Wall clock time and date at job start Mon Mar 30 2020 04:08:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30675 * 1
3 3 Si 1.86796 * 119.99679 * 2 1
4 4 H 1.48507 * 109.47282 * 269.99795 * 3 2 1
5 5 H 1.48501 * 109.47204 * 29.99965 * 3 2 1
6 6 H 1.48503 * 109.47424 * 150.00015 * 3 2 1
7 7 C 1.40040 * 120.00269 * 180.02562 * 2 1 3
8 8 H 1.07998 * 120.00265 * 179.97438 * 7 2 1
9 9 C 1.46376 * 120.00331 * 359.97438 * 7 2 1
10 10 O 1.21694 * 119.99591 * 0.02562 * 9 7 2
11 11 N 1.34777 * 120.00371 * 180.02562 * 9 7 2
12 12 C 1.46504 * 119.99813 * 180.02562 * 11 9 7
13 13 H 1.09000 * 110.35188 * 327.14114 * 12 11 9
14 14 C 1.54590 * 110.31021 * 89.28544 * 12 11 9
15 15 C 1.54936 * 102.92207 * 140.87017 * 14 12 11
16 16 N 1.48532 * 103.22946 * 322.58602 * 15 14 12
17 17 C 1.39668 * 111.00279 * 159.71614 * 16 15 14
18 18 C 1.38911 * 120.07600 * 296.63183 * 17 16 15
19 19 C 1.38108 * 119.92251 * 179.76833 * 18 17 16
20 20 C 1.38281 * 120.07537 * 0.50314 * 19 18 17
21 21 C 1.38295 * 120.15149 * 359.74595 * 20 19 18
22 22 C 1.38104 * 120.06969 * 0.02562 * 21 20 19
23 23 C 1.47909 * 105.81769 * 39.20592 * 16 15 14
24 24 H 0.96997 * 120.00410 * 0.02562 * 1 2 3
25 25 H 0.96995 * 119.99614 * 0.02562 * 11 9 7
26 26 H 1.08997 * 110.72755 * 259.22986 * 14 12 11
27 27 H 1.09008 * 110.72282 * 22.51585 * 14 12 11
28 28 H 1.08998 * 110.66368 * 81.02166 * 15 14 12
29 29 H 1.09004 * 110.66782 * 203.98208 * 15 14 12
30 30 H 1.07993 * 120.03710 * 359.97438 * 18 17 16
31 31 H 1.08000 * 119.96330 * 180.25057 * 19 18 17
32 32 H 1.08000 * 119.93003 * 179.72751 * 20 19 18
33 33 H 1.07999 * 119.96354 * 180.02562 * 21 20 19
34 34 H 1.08005 * 120.03186 * 180.02562 * 22 21 20
35 35 H 1.08996 * 109.91722 * 215.32001 * 23 16 15
36 36 H 1.08989 * 109.91529 * 94.02214 * 23 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3068 0.0000 0.0000
3 14 2.2406 1.6178 0.0000
4 1 2.4882 2.0465 -1.4001
5 1 1.4380 2.6527 0.7000
6 1 3.5383 1.4403 0.7000
7 6 2.0070 -1.2127 -0.0005
8 1 3.0870 -1.2127 -0.0010
9 6 1.2753 -2.4805 -0.0005
10 8 0.0583 -2.4805 -0.0005
11 7 1.9492 -3.6476 -0.0005
12 6 1.2167 -4.9164 -0.0011
13 1 0.2835 -4.8156 0.5530
14 6 0.9333 -5.3717 -1.4510
15 6 1.1500 -6.9043 -1.3815
16 7 2.2985 -7.0433 -0.4499
17 6 2.3528 -8.3306 0.0892
18 6 1.3178 -8.7935 0.8918
19 6 1.3726 -10.0687 1.4193
20 6 2.4609 -10.8807 1.1578
21 6 3.4954 -10.4211 0.3634
22 6 3.4448 -9.1487 -0.1711
23 6 2.0828 -6.0338 0.6094
24 1 -0.4850 0.8400 -0.0004
25 1 2.9191 -3.6475 -0.0002
26 1 -0.0933 -5.1398 -1.7345
27 1 1.6389 -4.9135 -2.1441
28 1 0.2663 -7.3999 -0.9794
29 1 1.3988 -7.3027 -2.3651
30 1 0.4698 -8.1581 1.1003
31 1 0.5663 -10.4307 2.0401
32 1 2.5033 -11.8759 1.5751
33 1 4.3438 -11.0580 0.1608
34 1 4.2529 -8.7906 -0.7918
35 1 3.0400 -5.6261 0.9342
36 1 1.5634 -6.4868 1.4537
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000082254931.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:08:55
Heat of formation + Delta-G solvation = -0.957958 kcal
Electronic energy + Delta-G solvation = -18744.859605 eV
Core-core repulsion = 15807.767483 eV
Total energy + Delta-G solvation = -2937.092122 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 260.127 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-40.21131 -38.11356 -36.61860 -33.39922 -32.32602 -31.05244 -30.87399 -28.47868
-27.79750 -25.81520 -23.03064 -22.33770 -20.91180 -20.50652 -19.40873 -17.57918
-17.11333 -15.95706 -15.72676 -15.25589 -14.78980 -14.51969 -14.16284 -13.91500
-13.55022 -13.14879 -12.85521 -12.61375 -12.29968 -12.15007 -11.94437 -11.51561
-11.31860 -11.20221 -11.11346 -10.95725 -10.83191 -10.43442 -10.34053 -10.20208
-9.02691 -8.84865 -8.73986 -8.47328 -7.61498 -7.49731 -6.17928 -4.63292
1.19449 1.31035 3.14976 3.21847 3.25287 3.64811 3.94252 4.11791
4.57819 4.77783 4.85463 4.86429 4.92916 5.02936 5.20721 5.33550
5.41387 5.45663 5.61273 5.63357 5.78297 5.85558 5.89298 5.97960
6.14083 6.19802 6.28750 6.40622 6.45149 6.48301 6.61737 6.75887
6.93807 7.44369 7.44587 7.94375 8.11977 8.34754 9.03482 9.54794
10.60705 10.79311
Molecular weight = 260.13amu
Principal moments of inertia in cm(-1)
A = 0.049584 B = 0.003774 C = 0.003699
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 564.561298 B = 7417.799108 C = 7568.673113
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.768 5.768
2 C 0.087 3.913
3 Si 0.908 3.092
4 H -0.272 1.272
5 H -0.280 1.280
6 H -0.265 1.265
7 C -0.545 4.545
8 H 0.067 0.933
9 C 0.555 3.445
10 O -0.582 6.582
11 N -0.757 5.757
12 C 0.150 3.850
13 H 0.083 0.917
14 C -0.132 4.132
15 C 0.041 3.959
16 N -0.485 5.485
17 C 0.090 3.910
18 C -0.151 4.151
19 C -0.112 4.112
20 C -0.130 4.130
21 C -0.117 4.117
22 C -0.098 4.098
23 C 0.033 3.967
24 H 0.268 0.732
25 H 0.382 0.618
26 H 0.074 0.926
27 H 0.078 0.922
28 H 0.047 0.953
29 H 0.081 0.919
30 H 0.122 0.878
31 H 0.120 0.880
32 H 0.119 0.881
33 H 0.123 0.877
34 H 0.128 0.872
35 H 0.086 0.914
36 H 0.053 0.947
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.411 -17.784 0.534 18.597
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.397 5.397
2 C -0.132 4.132
3 Si 0.732 3.268
4 H -0.198 1.198
5 H -0.205 1.205
6 H -0.189 1.189
7 C -0.582 4.582
8 H 0.086 0.914
9 C 0.359 3.641
10 O -0.465 6.465
11 N -0.411 5.411
12 C 0.042 3.958
13 H 0.101 0.899
14 C -0.172 4.172
15 C -0.085 4.085
16 N -0.207 5.207
17 C -0.005 4.005
18 C -0.171 4.171
19 C -0.131 4.131
20 C -0.148 4.148
21 C -0.135 4.135
22 C -0.117 4.117
23 C -0.094 4.094
24 H 0.078 0.922
25 H 0.214 0.786
26 H 0.093 0.907
27 H 0.097 0.903
28 H 0.065 0.935
29 H 0.099 0.901
30 H 0.140 0.860
31 H 0.138 0.862
32 H 0.137 0.863
33 H 0.141 0.859
34 H 0.146 0.854
35 H 0.104 0.896
36 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges 4.818 -17.550 0.275 18.201
hybrid contribution 0.156 0.594 0.450 0.761
sum 4.974 -16.956 0.725 17.685
Atomic orbital electron populations
1.70021 1.07045 1.27220 1.35437 1.25704 0.94613 1.00286 0.92616
0.86378 0.80158 0.81419 0.78820 1.19756 1.20504 1.18912 1.20891
0.93611 0.89409 1.54282 0.91427 1.18232 0.87222 0.82472 0.76168
1.90592 1.14084 1.86822 1.54951 1.46205 1.08448 1.04314 1.82179
1.21278 0.95493 0.84548 0.94502 0.89879 1.22996 1.02484 0.92725
0.98979 1.23330 0.90782 0.97749 0.96599 1.62461 1.42185 1.00933
1.15080 1.19155 0.94126 0.91270 0.95928 1.21748 0.99340 0.96774
0.99261 1.21023 0.98313 0.93948 0.99780 1.21140 0.94487 0.99788
0.99390 1.21102 0.98746 0.95806 0.97865 1.21050 0.97523 0.93263
0.99829 1.23333 1.00919 0.92444 0.92703 0.92153 0.78561 0.90732
0.90345 0.93482 0.90109 0.86039 0.86236 0.86267 0.85933 0.85373
0.89595 0.92916
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.77 -23.05 11.83 55.55 0.66 -22.40 16
2 C 0.09 2.44 5.50 -17.37 -0.10 2.35 16
3 Si 0.91 20.19 29.56 -169.99 -5.02 15.16 16
4 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16
5 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16
6 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16
7 C -0.54 -15.39 9.54 -35.63 -0.34 -15.73 16
8 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16
9 C 0.55 15.67 7.75 -12.99 -0.10 15.57 16
10 O -0.58 -18.63 14.67 5.19 0.08 -18.55 16
11 N -0.76 -16.82 5.05 -53.89 -0.27 -17.09 16
12 C 0.15 2.85 3.34 -66.57 -0.22 2.63 16
13 H 0.08 1.78 7.56 -51.93 -0.39 1.39 16
14 C -0.13 -2.29 6.78 -24.87 -0.17 -2.46 16
15 C 0.04 0.59 6.43 -1.90 -0.01 0.58 16
16 N -0.48 -7.01 5.28 -167.16 -0.88 -7.89 16
17 C 0.09 1.18 4.86 -83.79 -0.41 0.77 16
18 C -0.15 -1.85 7.91 -39.38 -0.31 -2.17 16
19 C -0.11 -1.17 10.04 -39.61 -0.40 -1.57 16
20 C -0.13 -1.25 10.04 -39.54 -0.40 -1.64 16
21 C -0.12 -1.15 10.04 -39.61 -0.40 -1.55 16
22 C -0.10 -1.14 9.97 -39.38 -0.39 -1.54 16
23 C 0.03 0.51 6.26 -2.75 -0.02 0.50 16
24 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16
25 H 0.38 7.63 8.33 -40.82 -0.34 7.29 16
26 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16
27 H 0.08 1.43 8.06 -51.92 -0.42 1.01 16
28 H 0.05 0.64 7.04 -51.93 -0.37 0.27 16
29 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16
30 H 0.12 1.48 7.04 -52.49 -0.37 1.11 16
31 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16
32 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16
33 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16
34 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16
35 H 0.09 1.34 7.65 -51.93 -0.40 0.94 16
36 H 0.05 0.78 6.29 -51.94 -0.33 0.46 16
LS Contribution 302.77 15.07 4.56 4.56
Total: -1.00 -33.35 302.77 -8.84 -42.19
By element:
Atomic # 1 Polarization: 12.98 SS G_CDS: -4.69 Total: 8.28 kcal
Atomic # 6 Polarization: -1.00 SS G_CDS: -3.26 Total: -4.26 kcal
Atomic # 7 Polarization: -46.88 SS G_CDS: -0.50 Total: -47.38 kcal
Atomic # 8 Polarization: -18.63 SS G_CDS: 0.08 Total: -18.55 kcal
Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.16 kcal
Total LS contribution 4.56 Total: 4.56 kcal
Total: -33.35 -8.84 -42.19 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000082254931.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 41.228 kcal
(2) G-P(sol) polarization free energy of solvation -33.351 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.877 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.835 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.186 kcal
(6) G-S(sol) free energy of system = (1) + (5) -0.958 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds