Wall clock time and date at job start Mon Mar 30 2020 05:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47113 * 2 1 4 4 C 1.53006 * 109.47283 * 119.99686 * 2 1 3 5 5 N 1.46893 * 109.47051 * 174.47997 * 4 2 1 6 6 C 1.46899 * 110.99880 * 163.07547 * 5 4 2 7 7 C 1.50700 * 109.47620 * 287.84549 * 6 5 4 8 8 H 1.07998 * 119.99333 * 2.55483 * 7 6 5 9 9 C 1.37871 * 120.00369 * 182.55474 * 7 6 5 10 10 N 1.31514 * 119.99862 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00108 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47296 * 359.97438 * 11 9 7 13 13 H 1.48491 * 109.47293 * 119.99969 * 11 9 7 14 14 H 1.48509 * 109.47050 * 240.00007 * 11 9 7 15 15 C 1.38406 * 111.00513 * 287.03323 * 5 4 2 16 16 N 1.32731 * 120.16972 * 328.99169 * 15 5 4 17 17 C 1.32113 * 120.00009 * 180.02562 * 16 15 5 18 18 C 1.38644 * 120.35195 * 359.97438 * 17 16 15 19 19 N 1.31837 * 120.35627 * 359.97438 * 18 17 16 20 20 C 1.33045 * 119.98562 * 0.02698 * 19 18 17 21 21 C 1.43202 * 120.17160 * 179.97438 * 20 19 18 22 22 N 4.69331 * 131.70150 * 359.91791 * 3 1 2 23 23 H 1.08994 * 109.47132 * 300.00290 * 1 2 3 24 24 H 1.09000 * 109.47251 * 60.00347 * 1 2 3 25 25 H 1.08998 * 109.46933 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47456 * 239.99621 * 2 1 3 27 27 H 1.09002 * 109.47111 * 184.82544 * 3 2 1 28 28 H 1.09006 * 109.46975 * 304.81962 * 3 2 1 29 29 H 1.08997 * 109.47388 * 64.82778 * 3 2 1 30 30 H 1.08993 * 109.46728 * 54.48430 * 4 2 1 31 31 H 1.09000 * 109.46821 * 294.48093 * 4 2 1 32 32 H 1.08995 * 109.47127 * 47.84807 * 6 5 4 33 33 H 1.09002 * 109.47050 * 167.84308 * 6 5 4 34 34 H 0.97009 * 120.00039 * 179.97438 * 10 9 7 35 35 H 1.08000 * 119.82556 * 180.27739 * 17 16 15 36 36 H 1.08008 * 119.82620 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5029 -0.8376 1.1845 6 6 4.0653 -1.1480 2.5056 7 6 3.9740 0.0694 3.3892 8 1 3.5042 0.9695 3.0212 9 6 4.4901 0.0341 4.6671 10 7 5.0627 -1.0619 5.1150 11 14 4.3762 1.5429 5.7625 12 1 3.6921 2.6373 5.0281 13 1 3.6041 1.2090 6.9862 14 1 5.7427 1.9820 6.1439 15 6 3.8844 -1.7831 0.2485 16 7 3.1082 -2.8320 0.0054 17 6 3.4759 -3.7328 -0.8885 18 6 4.6706 -3.5893 -1.5771 19 7 5.4517 -2.5524 -1.3474 20 6 5.0950 -1.6370 -0.4502 21 6 5.9406 -0.5094 -0.1972 22 7 6.6124 0.3841 0.0050 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 3.1266 1.4437 -0.0864 28 1 1.6078 1.9807 -0.8437 29 1 1.7490 1.9308 0.9300 30 1 1.5983 -1.7163 1.3001 31 1 1.7596 -0.1534 2.1365 32 1 3.5044 -1.9667 2.9561 33 1 5.1098 -1.4401 2.3964 34 1 5.4262 -1.0867 6.0140 35 1 2.8401 -4.5828 -1.0873 36 1 4.9627 -4.3306 -2.3064 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054376805.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:03 Heat of formation + Delta-G solvation = 82.746898 kcal Electronic energy + Delta-G solvation = -19561.554210 eV Core-core repulsion = 16660.384554 eV Total energy + Delta-G solvation = -2901.169656 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.133 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.15826 -37.73260 -36.11646 -34.53559 -33.80681 -32.65153 -30.54323 -27.35777 -26.77354 -25.79885 -25.11311 -23.42825 -21.27540 -19.76018 -19.35937 -17.75992 -16.82233 -16.16386 -15.41805 -14.90301 -14.62586 -14.52395 -13.96146 -13.80548 -13.32937 -12.80831 -12.57111 -12.46055 -12.40317 -12.31024 -11.93404 -11.75669 -11.65410 -11.21713 -11.17369 -10.92151 -10.83243 -10.62699 -10.41444 -10.14675 -10.06853 -9.73431 -9.10658 -9.02669 -8.57427 -7.75280 -6.16388 -4.19194 0.56528 1.17036 3.03872 3.19486 3.26061 3.34033 3.38255 3.62845 4.04771 4.12502 4.37476 4.39105 4.67726 4.98540 5.19453 5.20851 5.21754 5.31315 5.42097 5.57483 5.88540 5.97828 6.04413 6.12337 6.21101 6.30273 6.39273 6.50148 6.70844 6.78445 6.90421 7.00309 7.19302 7.55007 7.59258 7.86987 7.90446 7.93965 8.21147 8.86337 9.45723 10.94416 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.016262 B = 0.007813 C = 0.006554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.365797 B = 3583.121222 C = 4271.418282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.090 4.090 3 C -0.137 4.137 4 C 0.063 3.937 5 N -0.477 5.477 6 C 0.205 3.795 7 C -0.512 4.512 8 H 0.069 0.931 9 C 0.060 3.940 10 N -0.894 5.894 11 Si 0.901 3.099 12 H -0.270 1.270 13 H -0.283 1.283 14 H -0.283 1.283 15 C 0.333 3.667 16 N -0.473 5.473 17 C 0.098 3.902 18 C 0.017 3.983 19 N -0.396 5.396 20 C 0.138 3.862 21 C 0.283 3.717 22 N -0.383 5.383 23 H 0.056 0.944 24 H 0.049 0.951 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.039 0.961 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.094 0.906 32 H 0.012 0.988 33 H 0.033 0.967 34 H 0.264 0.736 35 H 0.172 0.828 36 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.979 -4.938 -12.094 14.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.109 4.109 3 C -0.194 4.194 4 C -0.064 4.064 5 N -0.197 5.197 6 C 0.084 3.916 7 C -0.550 4.550 8 H 0.088 0.912 9 C -0.142 4.142 10 N -0.533 5.533 11 Si 0.729 3.271 12 H -0.195 1.195 13 H -0.209 1.209 14 H -0.209 1.209 15 C 0.098 3.902 16 N -0.192 5.192 17 C -0.066 4.066 18 C -0.147 4.147 19 N -0.112 5.112 20 C -0.006 4.006 21 C -0.035 4.035 22 N -0.060 5.060 23 H 0.075 0.925 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.112 0.888 32 H 0.030 0.970 33 H 0.051 0.949 34 H 0.073 0.927 35 H 0.189 0.811 36 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -5.670 -3.114 -11.671 13.344 hybrid contribution -0.510 -0.488 0.789 1.058 sum -6.180 -3.603 -10.883 13.023 Atomic orbital electron populations 1.21759 0.95369 1.01367 1.01424 1.21090 0.94973 0.96922 0.97887 1.21718 1.01878 0.95117 1.00707 1.22228 0.85189 1.00357 0.98653 1.59850 1.12672 1.37323 1.09818 1.19937 0.94842 0.97492 0.79351 1.21045 1.38645 0.98246 0.97074 0.91245 1.24958 0.94896 0.96454 0.97933 1.69957 1.38445 1.26973 1.17901 0.86380 0.77921 0.82659 0.80173 1.19472 1.20929 1.20880 1.21056 0.88897 0.87459 0.92834 1.68803 1.33793 1.00993 1.15603 1.23921 0.95115 0.97174 0.90425 1.23540 0.92651 0.96679 1.01812 1.68198 1.30880 1.00482 1.11628 1.16912 0.93259 0.92901 0.97577 1.24218 0.92732 0.92448 0.94135 1.81134 1.08587 1.09653 1.06580 0.92523 0.93159 0.92911 0.92702 0.91980 0.94143 0.92580 0.92428 0.88817 0.97041 0.94931 0.92682 0.81120 0.80792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.19 37.16 0.34 -1.44 16 2 C -0.09 -1.37 2.94 -90.62 -0.27 -1.64 16 3 C -0.14 -2.16 9.03 37.16 0.34 -1.83 16 4 C 0.06 1.14 3.97 -3.82 -0.02 1.12 16 5 N -0.48 -9.79 3.34 -174.21 -0.58 -10.37 16 6 C 0.21 5.09 4.58 -4.98 -0.02 5.07 16 7 C -0.51 -13.75 8.41 -34.44 -0.29 -14.04 16 8 H 0.07 1.85 7.59 -52.49 -0.40 1.45 16 9 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 10 N -0.89 -25.89 13.29 55.43 0.74 -25.15 16 11 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 12 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 15 C 0.33 6.11 4.72 -154.78 -0.73 5.38 16 16 N -0.47 -7.48 8.89 -11.97 -0.11 -7.59 16 17 C 0.10 1.12 11.22 -17.28 -0.19 0.93 16 18 C 0.02 0.19 11.21 -17.40 -0.20 -0.01 16 19 N -0.40 -6.11 10.42 -10.74 -0.11 -6.22 16 20 C 0.14 2.50 6.58 -84.55 -0.56 1.94 16 21 C 0.28 5.74 14.86 -22.47 -0.33 5.41 16 22 N -0.38 -8.32 18.54 41.84 0.78 -7.54 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.86 7.48 -51.93 -0.39 0.47 16 27 H 0.06 1.12 7.90 -51.93 -0.41 0.71 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 1.03 7.04 -51.93 -0.37 0.66 16 31 H 0.09 1.84 7.02 -51.93 -0.36 1.48 16 32 H 0.01 0.31 8.05 -51.93 -0.42 -0.11 16 33 H 0.03 0.89 7.84 -51.93 -0.41 0.48 16 34 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 35 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 36 H 0.18 1.18 8.06 -52.48 -0.42 0.75 16 LS Contribution 315.55 15.07 4.76 4.76 Total: -1.00 -30.52 315.55 -6.43 -36.95 By element: Atomic # 1 Polarization: 1.18 SS G_CDS: -4.85 Total: -3.66 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -2.02 Total: 2.45 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: 0.71 Total: -56.87 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.52 -6.43 -36.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054376805.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.696 kcal (2) G-P(sol) polarization free energy of solvation -30.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds