Wall clock time and date at job start Mon Mar 30 2020 05:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30358 * 125.89342 * 2 1 4 4 N 1.39904 * 109.20241 * 180.02562 * 3 2 1 5 5 C 1.46498 * 125.76073 * 180.02562 * 4 3 2 6 6 C 1.34934 * 108.47733 * 0.02562 * 4 3 2 7 7 N 1.38186 * 126.44366 * 180.02562 * 6 4 3 8 8 C 1.46898 * 110.99808 * 116.01825 * 7 6 4 9 9 C 1.50697 * 109.47470 * 290.65220 * 8 7 6 10 10 H 1.08010 * 119.99674 * 4.53707 * 9 8 7 11 11 C 1.37874 * 120.00375 * 184.53986 * 9 8 7 12 12 N 1.31516 * 119.99759 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00181 * 179.97438 * 11 9 8 14 14 H 1.48510 * 109.46968 * 60.00238 * 13 11 9 15 15 H 1.48497 * 109.47041 * 180.02562 * 13 11 9 16 16 H 1.48491 * 109.47491 * 300.00212 * 13 11 9 17 17 C 1.46899 * 110.99595 * 239.97139 * 7 6 4 18 18 C 1.53001 * 117.49586 * 244.70325 * 17 7 6 19 19 C 1.53008 * 117.49378 * 176.04597 * 17 7 6 20 20 C 1.39228 * 107.11690 * 359.97438 * 6 4 3 21 21 C 1.43191 * 126.50206 * 179.73813 * 20 6 4 22 22 N 3.59367 * 90.84135 * 180.16236 * 2 1 3 23 23 H 1.09001 * 109.47253 * 269.97798 * 1 2 3 24 24 H 1.09006 * 109.47234 * 29.97647 * 1 2 3 25 25 H 1.09003 * 109.47055 * 149.97313 * 1 2 3 26 26 H 1.09002 * 109.46952 * 269.97773 * 5 4 3 27 27 H 1.09002 * 109.47036 * 29.97718 * 5 4 3 28 28 H 1.09003 * 109.47080 * 149.97407 * 5 4 3 29 29 H 1.08999 * 109.47562 * 50.65217 * 8 7 6 30 30 H 1.09007 * 109.47070 * 170.65430 * 8 7 6 31 31 H 0.97007 * 119.99524 * 179.97438 * 12 11 9 32 32 H 1.08997 * 115.55145 * 30.38436 * 17 7 6 33 33 H 1.08995 * 117.50330 * 0.02562 * 18 17 7 34 34 H 1.09008 * 117.49336 * 145.02825 * 18 17 7 35 35 H 1.08991 * 117.49671 * 214.98101 * 19 17 7 36 36 H 1.08998 * 117.49707 * 0.02562 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2712 1.0560 0.0000 4 7 3.6113 0.6542 -0.0006 5 6 4.7728 1.5470 -0.0002 6 6 3.6534 -0.6945 -0.0015 7 7 4.7900 -1.4803 -0.0018 8 6 4.8807 -2.2753 1.2301 9 6 5.1613 -1.3638 2.3968 10 1 5.1896 -0.2939 2.2516 11 6 5.3821 -1.8955 3.6496 12 7 5.3472 -3.1983 3.8265 13 14 5.7306 -0.7656 5.0957 14 1 4.5814 0.1539 5.2937 15 1 5.9316 -1.5786 6.3219 16 1 6.9564 0.0262 4.8210 17 6 4.8330 -2.3433 -1.1898 18 6 4.7538 -3.8551 -0.9679 19 6 6.0775 -3.2111 -1.3879 20 6 2.3362 -1.1455 -0.0009 21 6 1.9032 -2.5104 -0.0068 22 7 1.5597 -3.5933 -0.0102 23 1 -0.3634 -0.0004 1.0277 24 1 -0.3634 0.8902 -0.5135 25 1 -0.3633 -0.8898 -0.5143 26 1 5.0609 1.7688 -1.0279 27 1 4.5185 2.4739 0.5139 28 1 5.6032 1.0626 0.5135 29 1 3.9384 -2.7977 1.3956 30 1 5.6873 -3.0024 1.1348 31 1 5.5029 -3.5723 4.7079 32 1 4.3537 -1.9397 -2.0817 33 1 4.6695 -4.2093 0.0594 34 1 4.2227 -4.4461 -1.7142 35 1 6.4166 -3.3786 -2.4101 36 1 6.8641 -3.1418 -0.6365 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070073434.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:16 Heat of formation + Delta-G solvation = 143.019626 kcal Electronic energy + Delta-G solvation = -19866.703152 eV Core-core repulsion = 16968.147118 eV Total energy + Delta-G solvation = -2898.556035 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.133 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.13453 -38.20565 -35.76255 -34.14014 -33.30341 -32.42865 -29.44917 -28.81627 -27.03470 -25.47711 -23.14204 -21.90879 -21.86499 -20.19369 -18.98077 -17.87433 -16.82245 -15.89781 -15.64640 -15.04565 -14.70842 -14.24278 -13.79563 -13.42448 -13.26599 -12.78780 -12.65047 -12.58791 -12.26159 -12.11483 -12.06077 -11.88452 -11.75053 -11.55996 -11.09471 -11.00179 -10.86823 -10.57119 -10.30387 -10.15559 -9.94412 -9.39370 -8.77128 -8.59958 -8.02739 -7.78958 -6.18376 -4.22272 1.93567 2.49132 2.61867 3.24083 3.29307 3.30582 3.33242 4.04609 4.13508 4.30087 4.48280 4.63337 5.10729 5.14086 5.18829 5.26530 5.33842 5.45169 5.46516 5.51774 5.75146 5.83039 5.87519 5.98405 5.99789 6.05154 6.14623 6.41821 6.61647 6.73290 6.85575 6.98979 7.14773 7.45153 7.80524 7.85335 8.03592 8.19928 8.26963 8.79967 9.42178 10.91856 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.014439 B = 0.009251 C = 0.007774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.742378 B = 3025.919265 C = 3600.951158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.125 3.875 3 N -0.299 5.299 4 N -0.345 5.345 5 C 0.104 3.896 6 C 0.382 3.618 7 N -0.470 5.470 8 C 0.200 3.800 9 C -0.520 4.520 10 H 0.060 0.940 11 C 0.064 3.936 12 N -0.889 5.889 13 Si 0.898 3.102 14 H -0.276 1.276 15 H -0.285 1.285 16 H -0.274 1.274 17 C 0.026 3.974 18 C -0.208 4.208 19 C -0.164 4.164 20 C -0.233 4.233 21 C 0.305 3.695 22 N -0.448 5.448 23 H 0.081 0.919 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.104 0.896 29 H 0.010 0.990 30 H 0.052 0.948 31 H 0.265 0.735 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.363 6.593 -9.406 11.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.044 4.044 3 N -0.121 5.121 4 N -0.122 5.122 5 C -0.037 4.037 6 C 0.152 3.848 7 N -0.191 5.191 8 C 0.078 3.922 9 C -0.558 4.558 10 H 0.078 0.922 11 C -0.139 4.139 12 N -0.527 5.527 13 Si 0.725 3.275 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.200 1.200 17 C -0.083 4.083 18 C -0.247 4.247 19 C -0.202 4.202 20 C -0.252 4.252 21 C -0.009 4.009 22 N -0.126 5.126 23 H 0.100 0.900 24 H 0.095 0.905 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.103 0.897 28 H 0.122 0.878 29 H 0.028 0.972 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.278 6.514 -9.260 11.548 hybrid contribution -0.066 -0.354 1.041 1.101 sum -2.344 6.160 -8.219 10.535 Atomic orbital electron populations 1.20227 0.86479 1.03197 1.03397 1.22075 0.96484 0.88838 0.96966 1.77008 0.85618 1.21900 1.27606 1.48238 1.05656 1.03771 1.54582 1.21932 0.85078 0.93639 1.03057 1.19183 0.89294 0.84874 0.91477 1.58579 1.31708 1.23819 1.05017 1.20082 0.97591 0.92391 0.82186 1.20955 1.49568 0.93168 0.92145 0.92189 1.24910 0.95054 0.95140 0.98807 1.69927 1.48705 1.10509 1.23605 0.86554 0.78913 0.80520 0.81495 1.20143 1.21088 1.19988 1.22449 1.03163 0.89177 0.93474 1.23590 1.00888 0.96271 1.03942 1.23083 0.92130 1.02814 1.02152 1.16237 0.92862 0.87209 1.28867 1.24286 0.93203 0.91311 0.92068 1.81142 1.08513 1.10610 1.12340 0.90038 0.90464 0.90660 0.90985 0.89663 0.87768 0.97223 0.93035 0.92491 0.87221 0.87163 0.89386 0.88882 0.87907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.94 10.26 36.00 0.37 -0.57 16 2 C 0.13 2.14 7.26 -82.01 -0.60 1.55 16 3 N -0.30 -5.26 12.47 33.91 0.42 -4.84 16 4 N -0.34 -6.14 4.00 -66.77 -0.27 -6.41 16 5 C 0.10 1.45 11.37 59.85 0.68 2.13 16 6 C 0.38 7.50 4.87 -153.56 -0.75 6.75 16 7 N -0.47 -9.46 4.56 -166.50 -0.76 -10.22 16 8 C 0.20 4.88 3.23 -4.98 -0.02 4.86 16 9 C -0.52 -13.78 8.82 -34.44 -0.30 -14.08 16 10 H 0.06 1.55 7.07 -52.48 -0.37 1.18 16 11 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 12 N -0.89 -25.55 13.29 55.43 0.74 -24.81 16 13 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 17 C 0.03 0.45 5.17 -67.71 -0.35 0.10 16 18 C -0.21 -3.68 9.07 -26.69 -0.24 -3.92 16 19 C -0.16 -2.57 9.95 -26.69 -0.27 -2.84 16 20 C -0.23 -4.54 5.71 -106.40 -0.61 -5.14 16 21 C 0.31 6.21 12.60 -22.48 -0.28 5.92 16 22 N -0.45 -9.50 18.54 41.84 0.78 -8.72 16 23 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.07 0.89 7.98 -51.93 -0.41 0.48 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.10 1.57 7.48 -51.93 -0.39 1.18 16 29 H 0.01 0.27 5.97 -51.93 -0.31 -0.04 16 30 H 0.05 1.33 5.97 -51.92 -0.31 1.02 16 31 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.11 1.75 8.03 -51.93 -0.42 1.33 16 33 H 0.11 2.32 5.96 -51.93 -0.31 2.01 16 34 H 0.09 1.43 8.14 -51.92 -0.42 1.00 16 35 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.10 1.76 7.54 -51.93 -0.39 1.36 16 LS Contribution 310.65 15.07 4.68 4.68 Total: -1.00 -30.42 310.65 -6.47 -36.89 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -4.58 Total: 1.03 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -2.46 Total: -3.59 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: 0.91 Total: -55.00 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.42 -6.47 -36.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070073434.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.911 kcal (2) G-P(sol) polarization free energy of solvation -30.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds