Wall clock time and date at job start Mon Mar 30 2020 04:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42897 * 109.47022 * 2 1 4 4 C 1.52997 * 109.47066 * 240.00076 * 2 1 3 5 5 N 1.46502 * 109.47145 * 59.99931 * 4 2 1 6 6 C 1.36935 * 120.00089 * 270.00199 * 5 4 2 7 7 H 1.08003 * 120.00279 * 18.76366 * 6 5 4 8 8 C 1.38819 * 120.00368 * 198.76162 * 6 5 4 9 9 N 1.31618 * 119.99544 * 22.77114 * 8 6 5 10 10 Si 1.86795 * 120.00175 * 202.77228 * 8 6 5 11 11 H 1.48502 * 109.46989 * 90.00069 * 10 8 6 12 12 H 1.48506 * 109.46815 * 209.99853 * 10 8 6 13 13 H 1.48498 * 109.47486 * 329.99826 * 10 8 6 14 14 C 1.46503 * 120.00085 * 89.99814 * 5 4 2 15 15 C 1.47191 * 109.46962 * 83.99708 * 14 5 4 16 16 N 5.31621 * 119.46655 * 270.32115 * 2 1 3 17 17 C 1.50701 * 109.47237 * 120.00466 * 2 1 3 18 18 C 1.38232 * 120.00088 * 89.72249 * 17 2 1 19 19 C 1.38238 * 119.99773 * 179.78736 * 18 17 2 20 20 C 1.38242 * 120.00023 * 0.44661 * 19 18 17 21 21 C 1.38234 * 119.99517 * 359.80627 * 20 19 18 22 22 C 1.38233 * 120.00447 * 359.97438 * 21 20 19 23 23 H 1.09001 * 109.46723 * 299.99573 * 1 2 3 24 24 H 1.08996 * 109.47317 * 59.99757 * 1 2 3 25 25 H 1.08998 * 109.46933 * 180.02562 * 1 2 3 26 26 H 0.96694 * 114.00316 * 179.97438 * 3 2 1 27 27 H 1.08994 * 109.47482 * 180.02562 * 4 2 1 28 28 H 1.09000 * 109.47658 * 300.00344 * 4 2 1 29 29 H 0.96998 * 119.99913 * 180.02562 * 9 8 6 30 30 H 1.09004 * 109.46757 * 203.99776 * 14 5 4 31 31 H 1.08997 * 109.46835 * 323.99759 * 14 5 4 32 32 H 1.08001 * 120.00270 * 359.97438 * 18 17 2 33 33 H 1.08000 * 120.00044 * 180.27943 * 19 18 17 34 34 H 1.07999 * 120.00115 * 179.83657 * 20 19 18 35 35 H 1.08001 * 119.99718 * 179.97438 * 21 20 19 36 36 H 1.08000 * 119.99794 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 1.5517 -0.0306 -2.4454 6 6 0.3552 -0.3925 -3.0044 7 1 -0.3644 -0.9518 -2.4250 8 6 0.0670 -0.0404 -4.3159 9 7 1.0449 0.2237 -5.1564 10 14 -1.7085 0.0585 -4.8879 11 1 -2.2236 1.4337 -4.6675 12 1 -1.7818 -0.2718 -6.3339 13 1 -2.5315 -0.9078 -4.1171 14 6 2.3434 1.0473 -3.0435 15 6 3.3603 0.4708 -3.9380 16 7 4.1452 0.0259 -4.6284 17 6 2.0325 -0.7105 1.2304 18 6 2.2574 -2.0740 1.1978 19 6 2.7224 -2.7250 2.3251 20 6 2.9537 -2.0139 3.4879 21 6 2.7237 -0.6512 3.5219 22 6 2.2630 0.0005 2.3933 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 2.9703 1.4237 0.0004 27 1 3.1300 -0.7217 -1.2491 28 1 1.6767 -1.7489 -1.2494 29 1 0.8436 0.4701 -6.0727 30 1 1.6884 1.7054 -3.6144 31 1 2.8344 1.6178 -2.2552 32 1 2.0727 -2.6303 0.2906 33 1 2.9025 -3.7895 2.2983 34 1 3.3144 -2.5229 4.3694 35 1 2.9040 -0.0958 4.4304 36 1 2.0830 1.0650 2.4201 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052096896.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:42 Heat of formation + Delta-G solvation = 28.340382 kcal Electronic energy + Delta-G solvation = -19548.191902 eV Core-core repulsion = 16612.370251 eV Total energy + Delta-G solvation = -2935.821651 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.67882 -37.36213 -35.61980 -34.14278 -32.30860 -31.10913 -30.71053 -29.03496 -26.95815 -26.22278 -23.15016 -22.52563 -21.42472 -19.69943 -17.55287 -17.21205 -16.34554 -15.70258 -15.10720 -14.80604 -14.45657 -14.26192 -13.97969 -13.61787 -13.31247 -13.08190 -12.51236 -12.12592 -11.86495 -11.83305 -11.65114 -11.44395 -11.19597 -11.14386 -10.98086 -10.87657 -10.65537 -10.44252 -10.15689 -10.02555 -9.81858 -9.58679 -8.80322 -8.74551 -8.51323 -7.09461 -5.96346 -3.34174 1.46592 1.51839 3.33579 3.41265 3.43010 3.90513 4.10488 4.38441 4.48492 4.70010 4.88993 5.06010 5.09988 5.21991 5.25390 5.55206 5.58309 5.62306 5.68562 5.74030 5.82313 6.07605 6.14244 6.27807 6.38973 6.46416 6.52800 6.60908 6.62967 6.68606 6.79814 7.01812 7.04613 7.13418 7.66071 8.10757 8.16212 8.96058 9.20905 9.62651 10.08126 11.11888 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.024341 B = 0.006183 C = 0.005573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.068862 B = 4527.312976 C = 5022.786045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.151 3.849 3 O -0.545 6.545 4 C 0.126 3.874 5 N -0.571 5.571 6 C -0.266 4.266 7 H 0.082 0.918 8 C 0.006 3.994 9 N -0.897 5.897 10 Si 0.903 3.097 11 H -0.285 1.285 12 H -0.293 1.293 13 H -0.279 1.279 14 C 0.261 3.739 15 C 0.247 3.753 16 N -0.510 5.510 17 C -0.103 4.103 18 C -0.113 4.113 19 C -0.123 4.123 20 C -0.130 4.130 21 C -0.126 4.126 22 C -0.107 4.107 23 H 0.042 0.958 24 H 0.095 0.905 25 H 0.058 0.942 26 H 0.366 0.634 27 H 0.042 0.958 28 H 0.062 0.938 29 H 0.259 0.741 30 H 0.107 0.893 31 H 0.063 0.937 32 H 0.127 0.873 33 H 0.118 0.882 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.216 -0.362 15.774 15.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.108 3.892 3 O -0.350 6.350 4 C -0.002 4.002 5 N -0.290 5.290 6 C -0.394 4.394 7 H 0.100 0.900 8 C -0.193 4.193 9 N -0.540 5.540 10 Si 0.733 3.267 11 H -0.212 1.212 12 H -0.220 1.220 13 H -0.204 1.204 14 C 0.131 3.869 15 C -0.071 4.071 16 N -0.192 5.192 17 C -0.104 4.104 18 C -0.131 4.131 19 C -0.141 4.141 20 C -0.148 4.148 21 C -0.144 4.144 22 C -0.125 4.125 23 H 0.061 0.939 24 H 0.113 0.887 25 H 0.077 0.923 26 H 0.212 0.788 27 H 0.060 0.940 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.125 0.875 31 H 0.081 0.919 32 H 0.145 0.855 33 H 0.136 0.864 34 H 0.133 0.867 35 H 0.135 0.865 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.681 -0.864 14.553 14.675 hybrid contribution -0.641 -0.149 -0.188 0.684 sum 1.040 -1.013 14.365 14.438 Atomic orbital electron populations 1.21713 0.91645 1.01783 1.03149 1.20898 0.95590 0.81878 0.90863 1.86565 1.25562 1.26031 1.96801 1.21530 0.96453 0.95508 0.86668 1.43778 1.20986 1.37413 1.26842 1.19260 0.91490 1.34120 0.94554 0.90044 1.24902 0.97619 1.01498 0.95301 1.69935 1.29854 1.49843 1.04386 0.86271 0.84670 0.78149 0.77597 1.21156 1.21987 1.20406 1.18246 0.88145 0.89680 0.90834 1.30683 0.91165 0.92580 0.92712 1.80806 1.16474 1.10088 1.11794 1.20867 0.98472 0.94409 0.96612 1.21230 0.98871 0.94344 0.98616 1.21135 1.00012 0.99706 0.93288 1.21095 1.01189 0.94534 0.97960 1.21116 1.00348 0.94681 0.98279 1.21049 0.98831 1.00432 0.92208 0.93914 0.88672 0.92264 0.78833 0.93992 0.91950 0.93065 0.87492 0.91917 0.85517 0.86399 0.86673 0.86547 0.85577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 7.82 37.16 0.29 -1.77 16 2 C 0.15 2.34 0.99 -91.77 -0.09 2.25 16 3 O -0.55 -8.21 10.59 -35.23 -0.37 -8.58 16 4 C 0.13 2.25 4.25 -4.04 -0.02 2.23 16 5 N -0.57 -12.23 2.20 -176.58 -0.39 -12.62 16 6 C -0.27 -6.36 7.88 -15.06 -0.12 -6.48 16 7 H 0.08 1.90 7.05 -52.48 -0.37 1.53 16 8 C 0.01 0.16 4.81 -17.43 -0.08 0.07 16 9 N -0.90 -24.33 9.61 55.49 0.53 -23.79 16 10 Si 0.90 20.41 29.61 -169.99 -5.03 15.38 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 14 C 0.26 5.49 5.20 -6.83 -0.04 5.46 16 15 C 0.25 5.88 13.61 -20.76 -0.28 5.60 16 16 N -0.51 -13.11 18.54 42.16 0.78 -12.33 16 17 C -0.10 -1.42 4.80 -104.62 -0.50 -1.93 16 18 C -0.11 -1.51 9.14 -39.58 -0.36 -1.87 16 19 C -0.12 -1.45 10.05 -39.58 -0.40 -1.85 16 20 C -0.13 -1.43 10.05 -39.58 -0.40 -1.83 16 21 C -0.13 -1.42 10.05 -39.58 -0.40 -1.82 16 22 C -0.11 -1.36 9.35 -39.58 -0.37 -1.73 16 23 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.09 1.79 6.17 -51.93 -0.32 1.47 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.37 4.44 8.81 45.56 0.40 4.84 16 27 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 28 H 0.06 1.13 6.41 -51.93 -0.33 0.80 16 29 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.11 2.46 6.56 -51.93 -0.34 2.12 16 31 H 0.06 1.09 6.80 -51.93 -0.35 0.74 16 32 H 0.13 1.68 6.17 -52.49 -0.32 1.36 16 33 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.13 1.53 7.48 -52.49 -0.39 1.14 16 LS Contribution 302.17 15.07 4.55 4.55 Total: -1.00 -29.29 302.17 -6.39 -35.68 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -3.70 Total: 5.38 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -2.77 Total: -3.67 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: 0.93 Total: -48.75 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: -0.37 Total: -8.58 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.03 Total: 15.38 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.29 -6.39 -35.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052096896.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.020 kcal (2) G-P(sol) polarization free energy of solvation -29.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds