Wall clock time and date at job start Mon Mar 30 2020 05:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30358 * 125.89342 * 2 1 4 4 N 1.39904 * 109.20241 * 180.02562 * 3 2 1 5 5 C 1.46498 * 125.76073 * 180.02562 * 4 3 2 6 6 C 1.34934 * 108.47733 * 0.02562 * 4 3 2 7 7 N 1.38186 * 126.44366 * 180.02562 * 6 4 3 8 8 C 1.46898 * 110.99808 * 116.01825 * 7 6 4 9 9 C 1.50697 * 109.47470 * 290.65220 * 8 7 6 10 10 H 1.08010 * 119.99674 * 4.53707 * 9 8 7 11 11 C 1.37874 * 120.00375 * 184.53986 * 9 8 7 12 12 N 1.31516 * 119.99759 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00181 * 179.97438 * 11 9 8 14 14 H 1.48510 * 109.46968 * 60.00238 * 13 11 9 15 15 H 1.48497 * 109.47041 * 180.02562 * 13 11 9 16 16 H 1.48491 * 109.47491 * 300.00212 * 13 11 9 17 17 C 1.46899 * 110.99595 * 239.97139 * 7 6 4 18 18 C 1.53001 * 117.49586 * 244.70325 * 17 7 6 19 19 C 1.53008 * 117.49378 * 176.04597 * 17 7 6 20 20 C 1.39228 * 107.11690 * 359.97438 * 6 4 3 21 21 C 1.43191 * 126.50206 * 179.73813 * 20 6 4 22 22 N 3.59367 * 90.84135 * 180.16236 * 2 1 3 23 23 H 1.09001 * 109.47253 * 269.97798 * 1 2 3 24 24 H 1.09006 * 109.47234 * 29.97647 * 1 2 3 25 25 H 1.09003 * 109.47055 * 149.97313 * 1 2 3 26 26 H 1.09002 * 109.46952 * 269.97773 * 5 4 3 27 27 H 1.09002 * 109.47036 * 29.97718 * 5 4 3 28 28 H 1.09003 * 109.47080 * 149.97407 * 5 4 3 29 29 H 1.08999 * 109.47562 * 50.65217 * 8 7 6 30 30 H 1.09007 * 109.47070 * 170.65430 * 8 7 6 31 31 H 0.97007 * 119.99524 * 179.97438 * 12 11 9 32 32 H 1.08997 * 115.55145 * 30.38436 * 17 7 6 33 33 H 1.08995 * 117.50330 * 0.02562 * 18 17 7 34 34 H 1.09008 * 117.49336 * 145.02825 * 18 17 7 35 35 H 1.08991 * 117.49671 * 214.98101 * 19 17 7 36 36 H 1.08998 * 117.49707 * 0.02562 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2712 1.0560 0.0000 4 7 3.6113 0.6542 -0.0006 5 6 4.7728 1.5470 -0.0002 6 6 3.6534 -0.6945 -0.0015 7 7 4.7900 -1.4803 -0.0018 8 6 4.8807 -2.2753 1.2301 9 6 5.1613 -1.3638 2.3968 10 1 5.1896 -0.2939 2.2516 11 6 5.3821 -1.8955 3.6496 12 7 5.3472 -3.1983 3.8265 13 14 5.7306 -0.7656 5.0957 14 1 4.5814 0.1539 5.2937 15 1 5.9316 -1.5786 6.3219 16 1 6.9564 0.0262 4.8210 17 6 4.8330 -2.3433 -1.1898 18 6 4.7538 -3.8551 -0.9679 19 6 6.0775 -3.2111 -1.3879 20 6 2.3362 -1.1455 -0.0009 21 6 1.9032 -2.5104 -0.0068 22 7 1.5597 -3.5933 -0.0102 23 1 -0.3634 -0.0004 1.0277 24 1 -0.3634 0.8902 -0.5135 25 1 -0.3633 -0.8898 -0.5143 26 1 5.0609 1.7688 -1.0279 27 1 4.5185 2.4739 0.5139 28 1 5.6032 1.0626 0.5135 29 1 3.9384 -2.7977 1.3956 30 1 5.6873 -3.0024 1.1348 31 1 5.5029 -3.5723 4.7079 32 1 4.3537 -1.9397 -2.0817 33 1 4.6695 -4.2093 0.0594 34 1 4.2227 -4.4461 -1.7142 35 1 6.4166 -3.3786 -2.4101 36 1 6.8641 -3.1418 -0.6365 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070073434.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:16 Heat of formation + Delta-G solvation = 124.306522 kcal Electronic energy + Delta-G solvation = -19867.514613 eV Core-core repulsion = 16968.147118 eV Total energy + Delta-G solvation = -2899.367496 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.133 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.55478 -39.69454 -37.36311 -35.65897 -34.89064 -34.15897 -30.77706 -30.22133 -28.84630 -26.75448 -25.02724 -23.30837 -23.26930 -21.64343 -20.41580 -19.43822 -18.59114 -17.47797 -17.19757 -16.58398 -16.37381 -15.77984 -15.20696 -14.76208 -14.60723 -14.34278 -14.12480 -14.04477 -13.80246 -13.64103 -13.48203 -13.38297 -13.06819 -12.93391 -12.80005 -12.68853 -12.43912 -12.20597 -12.03405 -11.69089 -11.36664 -11.30082 -10.67008 -10.10572 -9.50183 -9.40493 -8.26873 -6.37500 0.41714 1.12267 1.29015 1.37973 1.39903 1.47348 1.74758 2.33287 2.56360 2.65285 3.04936 3.10679 3.18941 3.74744 3.82755 3.86314 3.96603 4.11004 4.40768 4.50330 4.53095 4.55634 4.73156 4.79039 4.79319 4.86700 4.99299 5.03288 5.03523 5.14359 5.23468 5.43368 5.50308 5.65168 5.85863 6.15330 6.31467 6.63706 6.69564 6.75470 7.31512 8.83637 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.014439 B = 0.009251 C = 0.007774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.742378 B = 3025.919265 C = 3600.951158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.128 3.872 3 N -0.301 5.301 4 N -0.343 5.343 5 C 0.096 3.904 6 C 0.363 3.637 7 N -0.466 5.466 8 C 0.223 3.777 9 C -0.528 4.528 10 H 0.065 0.935 11 C 0.011 3.989 12 N -0.927 5.927 13 Si 0.961 3.039 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.259 1.259 17 C 0.017 3.983 18 C -0.216 4.216 19 C -0.139 4.139 20 C -0.255 4.255 21 C 0.314 3.686 22 N -0.474 5.474 23 H 0.090 0.910 24 H 0.103 0.897 25 H 0.081 0.919 26 H 0.102 0.898 27 H 0.104 0.896 28 H 0.090 0.910 29 H -0.024 1.024 30 H 0.030 0.970 31 H 0.265 0.735 32 H 0.132 0.868 33 H 0.068 0.932 34 H 0.103 0.897 35 H 0.134 0.866 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.354 8.730 -10.341 13.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.041 4.041 3 N -0.122 5.122 4 N -0.121 5.121 5 C -0.044 4.044 6 C 0.132 3.868 7 N -0.187 5.187 8 C 0.099 3.901 9 C -0.566 4.566 10 H 0.083 0.917 11 C -0.189 4.189 12 N -0.567 5.567 13 Si 0.786 3.214 14 H -0.199 1.199 15 H -0.211 1.211 16 H -0.184 1.184 17 C -0.091 4.091 18 C -0.255 4.255 19 C -0.177 4.177 20 C -0.274 4.274 21 C 0.000 4.000 22 N -0.153 5.153 23 H 0.108 0.892 24 H 0.122 0.878 25 H 0.100 0.900 26 H 0.120 0.880 27 H 0.123 0.877 28 H 0.109 0.891 29 H -0.006 1.006 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.149 0.851 33 H 0.087 0.913 34 H 0.121 0.879 35 H 0.152 0.848 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.259 8.686 -10.219 13.600 hybrid contribution -0.081 -0.999 1.282 1.627 sum -2.340 7.687 -8.937 12.018 Atomic orbital electron populations 1.20402 0.83533 1.04852 1.04423 1.22676 0.98259 0.87562 0.95568 1.77011 0.85546 1.21932 1.27758 1.48582 1.06621 1.03402 1.53466 1.22225 0.83515 0.93448 1.05167 1.19268 0.89114 0.85756 0.92706 1.58451 1.32375 1.23599 1.04274 1.19556 0.94864 0.91778 0.83859 1.21323 1.48677 0.93672 0.92961 0.91676 1.25784 0.94957 0.96429 1.01679 1.70067 1.50125 1.12378 1.24128 0.85551 0.79221 0.78628 0.78019 1.19868 1.21061 1.18357 1.22684 1.04756 0.88582 0.93057 1.23412 1.03289 0.96746 1.02092 1.23154 0.90571 1.00212 1.03738 1.16523 0.93619 0.87310 1.29932 1.24513 0.92565 0.91516 0.91386 1.81124 1.09481 1.11228 1.13437 0.89178 0.87824 0.90019 0.87979 0.87720 0.89118 1.00649 0.95227 0.92612 0.85067 0.91295 0.87876 0.84817 0.89580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.70 10.26 71.23 0.73 -0.96 16 2 C 0.13 4.17 7.26 43.56 0.32 4.49 16 3 N -0.30 -9.93 12.47 -46.64 -0.58 -10.51 16 4 N -0.34 -11.65 4.00 -365.15 -1.46 -13.11 16 5 C 0.10 2.45 11.37 127.77 1.45 3.90 16 6 C 0.36 14.03 4.87 132.59 0.65 14.68 16 7 N -0.47 -18.78 4.56 -680.68 -3.11 -21.89 16 8 C 0.22 11.25 3.23 85.56 0.28 11.53 16 9 C -0.53 -28.32 8.82 25.60 0.23 -28.10 16 10 H 0.07 3.35 7.07 -2.91 -0.02 3.33 16 11 C 0.01 0.60 5.46 84.65 0.46 1.06 16 12 N -0.93 -54.77 13.29 21.45 0.28 -54.49 16 13 Si 0.96 43.06 29.54 68.60 2.03 45.09 16 14 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 15 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 16 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 17 C 0.02 0.59 5.17 44.92 0.23 0.82 16 18 C -0.22 -7.76 9.07 30.62 0.28 -7.48 16 19 C -0.14 -4.21 9.95 30.62 0.30 -3.91 16 20 C -0.26 -9.82 5.71 -21.02 -0.12 -9.94 16 21 C 0.31 12.91 12.60 88.33 1.11 14.02 16 22 N -0.47 -20.55 18.54 19.00 0.35 -20.20 16 23 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 24 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 25 H 0.08 1.78 7.98 -2.39 -0.02 1.76 16 26 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.09 2.59 7.48 -2.39 -0.02 2.57 16 29 H -0.02 -1.38 5.97 -2.39 -0.01 -1.39 16 30 H 0.03 1.61 5.97 -2.38 -0.01 1.60 16 31 H 0.27 14.89 8.31 -92.70 -0.77 14.12 16 32 H 0.13 3.93 8.03 -2.39 -0.02 3.91 16 33 H 0.07 3.08 5.96 -2.39 -0.01 3.07 16 34 H 0.10 3.32 8.14 -2.38 -0.02 3.30 16 35 H 0.13 2.98 8.14 -2.39 -0.02 2.96 16 36 H 0.09 2.93 7.54 -2.39 -0.02 2.91 16 Total: -1.00 -66.90 310.65 4.53 -62.37 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: 1.10 Total: 12.61 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: 5.92 Total: 0.12 kcal Atomic # 7 Polarization: -115.68 SS G_CDS: -4.51 Total: -120.19 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -66.90 4.53 -62.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070073434.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.677 kcal (2) G-P(sol) polarization free energy of solvation -66.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds