Wall clock time and date at job start Mon Mar 30 2020 04:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46893 * 111.00137 * 2 1 4 4 H 1.09004 * 110.43663 * 323.90918 * 3 2 1 5 5 C 1.54625 * 110.59707 * 201.29270 * 3 2 1 6 6 C 1.54661 * 101.68591 * 216.25444 * 5 3 2 7 7 N 1.46766 * 105.38019 * 25.76727 * 6 5 3 8 8 C 1.39237 * 124.34899 * 162.85763 * 7 6 5 9 9 C 1.39481 * 119.83486 * 174.01560 * 8 7 6 10 10 C 1.36367 * 120.16847 * 180.02562 * 9 8 7 11 11 C 1.40865 * 119.83108 * 359.97438 * 10 9 8 12 12 C 1.41155 * 120.16736 * 179.97438 * 11 10 9 13 13 H 1.08008 * 119.99839 * 334.92752 * 12 11 10 14 14 C 1.39905 * 120.00387 * 154.65025 * 12 11 10 15 15 N 1.30868 * 119.99666 * 343.66193 * 14 12 11 16 16 Si 1.86800 * 120.00031 * 163.66007 * 14 12 11 17 17 H 1.48501 * 109.46929 * 94.21018 * 16 14 12 18 18 H 1.48500 * 109.47116 * 214.20620 * 16 14 12 19 19 H 1.48499 * 109.47254 * 334.20812 * 16 14 12 20 20 C 1.40867 * 119.67506 * 0.25422 * 11 10 9 21 21 C 1.36382 * 119.82514 * 359.52648 * 20 11 10 22 22 C 1.34416 * 111.29888 * 342.58600 * 7 6 5 23 23 O 1.21283 * 124.93899 * 180.65163 * 22 7 6 24 24 H 1.09002 * 109.46662 * 59.99618 * 1 2 3 25 25 H 1.08999 * 109.47471 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46913 * 300.00495 * 1 2 3 27 27 H 1.00899 * 110.99430 * 236.04402 * 2 1 3 28 28 H 1.09005 * 110.97286 * 334.58515 * 5 3 2 29 29 H 1.08999 * 110.97020 * 98.31174 * 5 3 2 30 30 H 1.09000 * 110.39715 * 266.74260 * 6 5 3 31 31 H 1.09004 * 110.18360 * 144.68021 * 6 5 3 32 32 H 1.07998 * 119.91582 * 359.97438 * 9 8 7 33 33 H 1.08005 * 120.08374 * 179.97438 * 10 9 8 34 34 H 0.97000 * 120.00008 * 180.02562 * 15 14 12 35 35 H 1.07994 * 120.09197 * 179.72951 * 20 11 10 36 36 H 1.07998 * 119.91694 * 180.18391 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3613 2.0225 -0.6017 5 6 3.4495 1.3959 -0.5256 6 6 4.0837 2.4950 0.3585 7 7 3.2851 2.5132 1.5897 8 6 3.6963 3.0987 2.7842 9 6 2.8131 3.1719 3.8613 10 6 3.2085 3.7443 5.0341 11 6 4.5128 4.2620 5.1565 12 6 4.9294 4.8566 6.3670 13 1 4.1989 5.2836 7.0383 14 6 6.2878 4.8876 6.7001 15 7 7.1324 4.1062 6.0765 16 14 6.8961 6.0442 8.0349 17 1 6.9410 5.3228 9.3322 18 1 8.2574 6.5265 7.6894 19 1 5.9734 7.2026 8.1444 20 6 5.3976 4.1888 4.0628 21 6 4.9894 3.6094 2.8976 22 6 2.1034 1.8971 1.4144 23 8 1.2483 1.7794 2.2664 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8306 -0.5262 -0.7814 28 1 3.9373 0.4338 -0.3687 29 1 3.4792 1.6790 -1.5778 30 1 4.0292 3.4625 -0.1407 31 1 5.1201 2.2443 0.5847 32 1 1.8132 2.7749 3.7658 33 1 2.5233 3.8006 5.8671 34 1 8.0742 4.1274 6.3077 35 1 6.3977 4.5875 4.1477 36 1 5.6675 3.5498 2.0592 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071041452.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:39 Heat of formation + Delta-G solvation = -1.277154 kcal Electronic energy + Delta-G solvation = -19046.963970 eV Core-core repulsion = 16109.858007 eV Total energy + Delta-G solvation = -2937.105964 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.46510 -37.47136 -36.14842 -35.40777 -33.52982 -31.20303 -29.58952 -28.56698 -27.11904 -25.26782 -24.00176 -22.36835 -21.37795 -20.14788 -18.88883 -17.36217 -16.84123 -16.65795 -15.40911 -15.12257 -15.10577 -14.22138 -14.10440 -13.87307 -13.50797 -13.04554 -12.84786 -12.68684 -12.46655 -12.09819 -12.01029 -11.75746 -11.47161 -11.32035 -11.10270 -11.04567 -10.92102 -10.61892 -10.11371 -9.55449 -9.40470 -9.04668 -8.83894 -8.32862 -7.55728 -6.87580 -6.70737 -4.25328 2.51923 2.98950 3.07534 3.09714 3.13798 3.37513 3.56740 3.94774 4.15749 4.35957 4.54335 4.65816 4.95569 5.09703 5.26394 5.40448 5.47160 5.61576 5.67213 5.72323 5.92463 5.99107 6.17739 6.48404 6.68188 6.77426 6.83748 7.05834 7.18806 7.21719 7.33700 7.59365 7.64806 7.91777 8.05892 8.19729 8.31721 8.60632 8.77276 8.90647 9.01634 10.20331 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.047177 B = 0.004446 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.372448 B = 6296.288526 C = 6720.892196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.673 5.673 3 C 0.054 3.946 4 H 0.078 0.922 5 C -0.134 4.134 6 C 0.101 3.899 7 N -0.531 5.531 8 C 0.014 3.986 9 C -0.111 4.111 10 C -0.208 4.208 11 C 0.099 3.901 12 C -0.459 4.459 13 H 0.078 0.922 14 C 0.075 3.925 15 N -0.796 5.796 16 Si 0.908 3.092 17 H -0.271 1.271 18 H -0.276 1.276 19 H -0.261 1.261 20 C -0.146 4.146 21 C -0.123 4.123 22 C 0.512 3.488 23 O -0.519 6.519 24 H 0.019 0.981 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.344 0.656 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.127 0.873 33 H 0.096 0.904 34 H 0.280 0.720 35 H 0.122 0.878 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.445 -3.659 -13.321 14.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.305 5.305 3 C -0.059 4.059 4 H 0.095 0.905 5 C -0.172 4.172 6 C -0.022 4.022 7 N -0.255 5.255 8 C -0.077 4.077 9 C -0.131 4.131 10 C -0.228 4.228 11 C 0.096 3.904 12 C -0.488 4.488 13 H 0.096 0.904 14 C -0.142 4.142 15 N -0.422 5.422 16 Si 0.732 3.268 17 H -0.196 1.196 18 H -0.201 1.201 19 H -0.185 1.185 20 C -0.166 4.166 21 C -0.143 4.143 22 C 0.299 3.701 23 O -0.396 6.396 24 H 0.038 0.962 25 H 0.086 0.914 26 H 0.098 0.902 27 H 0.162 0.838 28 H 0.110 0.890 29 H 0.107 0.893 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.144 0.856 33 H 0.114 0.886 34 H 0.091 0.909 35 H 0.140 0.860 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.586 -3.844 -12.155 13.243 hybrid contribution 0.368 0.690 -0.376 0.867 sum -3.218 -3.154 -12.531 13.316 Atomic orbital electron populations 1.22323 0.86834 1.01971 1.01204 1.60097 1.08724 1.11906 1.49753 1.22214 0.96549 0.91463 0.95718 0.90471 1.22855 0.94019 1.00574 0.99721 1.22052 0.96799 0.98721 0.84666 1.45130 1.17032 1.53055 1.10318 1.17265 0.95354 1.09566 0.85498 1.20807 0.99264 1.00564 0.92458 1.20689 0.98183 1.06937 0.96985 1.17675 0.90893 0.89083 0.92705 1.19546 0.92268 1.33119 1.03897 0.90426 1.25904 0.96832 0.94365 0.97144 1.69836 1.04574 1.30259 1.37558 0.86307 0.78597 0.81145 0.80714 1.19591 1.20090 1.18450 1.20899 1.00883 1.03472 0.91362 1.20126 0.93001 1.02851 0.98330 1.20423 0.81819 0.78492 0.89346 1.90536 1.43102 1.58222 1.47703 0.96208 0.91377 0.90194 0.83753 0.88983 0.89349 0.90905 0.89790 0.85552 0.88564 0.90947 0.86004 0.89086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.50 60.07 0.63 0.93 16 2 N -0.67 -8.26 6.66 -114.02 -0.76 -9.01 16 3 C 0.05 0.71 3.23 -67.73 -0.22 0.49 16 4 H 0.08 0.91 7.87 -51.93 -0.41 0.50 16 5 C -0.13 -1.36 6.63 -25.00 -0.17 -1.53 16 6 C 0.10 1.37 6.50 -3.02 -0.02 1.35 16 7 N -0.53 -10.20 3.12 -112.00 -0.35 -10.55 16 8 C 0.01 0.33 6.61 -83.57 -0.55 -0.22 16 9 C -0.11 -2.80 9.21 -39.79 -0.37 -3.17 16 10 C -0.21 -5.43 9.74 -39.26 -0.38 -5.81 16 11 C 0.10 2.70 5.57 -106.80 -0.59 2.11 16 12 C -0.46 -12.33 9.04 -37.85 -0.34 -12.67 16 13 H 0.08 2.01 7.90 -52.48 -0.41 1.60 16 14 C 0.07 1.88 5.16 -17.34 -0.09 1.79 16 15 N -0.80 -20.60 10.93 55.55 0.61 -19.99 16 16 Si 0.91 18.72 29.59 -169.99 -5.03 13.69 16 17 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 18 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 19 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 20 C -0.15 -3.80 8.63 -39.26 -0.34 -4.13 16 21 C -0.12 -2.86 9.34 -39.79 -0.37 -3.23 16 22 C 0.51 9.74 7.53 -10.86 -0.08 9.66 16 23 O -0.52 -11.69 13.69 5.55 0.08 -11.61 16 24 H 0.02 0.19 8.08 -51.93 -0.42 -0.23 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.08 1.14 7.12 -51.93 -0.37 0.77 16 27 H 0.34 3.11 8.55 -39.29 -0.34 2.78 16 28 H 0.09 0.91 8.09 -51.93 -0.42 0.49 16 29 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.08 1.10 7.19 -51.93 -0.37 0.73 16 32 H 0.13 3.21 5.20 -52.49 -0.27 2.94 16 33 H 0.10 2.39 8.06 -52.48 -0.42 1.96 16 34 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 35 H 0.12 3.22 6.18 -52.49 -0.32 2.89 16 36 H 0.09 1.83 6.70 -52.49 -0.35 1.48 16 LS Contribution 296.67 15.07 4.47 4.47 Total: -1.00 -31.27 296.67 -8.39 -39.67 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -4.52 Total: 7.79 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: -2.89 Total: -14.45 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: -0.50 Total: -39.55 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.08 Total: -11.61 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.27 -8.39 -39.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071041452.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.390 kcal (2) G-P(sol) polarization free energy of solvation -31.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds