Wall clock time and date at job start Mon Mar 30 2020 04:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46893 * 111.00137 * 2 1 4 4 H 1.09004 * 110.43663 * 323.90918 * 3 2 1 5 5 C 1.54625 * 110.59707 * 201.29270 * 3 2 1 6 6 C 1.54661 * 101.68591 * 216.25444 * 5 3 2 7 7 N 1.46766 * 105.38019 * 25.76727 * 6 5 3 8 8 C 1.39237 * 124.34899 * 162.85763 * 7 6 5 9 9 C 1.39481 * 119.83486 * 174.01560 * 8 7 6 10 10 C 1.36367 * 120.16847 * 180.02562 * 9 8 7 11 11 C 1.40865 * 119.83108 * 359.97438 * 10 9 8 12 12 C 1.41155 * 120.16736 * 179.97438 * 11 10 9 13 13 H 1.08008 * 119.99839 * 334.92752 * 12 11 10 14 14 C 1.39905 * 120.00387 * 154.65025 * 12 11 10 15 15 N 1.30868 * 119.99666 * 343.66193 * 14 12 11 16 16 Si 1.86800 * 120.00031 * 163.66007 * 14 12 11 17 17 H 1.48501 * 109.46929 * 94.21018 * 16 14 12 18 18 H 1.48500 * 109.47116 * 214.20620 * 16 14 12 19 19 H 1.48499 * 109.47254 * 334.20812 * 16 14 12 20 20 C 1.40867 * 119.67506 * 0.25422 * 11 10 9 21 21 C 1.36382 * 119.82514 * 359.52648 * 20 11 10 22 22 C 1.34416 * 111.29888 * 342.58600 * 7 6 5 23 23 O 1.21283 * 124.93899 * 180.65163 * 22 7 6 24 24 H 1.09002 * 109.46662 * 59.99618 * 1 2 3 25 25 H 1.08999 * 109.47471 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46913 * 300.00495 * 1 2 3 27 27 H 1.00899 * 110.99430 * 236.04402 * 2 1 3 28 28 H 1.09005 * 110.97286 * 334.58515 * 5 3 2 29 29 H 1.08999 * 110.97020 * 98.31174 * 5 3 2 30 30 H 1.09000 * 110.39715 * 266.74260 * 6 5 3 31 31 H 1.09004 * 110.18360 * 144.68021 * 6 5 3 32 32 H 1.07998 * 119.91582 * 359.97438 * 9 8 7 33 33 H 1.08005 * 120.08374 * 179.97438 * 10 9 8 34 34 H 0.97000 * 120.00008 * 180.02562 * 15 14 12 35 35 H 1.07994 * 120.09197 * 179.72951 * 20 11 10 36 36 H 1.07998 * 119.91694 * 180.18391 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3613 2.0225 -0.6017 5 6 3.4495 1.3959 -0.5256 6 6 4.0837 2.4950 0.3585 7 7 3.2851 2.5132 1.5897 8 6 3.6963 3.0987 2.7842 9 6 2.8131 3.1719 3.8613 10 6 3.2085 3.7443 5.0341 11 6 4.5128 4.2620 5.1565 12 6 4.9294 4.8566 6.3670 13 1 4.1989 5.2836 7.0383 14 6 6.2878 4.8876 6.7001 15 7 7.1324 4.1062 6.0765 16 14 6.8961 6.0442 8.0349 17 1 6.9410 5.3228 9.3322 18 1 8.2574 6.5265 7.6894 19 1 5.9734 7.2026 8.1444 20 6 5.3976 4.1888 4.0628 21 6 4.9894 3.6094 2.8976 22 6 2.1034 1.8971 1.4144 23 8 1.2483 1.7794 2.2664 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8306 -0.5262 -0.7814 28 1 3.9373 0.4338 -0.3687 29 1 3.4792 1.6790 -1.5778 30 1 4.0292 3.4625 -0.1407 31 1 5.1201 2.2443 0.5847 32 1 1.8132 2.7749 3.7658 33 1 2.5233 3.8006 5.8671 34 1 8.0742 4.1274 6.3077 35 1 6.3977 4.5875 4.1477 36 1 5.6675 3.5498 2.0592 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071041452.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:38 Heat of formation + Delta-G solvation = -22.569331 kcal Electronic energy + Delta-G solvation = -19047.887269 eV Core-core repulsion = 16109.858007 eV Total energy + Delta-G solvation = -2938.029262 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.85718 -39.27724 -37.55480 -36.71506 -35.30012 -32.64089 -31.51565 -30.26416 -28.24388 -26.97374 -25.16187 -23.72477 -23.14484 -21.74714 -20.40766 -19.30744 -18.36194 -17.81177 -17.07711 -16.66486 -16.16043 -15.76688 -15.50043 -15.23448 -14.84706 -14.57640 -14.54042 -14.19387 -13.86940 -13.67512 -13.34469 -13.23653 -12.97109 -12.78154 -12.71266 -12.45277 -12.31887 -11.97741 -11.83870 -11.43148 -11.18516 -10.59146 -10.53562 -9.54099 -9.41422 -8.75906 -8.57812 -6.25461 0.74889 1.07848 1.38852 1.41744 1.54097 1.79432 2.14764 2.22761 2.74303 3.23049 3.30712 3.56082 3.71149 4.05689 4.15967 4.31510 4.37126 4.53643 4.56900 4.61238 4.66900 4.87712 4.92464 4.97543 5.07835 5.08864 5.12641 5.29487 5.46356 5.63650 5.76560 5.85206 6.01116 6.10108 6.36889 6.46559 6.55078 6.62870 6.91930 6.96266 7.31285 8.33770 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.047177 B = 0.004446 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.372448 B = 6296.288526 C = 6720.892196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.688 5.688 3 C 0.066 3.934 4 H 0.099 0.901 5 C -0.112 4.112 6 C 0.088 3.912 7 N -0.544 5.544 8 C 0.025 3.975 9 C -0.131 4.131 10 C -0.227 4.227 11 C 0.068 3.932 12 C -0.498 4.498 13 H 0.072 0.928 14 C 0.037 3.963 15 N -0.825 5.825 16 Si 0.984 3.016 17 H -0.265 1.265 18 H -0.261 1.261 19 H -0.261 1.261 20 C -0.161 4.161 21 C -0.118 4.118 22 C 0.493 3.507 23 O -0.566 6.566 24 H 0.043 0.957 25 H 0.083 0.917 26 H 0.042 0.958 27 H 0.367 0.633 28 H 0.099 0.901 29 H 0.137 0.863 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.119 0.881 33 H 0.093 0.907 34 H 0.290 0.710 35 H 0.114 0.886 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.319 -4.005 -16.021 16.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.324 5.324 3 C -0.048 4.048 4 H 0.116 0.884 5 C -0.150 4.150 6 C -0.034 4.034 7 N -0.267 5.267 8 C -0.067 4.067 9 C -0.151 4.151 10 C -0.247 4.247 11 C 0.066 3.934 12 C -0.528 4.528 13 H 0.090 0.910 14 C -0.178 4.178 15 N -0.451 5.451 16 Si 0.805 3.195 17 H -0.189 1.189 18 H -0.185 1.185 19 H -0.185 1.185 20 C -0.181 4.181 21 C -0.139 4.139 22 C 0.282 3.718 23 O -0.446 6.446 24 H 0.061 0.939 25 H 0.102 0.898 26 H 0.061 0.939 27 H 0.189 0.811 28 H 0.117 0.883 29 H 0.155 0.845 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.137 0.863 33 H 0.111 0.889 34 H 0.100 0.900 35 H 0.132 0.868 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.452 -4.222 -14.925 15.703 hybrid contribution -0.072 0.691 0.356 0.781 sum -2.524 -3.531 -14.569 15.202 Atomic orbital electron populations 1.22264 0.86559 1.02824 1.00432 1.59933 1.09270 1.11777 1.51376 1.22140 0.99196 0.92075 0.91368 0.88395 1.22917 0.90893 0.99782 1.01415 1.22518 0.96610 1.01365 0.82873 1.45451 1.18254 1.52469 1.10575 1.17387 0.94826 1.07754 0.86753 1.20904 0.99627 1.01274 0.93291 1.20794 0.98356 1.07925 0.97617 1.17988 0.91526 0.90161 0.93739 1.19766 0.93605 1.34991 1.04423 0.90979 1.26732 0.96175 0.95414 0.99485 1.69865 1.05267 1.31059 1.38934 0.85168 0.78324 0.78549 0.77488 1.18943 1.18525 1.18456 1.20933 1.00473 1.04543 0.92163 1.20386 0.93456 1.01492 0.98524 1.21761 0.80873 0.77542 0.91619 1.90500 1.44579 1.59491 1.49997 0.93878 0.89793 0.93935 0.81142 0.88269 0.84483 0.88773 0.89226 0.86308 0.88921 0.89953 0.86772 0.85414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.50 127.69 1.34 1.93 16 2 N -0.69 -14.88 6.66 -514.66 -3.43 -18.31 16 3 C 0.07 1.51 3.23 44.91 0.15 1.65 16 4 H 0.10 1.90 7.87 -2.38 -0.02 1.88 16 5 C -0.11 -1.72 6.63 31.71 0.21 -1.51 16 6 C 0.09 2.05 6.50 86.89 0.56 2.62 16 7 N -0.54 -20.19 3.12 -626.86 -1.95 -22.14 16 8 C 0.03 1.19 6.61 38.57 0.25 1.45 16 9 C -0.13 -6.90 9.21 22.13 0.20 -6.70 16 10 C -0.23 -12.57 9.74 22.48 0.22 -12.35 16 11 C 0.07 3.90 5.57 -21.28 -0.12 3.78 16 12 C -0.50 -27.96 9.04 23.39 0.21 -27.75 16 13 H 0.07 3.94 7.90 -2.91 -0.02 3.92 16 14 C 0.04 1.87 5.16 85.24 0.44 2.31 16 15 N -0.83 -43.22 10.93 21.82 0.24 -42.98 16 16 Si 0.98 38.65 29.59 68.60 2.03 40.68 16 17 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 18 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 19 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 20 C -0.16 -8.56 8.63 22.48 0.19 -8.37 16 21 C -0.12 -5.47 9.34 22.14 0.21 -5.27 16 22 C 0.49 18.38 7.53 87.90 0.66 19.04 16 23 O -0.57 -26.27 13.69 -3.04 -0.04 -26.31 16 24 H 0.04 0.69 8.08 -2.39 -0.02 0.67 16 25 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.04 1.21 7.12 -2.39 -0.02 1.19 16 27 H 0.37 5.09 8.55 -89.69 -0.77 4.32 16 28 H 0.10 1.44 8.09 -2.38 -0.02 1.42 16 29 H 0.14 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.09 2.01 7.19 -2.38 -0.02 1.99 16 32 H 0.12 6.40 5.20 -2.91 -0.02 6.39 16 33 H 0.09 4.97 8.06 -2.91 -0.02 4.95 16 34 H 0.29 13.57 8.30 -92.71 -0.77 12.80 16 35 H 0.11 6.16 6.18 -2.91 -0.02 6.15 16 36 H 0.13 4.85 6.70 -2.91 -0.02 4.83 16 Total: -1.00 -72.97 296.67 1.72 -71.26 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: 0.34 Total: 26.97 kcal Atomic # 6 Polarization: -33.70 SS G_CDS: 4.53 Total: -29.16 kcal Atomic # 7 Polarization: -78.29 SS G_CDS: -5.14 Total: -83.43 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -0.04 Total: -26.31 kcal Atomic # 14 Polarization: 38.65 SS G_CDS: 2.03 Total: 40.68 kcal Total: -72.97 1.72 -71.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071041452.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.686 kcal (2) G-P(sol) polarization free energy of solvation -72.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds