Wall clock time and date at job start Mon Mar 30 2020 04:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46905 * 110.99892 * 2 1 4 4 H 1.09000 * 110.43199 * 32.46058 * 3 2 1 5 5 C 1.54624 * 110.48550 * 155.00391 * 3 2 1 6 6 C 1.54478 * 101.76525 * 143.61010 * 5 3 2 7 7 N 1.46762 * 105.47551 * 334.58063 * 6 5 3 8 8 C 1.39230 * 124.35165 * 197.01714 * 7 6 5 9 9 C 1.39480 * 119.83461 * 6.07860 * 8 7 6 10 10 C 1.36375 * 120.16949 * 179.97438 * 9 8 7 11 11 C 1.40867 * 119.82841 * 0.02562 * 10 9 8 12 12 C 1.41152 * 120.16473 * 180.02562 * 11 10 9 13 13 H 1.08007 * 119.99997 * 214.59185 * 12 11 10 14 14 C 1.39908 * 120.00190 * 34.58313 * 12 11 10 15 15 N 1.30874 * 119.99965 * 356.05263 * 14 12 11 16 16 Si 1.86799 * 120.00075 * 176.04822 * 14 12 11 17 17 H 1.48500 * 109.47350 * 180.02562 * 16 14 12 18 18 H 1.48500 * 109.47196 * 300.00609 * 16 14 12 19 19 H 1.48502 * 109.47055 * 60.00298 * 16 14 12 20 20 C 1.40874 * 119.67521 * 0.26696 * 11 10 9 21 21 C 1.36377 * 119.82187 * 359.46898 * 20 11 10 22 22 C 1.34420 * 111.29753 * 17.28641 * 7 6 5 23 23 O 1.21280 * 124.94597 * 179.30778 * 22 7 6 24 24 H 1.09000 * 109.47003 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46819 * 299.99816 * 1 2 3 26 26 H 1.09003 * 109.47156 * 59.99698 * 1 2 3 27 27 H 1.00896 * 111.00493 * 123.95366 * 2 1 3 28 28 H 1.09000 * 110.97044 * 25.48784 * 5 3 2 29 29 H 1.09004 * 110.97181 * 261.73099 * 5 3 2 30 30 H 1.09001 * 110.24281 * 215.57955 * 6 5 3 31 31 H 1.08994 * 110.32070 * 93.62486 * 6 5 3 32 32 H 1.08002 * 119.91729 * 0.02562 * 9 8 7 33 33 H 1.07997 * 120.08336 * 179.97438 * 10 9 8 34 34 H 0.97002 * 119.99804 * 179.97438 * 15 14 12 35 35 H 1.07993 * 120.08983 * 179.72999 * 20 11 10 36 36 H 1.08001 * 119.91425 * 180.27181 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 1 1.3272 2.0356 0.5482 5 6 3.4150 1.4062 0.6121 6 6 4.1063 2.4805 -0.2565 7 7 3.3812 2.4786 -1.5325 8 6 3.8650 3.0384 -2.7119 9 6 5.1664 3.5380 -2.7600 10 6 5.6475 4.0872 -3.9119 11 6 4.8263 4.1496 -5.0547 12 6 5.3172 4.7161 -6.2508 13 1 4.6532 5.2694 -6.8985 14 6 6.6638 4.5611 -6.5971 15 7 7.4853 3.9579 -5.7761 16 14 7.2891 5.2148 -8.2314 17 1 8.7401 4.9254 -8.3578 18 1 6.5549 4.5562 -9.3416 19 1 7.0692 6.6821 -8.2944 20 6 3.5109 3.6486 -4.9966 21 6 3.0457 3.0973 -3.8392 22 6 2.1873 1.8721 -1.4147 23 8 1.3824 1.7427 -2.3125 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 1.8307 -0.5261 0.7813 28 1 3.9095 0.4408 0.5054 29 1 3.3816 1.7122 1.6577 30 1 5.1525 2.2201 -0.4168 31 1 4.0302 3.4583 0.2191 32 1 5.7950 3.4890 -1.8832 33 1 6.6552 4.4740 -3.9475 34 1 8.4189 3.8501 -6.0165 35 1 2.8741 3.6970 -5.8674 36 1 2.0390 2.7088 -3.7943 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071041454.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:41 Heat of formation + Delta-G solvation = -0.228721 kcal Electronic energy + Delta-G solvation = -19040.114199 eV Core-core repulsion = 16103.053699 eV Total energy + Delta-G solvation = -2937.060500 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.49248 -37.48193 -36.19242 -35.41100 -33.45789 -31.20383 -29.60341 -28.53153 -27.14839 -25.26077 -24.01794 -22.39545 -21.35416 -20.16911 -18.89844 -17.32801 -16.85959 -16.64675 -15.45306 -15.13551 -15.08444 -14.22213 -14.11494 -13.87267 -13.52367 -13.05294 -12.82064 -12.72004 -12.44394 -12.12017 -12.01998 -11.70730 -11.48978 -11.31331 -11.11626 -11.05153 -10.93719 -10.59876 -10.11085 -9.58104 -9.31623 -9.09025 -8.84638 -8.34421 -7.56127 -6.73617 -6.59137 -4.28911 2.50291 3.03867 3.08253 3.10851 3.13825 3.36098 3.54565 4.00327 4.13462 4.34479 4.52779 4.73243 4.93056 5.07625 5.23850 5.37475 5.44415 5.59653 5.65785 5.68170 5.90115 5.94674 6.17282 6.46923 6.66028 6.75580 6.82876 7.07499 7.19270 7.22879 7.33206 7.63542 7.67021 7.90758 8.08921 8.17550 8.34526 8.63844 8.76191 8.95526 9.02286 10.32421 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.045787 B = 0.004448 C = 0.004170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.377644 B = 6293.835624 C = 6713.537056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.673 5.673 3 C 0.054 3.946 4 H 0.079 0.921 5 C -0.135 4.135 6 C 0.101 3.899 7 N -0.533 5.533 8 C 0.028 3.972 9 C -0.131 4.131 10 C -0.134 4.134 11 C 0.093 3.907 12 C -0.462 4.462 13 H 0.075 0.925 14 C 0.070 3.930 15 N -0.815 5.815 16 Si 0.915 3.085 17 H -0.280 1.280 18 H -0.267 1.267 19 H -0.266 1.266 20 C -0.196 4.196 21 C -0.121 4.121 22 C 0.513 3.487 23 O -0.517 6.517 24 H 0.068 0.932 25 H 0.020 0.980 26 H 0.077 0.923 27 H 0.345 0.655 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.133 0.867 34 H 0.277 0.723 35 H 0.097 0.903 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.524 -3.894 13.269 14.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.305 5.305 3 C -0.059 4.059 4 H 0.097 0.903 5 C -0.173 4.173 6 C -0.022 4.022 7 N -0.258 5.258 8 C -0.063 4.063 9 C -0.151 4.151 10 C -0.154 4.154 11 C 0.090 3.910 12 C -0.493 4.493 13 H 0.093 0.907 14 C -0.145 4.145 15 N -0.442 5.442 16 Si 0.740 3.260 17 H -0.205 1.205 18 H -0.191 1.191 19 H -0.191 1.191 20 C -0.216 4.216 21 C -0.140 4.140 22 C 0.300 3.700 23 O -0.393 6.393 24 H 0.087 0.913 25 H 0.039 0.961 26 H 0.096 0.904 27 H 0.163 0.837 28 H 0.110 0.890 29 H 0.107 0.893 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.110 0.890 33 H 0.150 0.850 34 H 0.088 0.912 35 H 0.115 0.885 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.638 -4.087 12.094 13.583 hybrid contribution 0.332 0.444 0.251 0.609 sum -4.307 -3.643 12.345 13.573 Atomic orbital electron populations 1.22313 0.86842 1.02006 1.01062 1.60063 1.08678 1.11912 1.49848 1.22215 0.96669 0.91537 0.95486 0.90297 1.22851 0.94219 1.00762 0.99484 1.22014 0.97691 0.98952 0.83582 1.45162 1.17537 1.54001 1.09061 1.17355 0.94908 1.08885 0.85195 1.20210 0.92831 1.03495 0.98595 1.21183 1.01279 1.02273 0.90652 1.17720 0.90759 0.89876 0.92622 1.19451 0.94130 1.30637 1.05100 0.90707 1.25856 0.96551 0.93367 0.98678 1.69751 1.05254 1.33799 1.35439 0.86257 0.77800 0.79962 0.81948 1.20462 1.19129 1.19093 1.20820 0.98099 1.05921 0.96766 1.20828 0.99760 1.01321 0.92138 1.20461 0.81527 0.78294 0.89730 1.90541 1.46858 1.57471 1.44473 0.91326 0.96148 0.90416 0.83663 0.89019 0.89269 0.89741 0.90880 0.88989 0.84986 0.91159 0.88450 0.85493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.53 60.07 0.63 0.93 16 2 N -0.67 -8.15 6.69 -114.01 -0.76 -8.91 16 3 C 0.05 0.70 3.25 -67.72 -0.22 0.48 16 4 H 0.08 0.92 7.82 -51.93 -0.41 0.51 16 5 C -0.13 -1.35 6.60 -25.10 -0.17 -1.52 16 6 C 0.10 1.35 6.49 -3.12 -0.02 1.33 16 7 N -0.53 -10.16 3.12 -112.12 -0.35 -10.50 16 8 C 0.03 0.64 6.61 -83.57 -0.55 0.09 16 9 C -0.13 -3.04 9.34 -39.79 -0.37 -3.41 16 10 C -0.13 -3.48 8.61 -39.26 -0.34 -3.82 16 11 C 0.09 2.53 5.55 -106.80 -0.59 1.94 16 12 C -0.46 -12.51 9.03 -37.85 -0.34 -12.85 16 13 H 0.07 1.94 7.85 -52.48 -0.41 1.53 16 14 C 0.07 1.79 5.42 -17.33 -0.09 1.70 16 15 N -0.81 -21.30 10.60 55.55 0.59 -20.72 16 16 Si 0.92 19.19 29.56 -169.99 -5.03 14.17 16 17 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 18 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 19 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 20 C -0.20 -5.10 9.74 -39.26 -0.38 -5.48 16 21 C -0.12 -3.02 9.21 -39.79 -0.37 -3.39 16 22 C 0.51 9.68 7.56 -10.86 -0.08 9.60 16 23 O -0.52 -11.61 14.09 5.56 0.08 -11.53 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.02 0.19 8.08 -51.93 -0.42 -0.23 16 26 H 0.08 1.07 7.49 -51.93 -0.39 0.68 16 27 H 0.34 3.08 8.46 -39.29 -0.33 2.75 16 28 H 0.09 0.88 8.04 -51.93 -0.42 0.46 16 29 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.08 1.10 7.19 -51.93 -0.37 0.72 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.09 1.84 6.70 -52.49 -0.35 1.49 16 33 H 0.13 3.52 6.14 -52.49 -0.32 3.20 16 34 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 35 H 0.10 2.40 8.06 -52.49 -0.42 1.98 16 36 H 0.13 3.21 5.21 -52.49 -0.27 2.93 16 LS Contribution 297.06 15.07 4.48 4.48 Total: -1.00 -31.39 297.06 -8.41 -39.80 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -4.52 Total: 7.62 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: -2.90 Total: -14.40 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: -0.52 Total: -40.13 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.08 Total: -11.53 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.03 Total: 14.17 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.39 -8.41 -39.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071041454.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.569 kcal (2) G-P(sol) polarization free energy of solvation -31.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds