Wall clock time and date at job start Mon Mar 30 2020 04:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46905 * 110.99892 * 2 1 4 4 H 1.09000 * 110.43199 * 32.46058 * 3 2 1 5 5 C 1.54624 * 110.48550 * 155.00391 * 3 2 1 6 6 C 1.54478 * 101.76525 * 143.61010 * 5 3 2 7 7 N 1.46762 * 105.47551 * 334.58063 * 6 5 3 8 8 C 1.39230 * 124.35165 * 197.01714 * 7 6 5 9 9 C 1.39480 * 119.83461 * 6.07860 * 8 7 6 10 10 C 1.36375 * 120.16949 * 179.97438 * 9 8 7 11 11 C 1.40867 * 119.82841 * 0.02562 * 10 9 8 12 12 C 1.41152 * 120.16473 * 180.02562 * 11 10 9 13 13 H 1.08007 * 119.99997 * 214.59185 * 12 11 10 14 14 C 1.39908 * 120.00190 * 34.58313 * 12 11 10 15 15 N 1.30874 * 119.99965 * 356.05263 * 14 12 11 16 16 Si 1.86799 * 120.00075 * 176.04822 * 14 12 11 17 17 H 1.48500 * 109.47350 * 180.02562 * 16 14 12 18 18 H 1.48500 * 109.47196 * 300.00609 * 16 14 12 19 19 H 1.48502 * 109.47055 * 60.00298 * 16 14 12 20 20 C 1.40874 * 119.67521 * 0.26696 * 11 10 9 21 21 C 1.36377 * 119.82187 * 359.46898 * 20 11 10 22 22 C 1.34420 * 111.29753 * 17.28641 * 7 6 5 23 23 O 1.21280 * 124.94597 * 179.30778 * 22 7 6 24 24 H 1.09000 * 109.47003 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46819 * 299.99816 * 1 2 3 26 26 H 1.09003 * 109.47156 * 59.99698 * 1 2 3 27 27 H 1.00896 * 111.00493 * 123.95366 * 2 1 3 28 28 H 1.09000 * 110.97044 * 25.48784 * 5 3 2 29 29 H 1.09004 * 110.97181 * 261.73099 * 5 3 2 30 30 H 1.09001 * 110.24281 * 215.57955 * 6 5 3 31 31 H 1.08994 * 110.32070 * 93.62486 * 6 5 3 32 32 H 1.08002 * 119.91729 * 0.02562 * 9 8 7 33 33 H 1.07997 * 120.08336 * 179.97438 * 10 9 8 34 34 H 0.97002 * 119.99804 * 179.97438 * 15 14 12 35 35 H 1.07993 * 120.08983 * 179.72999 * 20 11 10 36 36 H 1.08001 * 119.91425 * 180.27181 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 1 1.3272 2.0356 0.5482 5 6 3.4150 1.4062 0.6121 6 6 4.1063 2.4805 -0.2565 7 7 3.3812 2.4786 -1.5325 8 6 3.8650 3.0384 -2.7119 9 6 5.1664 3.5380 -2.7600 10 6 5.6475 4.0872 -3.9119 11 6 4.8263 4.1496 -5.0547 12 6 5.3172 4.7161 -6.2508 13 1 4.6532 5.2694 -6.8985 14 6 6.6638 4.5611 -6.5971 15 7 7.4853 3.9579 -5.7761 16 14 7.2891 5.2148 -8.2314 17 1 8.7401 4.9254 -8.3578 18 1 6.5549 4.5562 -9.3416 19 1 7.0692 6.6821 -8.2944 20 6 3.5109 3.6486 -4.9966 21 6 3.0457 3.0973 -3.8392 22 6 2.1873 1.8721 -1.4147 23 8 1.3824 1.7427 -2.3125 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 1.8307 -0.5261 0.7813 28 1 3.9095 0.4408 0.5054 29 1 3.3816 1.7122 1.6577 30 1 5.1525 2.2201 -0.4168 31 1 4.0302 3.4583 0.2191 32 1 5.7950 3.4890 -1.8832 33 1 6.6552 4.4740 -3.9475 34 1 8.4189 3.8501 -6.0165 35 1 2.8741 3.6970 -5.8674 36 1 2.0390 2.7088 -3.7943 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071041454.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:40 Heat of formation + Delta-G solvation = -21.594733 kcal Electronic energy + Delta-G solvation = -19041.040699 eV Core-core repulsion = 16103.053699 eV Total energy + Delta-G solvation = -2937.987000 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.87551 -39.28170 -37.58462 -36.70639 -35.24064 -32.63253 -31.52651 -30.23342 -28.25938 -26.96585 -25.16214 -23.74224 -23.11696 -21.76182 -20.41166 -19.28502 -18.36992 -17.79203 -17.06036 -16.69627 -16.16522 -15.74598 -15.50169 -15.23732 -14.84507 -14.57811 -14.51539 -14.20962 -13.85224 -13.63966 -13.41614 -13.15227 -13.00595 -12.80969 -12.69602 -12.45265 -12.32313 -11.97574 -11.84205 -11.44267 -11.15984 -10.61133 -10.54167 -9.53839 -9.41074 -8.60994 -8.50136 -6.30455 0.73623 1.07366 1.39517 1.44282 1.51277 1.78612 2.12815 2.24827 2.80307 3.22133 3.30875 3.55000 3.67024 4.05065 4.14907 4.31441 4.36318 4.53258 4.56895 4.61143 4.66901 4.88380 4.92153 4.97196 5.06888 5.08055 5.12810 5.32391 5.44924 5.67206 5.78798 5.85307 6.01259 6.12627 6.38091 6.45344 6.53925 6.65452 6.96035 6.97534 7.29248 8.42728 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.045787 B = 0.004448 C = 0.004170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.377644 B = 6293.835624 C = 6713.537056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.690 5.690 3 C 0.066 3.934 4 H 0.100 0.900 5 C -0.114 4.114 6 C 0.088 3.912 7 N -0.546 5.546 8 C 0.040 3.960 9 C -0.127 4.127 10 C -0.148 4.148 11 C 0.061 3.939 12 C -0.501 4.501 13 H 0.070 0.930 14 C 0.030 3.970 15 N -0.841 5.841 16 Si 0.988 3.012 17 H -0.266 1.266 18 H -0.267 1.267 19 H -0.259 1.259 20 C -0.212 4.212 21 C -0.141 4.141 22 C 0.494 3.506 23 O -0.565 6.565 24 H 0.083 0.917 25 H 0.044 0.956 26 H 0.041 0.959 27 H 0.367 0.633 28 H 0.099 0.901 29 H 0.138 0.862 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.129 0.871 33 H 0.122 0.878 34 H 0.285 0.715 35 H 0.095 0.905 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.731 -4.495 15.907 16.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.325 5.325 3 C -0.047 4.047 4 H 0.117 0.883 5 C -0.151 4.151 6 C -0.034 4.034 7 N -0.269 5.269 8 C -0.053 4.053 9 C -0.147 4.147 10 C -0.169 4.169 11 C 0.058 3.942 12 C -0.532 4.532 13 H 0.089 0.911 14 C -0.182 4.182 15 N -0.469 5.469 16 Si 0.809 3.191 17 H -0.190 1.190 18 H -0.191 1.191 19 H -0.183 1.183 20 C -0.232 4.232 21 C -0.160 4.160 22 C 0.283 3.717 23 O -0.444 6.444 24 H 0.102 0.898 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.189 0.811 28 H 0.118 0.882 29 H 0.156 0.844 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.147 0.853 33 H 0.140 0.860 34 H 0.096 0.904 35 H 0.113 0.887 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.843 -4.711 14.808 16.007 hybrid contribution -0.015 0.549 -0.444 0.707 sum -3.858 -4.162 14.363 15.444 Atomic orbital electron populations 1.22264 0.86440 1.02866 1.00406 1.59894 1.09343 1.11780 1.51448 1.22136 0.99238 0.92222 0.91147 0.88250 1.22915 0.91108 1.00105 1.01011 1.22484 0.97820 1.01576 0.81507 1.45485 1.18512 1.53401 1.09519 1.17472 0.94480 1.06900 0.86407 1.20454 0.93142 1.02162 0.98906 1.21189 1.00867 1.03352 0.91446 1.18023 0.91438 0.91131 0.93593 1.19679 0.95459 1.32320 1.05728 0.91133 1.26703 0.96045 0.93129 1.02316 1.69804 1.05786 1.34203 1.37141 0.85159 0.77594 0.79441 0.76877 1.19009 1.19126 1.18316 1.20922 0.98181 1.06729 0.97386 1.20927 1.00037 1.02052 0.93032 1.21806 0.80634 0.77269 0.91996 1.90503 1.48275 1.58781 1.46848 0.89795 0.93726 0.94008 0.81116 0.88226 0.84433 0.89168 0.88764 0.85332 0.85981 0.90398 0.88686 0.86184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.53 127.69 1.34 1.93 16 2 N -0.69 -14.65 6.69 -514.61 -3.44 -18.10 16 3 C 0.07 1.49 3.25 44.91 0.15 1.64 16 4 H 0.10 1.90 7.82 -2.39 -0.02 1.88 16 5 C -0.11 -1.70 6.60 31.65 0.21 -1.49 16 6 C 0.09 2.01 6.49 86.83 0.56 2.58 16 7 N -0.55 -20.02 3.12 -627.22 -1.96 -21.98 16 8 C 0.04 1.87 6.61 38.57 0.25 2.13 16 9 C -0.13 -5.82 9.34 22.13 0.21 -5.61 16 10 C -0.15 -7.91 8.61 22.48 0.19 -7.71 16 11 C 0.06 3.45 5.55 -21.28 -0.12 3.33 16 12 C -0.50 -28.26 9.03 23.39 0.21 -28.05 16 13 H 0.07 3.86 7.85 -2.91 -0.02 3.84 16 14 C 0.03 1.56 5.42 85.24 0.46 2.02 16 15 N -0.84 -44.67 10.60 21.82 0.23 -44.44 16 16 Si 0.99 39.67 29.56 68.60 2.03 41.70 16 17 H -0.27 -9.98 7.11 99.48 0.71 -9.28 16 18 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 19 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 20 C -0.21 -11.67 9.74 22.48 0.22 -11.45 16 21 C -0.14 -7.33 9.21 22.14 0.20 -7.13 16 22 C 0.49 18.22 7.56 87.90 0.66 18.89 16 23 O -0.56 -26.04 14.09 -3.03 -0.04 -26.08 16 24 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.04 0.67 8.08 -2.38 -0.02 0.65 16 26 H 0.04 1.14 7.49 -2.39 -0.02 1.12 16 27 H 0.37 5.00 8.46 -89.70 -0.76 4.24 16 28 H 0.10 1.39 8.04 -2.39 -0.02 1.37 16 29 H 0.14 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.09 1.99 7.19 -2.39 -0.02 1.97 16 31 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.13 4.86 6.70 -2.91 -0.02 4.84 16 33 H 0.12 6.68 6.14 -2.91 -0.02 6.66 16 34 H 0.29 13.74 8.30 -92.71 -0.77 12.97 16 35 H 0.09 5.04 8.06 -2.91 -0.02 5.02 16 36 H 0.12 6.41 5.21 -2.91 -0.02 6.39 16 Total: -1.00 -73.10 297.06 1.72 -71.38 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: 0.34 Total: 26.45 kcal Atomic # 6 Polarization: -33.49 SS G_CDS: 4.56 Total: -28.93 kcal Atomic # 7 Polarization: -79.35 SS G_CDS: -5.17 Total: -84.51 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -0.04 Total: -26.08 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 2.03 Total: 41.70 kcal Total: -73.10 1.72 -71.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071041454.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.784 kcal (2) G-P(sol) polarization free energy of solvation -73.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds