Wall clock time and date at job start Mon Mar 30 2020 04:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42897 * 109.47022 * 2 1 4 4 C 1.52997 * 109.47066 * 240.00076 * 2 1 3 5 5 N 1.46502 * 109.47145 * 59.99931 * 4 2 1 6 6 C 1.36935 * 120.00089 * 270.00199 * 5 4 2 7 7 H 1.08003 * 120.00279 * 18.76366 * 6 5 4 8 8 C 1.38819 * 120.00368 * 198.76162 * 6 5 4 9 9 N 1.31618 * 119.99544 * 22.77114 * 8 6 5 10 10 Si 1.86795 * 120.00175 * 202.77228 * 8 6 5 11 11 H 1.48502 * 109.46989 * 90.00069 * 10 8 6 12 12 H 1.48506 * 109.46815 * 209.99853 * 10 8 6 13 13 H 1.48498 * 109.47486 * 329.99826 * 10 8 6 14 14 C 1.46503 * 120.00085 * 89.99814 * 5 4 2 15 15 C 1.47191 * 109.46962 * 83.99708 * 14 5 4 16 16 N 5.31621 * 119.46655 * 270.32115 * 2 1 3 17 17 C 1.50701 * 109.47237 * 120.00466 * 2 1 3 18 18 C 1.38232 * 120.00088 * 89.72249 * 17 2 1 19 19 C 1.38238 * 119.99773 * 179.78736 * 18 17 2 20 20 C 1.38242 * 120.00023 * 0.44661 * 19 18 17 21 21 C 1.38234 * 119.99517 * 359.80627 * 20 19 18 22 22 C 1.38233 * 120.00447 * 359.97438 * 21 20 19 23 23 H 1.09001 * 109.46723 * 299.99573 * 1 2 3 24 24 H 1.08996 * 109.47317 * 59.99757 * 1 2 3 25 25 H 1.08998 * 109.46933 * 180.02562 * 1 2 3 26 26 H 0.96694 * 114.00316 * 179.97438 * 3 2 1 27 27 H 1.08994 * 109.47482 * 180.02562 * 4 2 1 28 28 H 1.09000 * 109.47658 * 300.00344 * 4 2 1 29 29 H 0.96998 * 119.99913 * 180.02562 * 9 8 6 30 30 H 1.09004 * 109.46757 * 203.99776 * 14 5 4 31 31 H 1.08997 * 109.46835 * 323.99759 * 14 5 4 32 32 H 1.08001 * 120.00270 * 359.97438 * 18 17 2 33 33 H 1.08000 * 120.00044 * 180.27943 * 19 18 17 34 34 H 1.07999 * 120.00115 * 179.83657 * 20 19 18 35 35 H 1.08001 * 119.99718 * 179.97438 * 21 20 19 36 36 H 1.08000 * 119.99794 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 1.5517 -0.0306 -2.4454 6 6 0.3552 -0.3925 -3.0044 7 1 -0.3644 -0.9518 -2.4250 8 6 0.0670 -0.0404 -4.3159 9 7 1.0449 0.2237 -5.1564 10 14 -1.7085 0.0585 -4.8879 11 1 -2.2236 1.4337 -4.6675 12 1 -1.7818 -0.2718 -6.3339 13 1 -2.5315 -0.9078 -4.1171 14 6 2.3434 1.0473 -3.0435 15 6 3.3603 0.4708 -3.9380 16 7 4.1452 0.0259 -4.6284 17 6 2.0325 -0.7105 1.2304 18 6 2.2574 -2.0740 1.1978 19 6 2.7224 -2.7250 2.3251 20 6 2.9537 -2.0139 3.4879 21 6 2.7237 -0.6512 3.5219 22 6 2.2630 0.0005 2.3933 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 2.9703 1.4237 0.0004 27 1 3.1300 -0.7217 -1.2491 28 1 1.6767 -1.7489 -1.2494 29 1 0.8436 0.4701 -6.0727 30 1 1.6884 1.7054 -3.6144 31 1 2.8344 1.6178 -2.2552 32 1 2.0727 -2.6303 0.2906 33 1 2.9025 -3.7895 2.2983 34 1 3.3144 -2.5229 4.3694 35 1 2.9040 -0.0958 4.4304 36 1 2.0830 1.0650 2.4201 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052096896.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:42 Heat of formation + Delta-G solvation = 11.055504 kcal Electronic energy + Delta-G solvation = -19548.941430 eV Core-core repulsion = 16612.370251 eV Total energy + Delta-G solvation = -2936.571179 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.76326 -38.66233 -37.21951 -35.95664 -33.67515 -32.70746 -31.64442 -30.23681 -28.59010 -27.86985 -24.50135 -23.60732 -22.71290 -20.89813 -19.28176 -18.44692 -17.82724 -16.97927 -16.74343 -16.05645 -15.70682 -15.56108 -15.45049 -15.03105 -14.56600 -14.20984 -13.89862 -13.61648 -13.56039 -13.13305 -13.10071 -13.06291 -12.77984 -12.69882 -12.44983 -12.34320 -12.09343 -11.81196 -11.75502 -11.67587 -11.48055 -10.96134 -10.47655 -9.71914 -9.57878 -8.86670 -7.89260 -5.25556 0.52772 0.60156 1.52668 1.56815 1.62198 2.28153 2.51660 2.61893 2.97525 3.28305 3.52525 3.65992 3.93134 4.05331 4.15735 4.25578 4.31496 4.33493 4.44202 4.72588 4.78855 4.90252 4.97993 5.08045 5.12548 5.16900 5.26551 5.29894 5.31501 5.60356 5.68876 5.71391 5.74245 5.82951 6.21694 6.28548 7.05436 7.08168 7.33284 7.80725 8.22705 9.17001 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.024341 B = 0.006183 C = 0.005573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.068862 B = 4527.312976 C = 5022.786045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.166 3.834 3 O -0.553 6.553 4 C 0.126 3.874 5 N -0.580 5.580 6 C -0.250 4.250 7 H 0.086 0.914 8 C -0.044 4.044 9 N -0.930 5.930 10 Si 0.957 3.043 11 H -0.284 1.284 12 H -0.310 1.310 13 H -0.270 1.270 14 C 0.264 3.736 15 C 0.259 3.741 16 N -0.550 5.550 17 C -0.115 4.115 18 C -0.129 4.129 19 C -0.129 4.129 20 C -0.128 4.128 21 C -0.126 4.126 22 C -0.113 4.113 23 H 0.052 0.948 24 H 0.068 0.932 25 H 0.060 0.940 26 H 0.379 0.621 27 H 0.047 0.953 28 H 0.057 0.943 29 H 0.247 0.753 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.119 0.881 33 H 0.136 0.864 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.286 -0.518 18.571 18.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.123 3.877 3 O -0.359 6.359 4 C 0.000 4.000 5 N -0.299 5.299 6 C -0.379 4.379 7 H 0.104 0.896 8 C -0.240 4.240 9 N -0.576 5.576 10 Si 0.787 3.213 11 H -0.211 1.211 12 H -0.238 1.238 13 H -0.195 1.195 14 C 0.134 3.866 15 C -0.059 4.059 16 N -0.232 5.232 17 C -0.116 4.116 18 C -0.147 4.147 19 C -0.147 4.147 20 C -0.146 4.146 21 C -0.144 4.144 22 C -0.131 4.131 23 H 0.071 0.929 24 H 0.087 0.913 25 H 0.078 0.922 26 H 0.228 0.772 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.107 0.893 31 H 0.122 0.878 32 H 0.137 0.863 33 H 0.154 0.846 34 H 0.161 0.839 35 H 0.160 0.840 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.749 -1.028 17.404 17.522 hybrid contribution -0.629 -0.149 -0.909 1.115 sum 1.120 -1.177 16.495 16.575 Atomic orbital electron populations 1.21639 0.92503 1.01593 1.02265 1.20482 0.94869 0.81910 0.90421 1.86534 1.26987 1.25616 1.96762 1.21668 0.96708 0.95313 0.86291 1.43957 1.20518 1.37944 1.27525 1.19538 0.92282 1.31990 0.94102 0.89600 1.25451 1.00024 1.02734 0.95770 1.70066 1.31052 1.52430 1.04027 0.85417 0.81740 0.78100 0.76067 1.21077 1.23793 1.19453 1.18420 0.87463 0.89453 0.91264 1.31308 0.90706 0.91684 0.92167 1.80796 1.17999 1.11435 1.12964 1.20643 1.00063 0.94593 0.96327 1.21283 0.99883 0.94327 0.99196 1.21399 0.99417 1.00800 0.93036 1.21468 0.99965 0.94600 0.98519 1.21441 0.99241 0.95073 0.98670 1.21142 0.98986 1.00678 0.92259 0.92895 0.91293 0.92155 0.77243 0.93489 0.92523 0.94332 0.89294 0.87801 0.86288 0.84611 0.83947 0.84038 0.85206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.87 7.82 71.99 0.56 -3.31 16 2 C 0.17 4.89 0.99 -11.54 -0.01 4.87 16 3 O -0.55 -15.48 10.59 -148.98 -1.58 -17.05 16 4 C 0.13 4.38 4.25 86.38 0.37 4.75 16 5 N -0.58 -24.49 2.20 -712.56 -1.57 -26.06 16 6 C -0.25 -11.87 7.88 84.04 0.66 -11.21 16 7 H 0.09 3.96 7.05 -2.91 -0.02 3.94 16 8 C -0.04 -2.26 4.81 84.86 0.41 -1.85 16 9 N -0.93 -51.32 9.61 21.65 0.21 -51.11 16 10 Si 0.96 42.44 29.61 68.60 2.03 44.47 16 11 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 12 H -0.31 -14.53 7.11 99.48 0.71 -13.83 16 13 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 14 C 0.26 10.96 5.20 84.57 0.44 11.40 16 15 C 0.26 12.32 13.61 89.44 1.22 13.54 16 16 N -0.55 -28.47 18.54 20.00 0.37 -28.09 16 17 C -0.12 -2.97 4.80 -19.87 -0.10 -3.07 16 18 C -0.13 -3.23 9.14 22.27 0.20 -3.02 16 19 C -0.13 -2.69 10.05 22.27 0.22 -2.46 16 20 C -0.13 -2.35 10.05 22.27 0.22 -2.12 16 21 C -0.13 -2.40 10.05 22.27 0.22 -2.18 16 22 C -0.11 -2.55 9.35 22.27 0.21 -2.34 16 23 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.07 2.54 6.17 -2.39 -0.01 2.52 16 25 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.38 8.26 8.81 -74.06 -0.65 7.61 16 27 H 0.05 1.58 8.07 -2.39 -0.02 1.56 16 28 H 0.06 2.03 6.41 -2.39 -0.02 2.01 16 29 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 30 H 0.09 4.10 6.56 -2.39 -0.02 4.08 16 31 H 0.10 3.42 6.80 -2.39 -0.02 3.41 16 32 H 0.12 3.08 6.17 -2.91 -0.02 3.06 16 33 H 0.14 2.27 8.06 -2.91 -0.02 2.24 16 34 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 35 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 36 H 0.13 2.80 7.48 -2.91 -0.02 2.78 16 Total: -1.00 -62.30 302.17 4.55 -57.75 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: 0.45 Total: 17.09 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: 4.63 Total: 3.00 kcal Atomic # 7 Polarization: -104.27 SS G_CDS: -0.99 Total: -105.26 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -1.58 Total: -17.05 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -62.30 4.55 -57.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052096896.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.806 kcal (2) G-P(sol) polarization free energy of solvation -62.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds