Wall clock time and date at job start Mon Mar 30 2020 05:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47113 * 2 1 4 4 C 1.53006 * 109.47283 * 119.99686 * 2 1 3 5 5 N 1.46893 * 109.47051 * 174.47997 * 4 2 1 6 6 C 1.46899 * 110.99880 * 163.07547 * 5 4 2 7 7 C 1.50700 * 109.47620 * 287.84549 * 6 5 4 8 8 H 1.07998 * 119.99333 * 2.55483 * 7 6 5 9 9 C 1.37871 * 120.00369 * 182.55474 * 7 6 5 10 10 N 1.31514 * 119.99862 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00108 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47296 * 359.97438 * 11 9 7 13 13 H 1.48491 * 109.47293 * 119.99969 * 11 9 7 14 14 H 1.48509 * 109.47050 * 240.00007 * 11 9 7 15 15 C 1.38406 * 111.00513 * 287.03323 * 5 4 2 16 16 N 1.32731 * 120.16972 * 328.99169 * 15 5 4 17 17 C 1.32113 * 120.00009 * 180.02562 * 16 15 5 18 18 C 1.38644 * 120.35195 * 359.97438 * 17 16 15 19 19 N 1.31837 * 120.35627 * 359.97438 * 18 17 16 20 20 C 1.33045 * 119.98562 * 0.02698 * 19 18 17 21 21 C 1.43202 * 120.17160 * 179.97438 * 20 19 18 22 22 N 4.69331 * 131.70150 * 359.91791 * 3 1 2 23 23 H 1.08994 * 109.47132 * 300.00290 * 1 2 3 24 24 H 1.09000 * 109.47251 * 60.00347 * 1 2 3 25 25 H 1.08998 * 109.46933 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47456 * 239.99621 * 2 1 3 27 27 H 1.09002 * 109.47111 * 184.82544 * 3 2 1 28 28 H 1.09006 * 109.46975 * 304.81962 * 3 2 1 29 29 H 1.08997 * 109.47388 * 64.82778 * 3 2 1 30 30 H 1.08993 * 109.46728 * 54.48430 * 4 2 1 31 31 H 1.09000 * 109.46821 * 294.48093 * 4 2 1 32 32 H 1.08995 * 109.47127 * 47.84807 * 6 5 4 33 33 H 1.09002 * 109.47050 * 167.84308 * 6 5 4 34 34 H 0.97009 * 120.00039 * 179.97438 * 10 9 7 35 35 H 1.08000 * 119.82556 * 180.27739 * 17 16 15 36 36 H 1.08008 * 119.82620 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5029 -0.8376 1.1845 6 6 4.0653 -1.1480 2.5056 7 6 3.9740 0.0694 3.3892 8 1 3.5042 0.9695 3.0212 9 6 4.4901 0.0341 4.6671 10 7 5.0627 -1.0619 5.1150 11 14 4.3762 1.5429 5.7625 12 1 3.6921 2.6373 5.0281 13 1 3.6041 1.2090 6.9862 14 1 5.7427 1.9820 6.1439 15 6 3.8844 -1.7831 0.2485 16 7 3.1082 -2.8320 0.0054 17 6 3.4759 -3.7328 -0.8885 18 6 4.6706 -3.5893 -1.5771 19 7 5.4517 -2.5524 -1.3474 20 6 5.0950 -1.6370 -0.4502 21 6 5.9406 -0.5094 -0.1972 22 7 6.6124 0.3841 0.0050 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 3.1266 1.4437 -0.0864 28 1 1.6078 1.9807 -0.8437 29 1 1.7490 1.9308 0.9300 30 1 1.5983 -1.7163 1.3001 31 1 1.7596 -0.1534 2.1365 32 1 3.5044 -1.9667 2.9561 33 1 5.1098 -1.4401 2.3964 34 1 5.4262 -1.0867 6.0140 35 1 2.8401 -4.5828 -1.0873 36 1 4.9627 -4.3306 -2.3064 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054376805.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:03 Heat of formation + Delta-G solvation = 62.853905 kcal Electronic energy + Delta-G solvation = -19562.416835 eV Core-core repulsion = 16660.384554 eV Total energy + Delta-G solvation = -2902.032281 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.133 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.39153 -39.14672 -37.67682 -35.86652 -35.25561 -34.47674 -31.91223 -29.21081 -27.94635 -27.13627 -26.37997 -25.11125 -22.86643 -21.03380 -20.67375 -19.02363 -18.66379 -17.66299 -17.01368 -16.28440 -16.02929 -15.87378 -15.30925 -15.16930 -14.78645 -14.38223 -14.25800 -14.04592 -13.90511 -13.77927 -13.42724 -13.07359 -12.93007 -12.87464 -12.77909 -12.48587 -12.31735 -12.15595 -11.87037 -11.66743 -11.57664 -11.43613 -10.71247 -10.54782 -10.23020 -9.26534 -8.29286 -6.38639 -0.65943 0.01372 1.35836 1.38084 1.50356 1.52467 1.83292 2.27624 2.37343 2.69155 2.81479 3.05559 3.25956 3.52843 3.79214 3.99628 4.09277 4.21500 4.32292 4.42989 4.65806 4.75699 4.80504 4.85818 4.95285 5.02331 5.10396 5.13754 5.23372 5.26303 5.46684 5.51153 5.57962 5.85935 5.92332 6.10180 6.40300 6.42908 6.67690 6.73539 7.30371 8.82230 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.016262 B = 0.007813 C = 0.006554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.365797 B = 3583.121222 C = 4271.418282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.080 4.080 3 C -0.132 4.132 4 C 0.068 3.932 5 N -0.488 5.488 6 C 0.229 3.771 7 C -0.520 4.520 8 H 0.065 0.935 9 C 0.008 3.992 10 N -0.929 5.929 11 Si 0.965 3.035 12 H -0.264 1.264 13 H -0.272 1.272 14 H -0.283 1.283 15 C 0.310 3.690 16 N -0.488 5.488 17 C 0.118 3.882 18 C 0.047 3.953 19 N -0.411 5.411 20 C 0.106 3.894 21 C 0.293 3.707 22 N -0.430 5.430 23 H 0.055 0.945 24 H 0.070 0.930 25 H 0.061 0.939 26 H 0.055 0.945 27 H 0.031 0.969 28 H 0.065 0.935 29 H 0.046 0.954 30 H 0.058 0.942 31 H 0.069 0.931 32 H -0.015 1.015 33 H -0.002 1.002 34 H 0.266 0.734 35 H 0.229 0.771 36 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.732 -6.457 -14.070 17.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.099 4.099 3 C -0.190 4.190 4 C -0.058 4.058 5 N -0.208 5.208 6 C 0.106 3.894 7 C -0.558 4.558 8 H 0.083 0.917 9 C -0.191 4.191 10 N -0.569 5.569 11 Si 0.789 3.211 12 H -0.188 1.188 13 H -0.197 1.197 14 H -0.209 1.209 15 C 0.078 3.922 16 N -0.207 5.207 17 C -0.048 4.048 18 C -0.119 4.119 19 N -0.127 5.127 20 C -0.034 4.034 21 C -0.024 4.024 22 N -0.107 5.107 23 H 0.074 0.926 24 H 0.089 0.911 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.050 0.950 28 H 0.084 0.916 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.003 0.997 33 H 0.016 0.984 34 H 0.075 0.925 35 H 0.246 0.754 36 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -7.422 -4.579 -13.648 16.196 hybrid contribution -0.010 -0.304 1.207 1.245 sum -7.432 -4.884 -12.440 15.292 Atomic orbital electron populations 1.21709 0.92792 1.02327 1.02383 1.21018 0.96897 0.95838 0.96141 1.21665 1.00048 0.95978 1.01285 1.22203 0.84022 1.00353 0.99249 1.59620 1.13764 1.39407 1.08021 1.19363 0.92557 0.95692 0.81775 1.21322 1.38115 0.98723 0.97671 0.91651 1.25820 0.94571 0.99285 0.99426 1.70068 1.39499 1.28939 1.18401 0.85393 0.77856 0.79248 0.78556 1.18758 1.19689 1.20943 1.20803 0.89826 0.88522 0.93086 1.68801 1.33579 1.01127 1.17146 1.24957 0.95489 0.96747 0.87575 1.24627 0.91242 0.95300 1.00705 1.68267 1.32085 1.01215 1.11181 1.16808 0.93258 0.93615 0.99746 1.24821 0.92156 0.92541 0.92910 1.81093 1.10218 1.11110 1.08295 0.92610 0.91143 0.91970 0.92665 0.94954 0.91619 0.93483 0.92339 0.91238 0.99675 0.98419 0.92519 0.75432 0.75041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 9.19 71.98 0.66 -2.44 16 2 C -0.08 -2.39 2.94 -10.79 -0.03 -2.43 16 3 C -0.13 -4.20 9.03 71.98 0.65 -3.55 16 4 C 0.07 2.54 3.97 86.31 0.34 2.88 16 5 N -0.49 -20.89 3.34 -705.07 -2.36 -23.25 16 6 C 0.23 12.07 4.58 85.56 0.39 12.46 16 7 C -0.52 -29.27 8.41 25.60 0.22 -29.05 16 8 H 0.07 3.65 7.59 -2.91 -0.02 3.62 16 9 C 0.01 0.45 5.46 84.65 0.46 0.91 16 10 N -0.93 -55.70 13.29 21.45 0.28 -55.42 16 11 Si 0.96 44.90 29.54 68.60 2.03 46.93 16 12 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 13 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 14 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 15 C 0.31 11.48 4.72 133.51 0.63 12.11 16 16 N -0.49 -14.47 8.89 -191.80 -1.70 -16.17 16 17 C 0.12 2.13 11.22 84.75 0.95 3.08 16 18 C 0.05 0.83 11.21 84.79 0.95 1.78 16 19 N -0.41 -11.87 10.42 -187.88 -1.96 -13.82 16 20 C 0.11 3.87 6.58 40.77 0.27 4.14 16 21 C 0.29 12.51 14.86 88.33 1.31 13.82 16 22 N -0.43 -19.81 18.54 19.00 0.35 -19.46 16 23 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.05 1.66 7.48 -2.39 -0.02 1.64 16 27 H 0.03 1.19 7.90 -2.39 -0.02 1.18 16 28 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 29 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.06 2.11 7.04 -2.39 -0.02 2.09 16 31 H 0.07 2.86 7.02 -2.39 -0.02 2.84 16 32 H -0.01 -0.82 8.05 -2.39 -0.02 -0.83 16 33 H 0.00 -0.14 7.84 -2.39 -0.02 -0.15 16 34 H 0.27 15.00 8.31 -92.70 -0.77 14.23 16 35 H 0.23 1.49 8.06 -2.91 -0.02 1.47 16 36 H 0.23 1.39 8.06 -2.91 -0.02 1.36 16 Total: -1.00 -72.37 315.55 4.52 -67.84 By element: Atomic # 1 Polarization: -1.44 SS G_CDS: 1.08 Total: -0.37 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: 6.80 Total: 13.72 kcal Atomic # 7 Polarization: -122.74 SS G_CDS: -5.38 Total: -128.13 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -72.37 4.52 -67.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054376805.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.698 kcal (2) G-P(sol) polarization free energy of solvation -72.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds