.33 16 24 N -0.72 -20.72 5.74 -320.92 -1.84 -22.56 16 25 H 0.06 3.66 6.08 -2.39 -0.01 3.65 16 26 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.26 14.39 8.31 -92.70 -0.77 13.62 16 29 H 0.41 13.30 8.54 -92.71 -0.79 12.51 16 30 H 0.07 2.06 7.70 -2.39 -0.02 2.04 16 31 H 0.13 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 33 H 0.15 2.08 8.06 -2.91 -0.02 2.05 16 34 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 35 H 0.13 2.70 8.06 -2.91 -0.02 2.67 16 36 H 0.42 11.15 8.96 -92.71 -0.83 10.32 16 Total: -1.00 -70.69 305.78 1.08 -69.60 By element: Atomic # 1 Polarization: 30.56 SS G_CDS: -0.52 Total: 30.04 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: 3.48 Total: -7.44 kcal Atomic # 7 Polarization: -101.83 SS G_CDS: -3.86 Total: -105.69 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -0.05 Total: -30.12 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Total: -70.69 1.08 -69.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050392555.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.146 kcal (2) G-P(sol) polarization free energy of solvation -70.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds