Wall clock time and date at job start Mon Mar 30 2020 05:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31893 * 119.91025 * 2 1 4 4 N 1.28271 * 122.67555 * 179.70924 * 3 2 1 5 5 C 1.32591 * 122.19690 * 0.59261 * 4 3 2 6 6 N 1.38455 * 120.27861 * 179.72394 * 5 4 3 7 7 C 1.46900 * 111.00132 * 67.77913 * 6 5 4 8 8 C 1.46897 * 111.00082 * 303.82217 * 6 5 4 9 9 H 1.09005 * 109.47213 * 64.54346 * 8 6 5 10 10 C 1.52992 * 109.47551 * 304.54160 * 8 6 5 11 11 C 1.50703 * 109.47459 * 184.53887 * 8 6 5 12 12 H 1.08006 * 119.99815 * 5.21009 * 11 8 6 13 13 C 1.37872 * 120.00476 * 185.20470 * 11 8 6 14 14 N 1.31518 * 120.00123 * 197.45995 * 13 11 8 15 15 Si 1.86802 * 119.99868 * 17.46118 * 13 11 8 16 16 H 1.48499 * 109.46951 * 179.97438 * 15 13 11 17 17 H 1.48492 * 109.47019 * 299.99875 * 15 13 11 18 18 H 1.48497 * 109.47094 * 59.99876 * 15 13 11 19 19 C 1.40766 * 119.43931 * 359.45047 * 5 4 3 20 20 C 1.43193 * 121.19564 * 180.23178 * 19 5 4 21 21 N 4.80792 * 136.66456 * 180.02562 * 2 1 3 22 22 C 1.38453 * 119.90502 * 180.02562 * 2 1 3 23 23 C 1.50702 * 121.05495 * 359.97438 * 22 2 1 24 24 H 1.08995 * 109.47348 * 269.98003 * 1 2 3 25 25 H 1.08998 * 109.46840 * 29.97769 * 1 2 3 26 26 H 1.09001 * 109.47446 * 149.97359 * 1 2 3 27 27 H 1.08999 * 109.47374 * 297.86451 * 7 6 5 28 28 H 1.08995 * 109.47406 * 57.86663 * 7 6 5 29 29 H 1.09006 * 109.47402 * 177.86757 * 7 6 5 30 30 H 1.08997 * 109.47174 * 306.80505 * 10 8 6 31 31 H 1.09010 * 109.46833 * 66.79916 * 10 8 6 32 32 H 1.08998 * 109.47702 * 186.79843 * 10 8 6 33 33 H 0.96990 * 119.99868 * 354.93697 * 14 13 11 34 34 H 1.08999 * 109.46754 * 270.02157 * 23 22 2 35 35 H 1.08999 * 109.47336 * 30.01748 * 23 22 2 36 36 H 1.09002 * 109.47182 * 150.02518 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1646 1.1433 0.0000 4 7 3.4458 1.2051 0.0055 5 6 4.2057 0.1186 0.0000 6 7 5.5856 0.2317 0.0005 7 6 6.0680 0.7852 1.2728 8 6 6.0479 1.0412 -1.1348 9 1 5.6811 2.0619 -1.0265 10 6 5.5147 0.4433 -2.4382 11 6 7.5546 1.0496 -1.1654 12 1 8.1122 0.4409 -0.4689 13 6 8.2212 1.8341 -2.0824 14 7 9.4871 1.5997 -2.3515 15 14 7.3264 3.2300 -2.9428 16 1 8.2583 3.9162 -3.8734 17 1 6.1760 2.6841 -3.7068 18 1 6.8338 4.1998 -1.9319 19 6 3.5975 -1.1510 -0.0006 20 6 4.3818 -2.3490 -0.0015 21 7 5.0040 -3.2995 -0.0015 22 6 2.1972 -1.2002 -0.0005 23 6 1.4657 -2.5177 -0.0005 24 1 -0.3634 -0.0004 1.0276 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3634 -0.8897 -0.5142 27 1 5.6664 1.7895 1.4077 28 1 5.7386 0.1488 2.0941 29 1 7.1572 0.8280 1.2608 30 1 5.7800 -0.6126 -2.4889 31 1 4.4300 0.5472 -2.4686 32 1 5.9539 0.9694 -3.2858 33 1 9.9717 0.9238 -1.8526 34 1 1.2894 -2.8354 1.0271 35 1 0.5112 -2.4034 -0.5142 36 1 2.0674 -3.2674 -0.5144 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063093629.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:31 Heat of formation + Delta-G solvation = 75.689991 kcal Electronic energy + Delta-G solvation = -19593.629830 eV Core-core repulsion = 16692.154164 eV Total energy + Delta-G solvation = -2901.475667 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.133 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.57583 -39.22830 -38.02322 -35.88468 -35.16857 -33.62517 -31.98735 -29.86105 -29.07451 -26.97469 -26.19969 -25.52414 -23.57374 -21.57214 -20.16880 -19.55993 -18.88465 -17.60962 -17.11790 -16.20047 -15.56245 -15.35405 -15.22115 -14.84941 -14.76730 -14.47286 -14.28142 -14.17346 -14.00245 -13.93304 -13.71805 -13.63583 -13.38386 -13.15464 -12.69188 -12.55737 -12.48748 -12.16539 -11.95928 -11.66311 -11.22683 -11.03773 -10.88381 -10.49913 -10.45468 -9.53149 -8.80346 -6.39581 -0.86226 -0.32162 1.41497 1.42267 1.48948 1.67852 1.72794 2.41944 2.42786 2.46020 2.50718 2.97591 3.03133 3.31429 3.59902 3.66651 4.03697 4.21448 4.34369 4.38400 4.50624 4.55085 4.60467 4.62546 4.71592 4.76399 4.88636 4.90896 4.96450 5.01712 5.13364 5.26737 5.43920 5.66905 5.77370 6.01925 6.21975 6.34311 6.60403 7.35709 7.55316 8.60748 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.024518 B = 0.006887 C = 0.006061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.741171 B = 4064.500413 C = 4618.870696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.063 3.937 3 N -0.236 5.236 4 N -0.296 5.296 5 C 0.284 3.716 6 N -0.498 5.498 7 C 0.048 3.952 8 C 0.201 3.799 9 H 0.010 0.990 10 C -0.138 4.138 11 C -0.589 4.589 12 H 0.031 0.969 13 C -0.011 4.011 14 N -0.932 5.932 15 Si 1.074 2.926 16 H -0.283 1.283 17 H -0.249 1.249 18 H -0.266 1.266 19 C -0.034 4.034 20 C 0.289 3.711 21 N -0.426 5.426 22 C -0.007 4.007 23 C -0.124 4.124 24 H 0.107 0.893 25 H 0.085 0.915 26 H 0.115 0.885 27 H 0.037 0.963 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.040 0.960 31 H 0.035 0.965 32 H 0.059 0.941 33 H 0.254 0.746 34 H 0.115 0.885 35 H 0.128 0.872 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.477 -5.168 5.368 24.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.083 4.083 3 N -0.078 5.078 4 N -0.140 5.140 5 C 0.046 3.954 6 N -0.223 5.223 7 C -0.098 4.098 8 C 0.095 3.905 9 H 0.028 0.972 10 C -0.196 4.196 11 C -0.627 4.627 12 H 0.049 0.951 13 C -0.210 4.210 14 N -0.567 5.567 15 Si 0.896 3.104 16 H -0.209 1.209 17 H -0.174 1.174 18 H -0.191 1.191 19 C -0.049 4.049 20 C -0.027 4.027 21 N -0.102 5.102 22 C -0.021 4.021 23 C -0.180 4.180 24 H 0.126 0.874 25 H 0.104 0.896 26 H 0.134 0.866 27 H 0.055 0.945 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.133 0.867 35 H 0.146 0.854 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -22.154 -4.247 4.176 22.941 hybrid contribution 0.790 -1.527 1.320 2.168 sum -21.364 -5.774 5.496 22.803 Atomic orbital electron populations 1.20975 0.82979 1.05987 1.05641 1.23458 1.01364 0.87835 0.95692 1.72618 1.00881 1.26628 1.07662 1.73426 1.00309 1.27509 1.12714 1.21680 0.92318 0.89545 0.91871 1.60047 1.02602 1.53719 1.05929 1.22197 1.01556 0.97767 0.88288 1.19485 0.94604 0.90275 0.86150 0.97250 1.22121 0.97739 1.00826 0.98905 1.21985 0.90907 1.28407 1.21447 0.95070 1.26938 0.96596 1.01143 0.96365 1.70980 1.12006 1.35287 1.38446 0.83687 0.75498 0.74333 0.76871 1.20906 1.17351 1.19127 1.16993 0.92835 0.87362 1.07690 1.24830 0.92553 0.91745 0.93596 1.81191 1.07831 1.12925 1.08282 1.21598 0.89847 1.00087 0.90616 1.21235 1.01710 0.89158 1.05904 0.87438 0.89587 0.86632 0.94469 0.90846 0.91212 0.94037 0.94616 0.92184 0.93711 0.86652 0.85430 0.91297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.85 9.81 71.23 0.70 -0.16 16 2 C 0.06 1.27 6.86 42.60 0.29 1.56 16 3 N -0.24 -7.00 11.39 -47.74 -0.54 -7.54 16 4 N -0.30 -10.84 10.84 -54.58 -0.59 -11.43 16 5 C 0.28 10.47 3.93 133.59 0.53 11.00 16 6 N -0.50 -21.62 4.06 -705.53 -2.87 -24.48 16 7 C 0.05 1.94 9.21 127.69 1.18 3.12 16 8 C 0.20 9.84 1.43 44.17 0.06 9.90 16 9 H 0.01 0.50 6.60 -2.38 -0.02 0.48 16 10 C -0.14 -6.32 8.49 71.98 0.61 -5.71 16 11 C -0.59 -33.72 8.06 25.60 0.21 -33.52 16 12 H 0.03 1.96 7.18 -2.91 -0.02 1.94 16 13 C -0.01 -0.64 5.29 84.65 0.45 -0.19 16 14 N -0.93 -58.56 13.70 21.45 0.29 -58.27 16 15 Si 1.07 50.90 26.28 68.60 1.80 52.71 16 16 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 17 H -0.25 -10.68 5.74 99.48 0.57 -10.11 16 18 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 19 C -0.03 -1.01 5.79 -20.96 -0.12 -1.13 16 20 C 0.29 9.51 13.64 88.33 1.20 10.72 16 21 N -0.43 -15.44 18.54 19.00 0.35 -15.09 16 22 C -0.01 -0.14 5.96 -19.36 -0.12 -0.26 16 23 C -0.12 -1.27 9.31 71.24 0.66 -0.60 16 24 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.12 0.27 6.04 -2.39 -0.01 0.25 16 27 H 0.04 1.46 8.06 -2.39 -0.02 1.44 16 28 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 29 H 0.07 3.08 6.55 -2.38 -0.02 3.06 16 30 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.03 1.46 7.38 -2.38 -0.02 1.44 16 32 H 0.06 2.79 4.82 -2.39 -0.01 2.78 16 33 H 0.25 16.22 8.73 -92.72 -0.81 15.41 16 34 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.13 0.40 6.06 -2.39 -0.01 0.38 16 36 H 0.07 0.91 7.25 -2.39 -0.02 0.89 16 Total: -1.00 -73.85 301.90 5.03 -68.82 By element: Atomic # 1 Polarization: -0.38 SS G_CDS: 0.93 Total: 0.55 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: 5.65 Total: -5.27 kcal Atomic # 7 Polarization: -113.46 SS G_CDS: -3.35 Total: -116.81 kcal Atomic # 14 Polarization: 50.90 SS G_CDS: 1.80 Total: 52.71 kcal Total: -73.85 5.03 -68.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063093629.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.513 kcal (2) G-P(sol) polarization free energy of solvation -73.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds