Wall clock time and date at job start Mon Mar 30 2020 04:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86796 * 119.99679 * 2 1 4 4 H 1.48507 * 109.47282 * 269.99795 * 3 2 1 5 5 H 1.48501 * 109.47204 * 29.99965 * 3 2 1 6 6 H 1.48503 * 109.47424 * 150.00015 * 3 2 1 7 7 C 1.40040 * 120.00269 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00265 * 179.97438 * 7 2 1 9 9 C 1.46376 * 120.00331 * 359.97438 * 7 2 1 10 10 O 1.21694 * 119.99591 * 0.02562 * 9 7 2 11 11 N 1.34777 * 120.00371 * 180.02562 * 9 7 2 12 12 C 1.46504 * 119.99813 * 180.02562 * 11 9 7 13 13 H 1.09000 * 110.35188 * 327.14114 * 12 11 9 14 14 C 1.54590 * 110.31021 * 89.28544 * 12 11 9 15 15 C 1.54936 * 102.92207 * 140.87017 * 14 12 11 16 16 N 1.48532 * 103.22946 * 322.58602 * 15 14 12 17 17 C 1.39668 * 111.00279 * 159.71614 * 16 15 14 18 18 C 1.38911 * 120.07600 * 296.63183 * 17 16 15 19 19 C 1.38108 * 119.92251 * 179.76833 * 18 17 16 20 20 C 1.38281 * 120.07537 * 0.50314 * 19 18 17 21 21 C 1.38295 * 120.15149 * 359.74595 * 20 19 18 22 22 C 1.38104 * 120.06969 * 0.02562 * 21 20 19 23 23 C 1.47909 * 105.81769 * 39.20592 * 16 15 14 24 24 H 0.96997 * 120.00410 * 0.02562 * 1 2 3 25 25 H 0.96995 * 119.99614 * 0.02562 * 11 9 7 26 26 H 1.08997 * 110.72755 * 259.22986 * 14 12 11 27 27 H 1.09008 * 110.72282 * 22.51585 * 14 12 11 28 28 H 1.08998 * 110.66368 * 81.02166 * 15 14 12 29 29 H 1.09004 * 110.66782 * 203.98208 * 15 14 12 30 30 H 1.07993 * 120.03710 * 359.97438 * 18 17 16 31 31 H 1.08000 * 119.96330 * 180.25057 * 19 18 17 32 32 H 1.08000 * 119.93003 * 179.72751 * 20 19 18 33 33 H 1.07999 * 119.96354 * 180.02562 * 21 20 19 34 34 H 1.08005 * 120.03186 * 180.02562 * 22 21 20 35 35 H 1.08996 * 109.91722 * 215.32001 * 23 16 15 36 36 H 1.08989 * 109.91529 * 94.02214 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.4882 2.0465 -1.4001 5 1 1.4380 2.6527 0.7000 6 1 3.5383 1.4403 0.7000 7 6 2.0070 -1.2127 -0.0005 8 1 3.0870 -1.2127 -0.0010 9 6 1.2753 -2.4805 -0.0005 10 8 0.0583 -2.4805 -0.0005 11 7 1.9492 -3.6476 -0.0005 12 6 1.2167 -4.9164 -0.0011 13 1 0.2835 -4.8156 0.5530 14 6 0.9333 -5.3717 -1.4510 15 6 1.1500 -6.9043 -1.3815 16 7 2.2985 -7.0433 -0.4499 17 6 2.3528 -8.3306 0.0892 18 6 1.3178 -8.7935 0.8918 19 6 1.3726 -10.0687 1.4193 20 6 2.4609 -10.8807 1.1578 21 6 3.4954 -10.4211 0.3634 22 6 3.4448 -9.1487 -0.1711 23 6 2.0828 -6.0338 0.6094 24 1 -0.4850 0.8400 -0.0004 25 1 2.9191 -3.6475 -0.0002 26 1 -0.0933 -5.1398 -1.7345 27 1 1.6389 -4.9135 -2.1441 28 1 0.2663 -7.3999 -0.9794 29 1 1.3988 -7.3027 -2.3651 30 1 0.4698 -8.1581 1.1003 31 1 0.5663 -10.4307 2.0401 32 1 2.5033 -11.8759 1.5751 33 1 4.3438 -11.0580 0.1608 34 1 4.2529 -8.7906 -0.7918 35 1 3.0400 -5.6261 0.9342 36 1 1.5634 -6.4868 1.4537 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082254931.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:55 Heat of formation + Delta-G solvation = -0.957958 kcal Electronic energy + Delta-G solvation = -18744.859605 eV Core-core repulsion = 15807.767483 eV Total energy + Delta-G solvation = -2937.092122 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.21131 -38.11356 -36.61860 -33.39922 -32.32602 -31.05244 -30.87399 -28.47868 -27.79750 -25.81520 -23.03064 -22.33770 -20.91180 -20.50652 -19.40873 -17.57918 -17.11333 -15.95706 -15.72676 -15.25589 -14.78980 -14.51969 -14.16284 -13.91500 -13.55022 -13.14879 -12.85521 -12.61375 -12.29968 -12.15007 -11.94437 -11.51561 -11.31860 -11.20221 -11.11346 -10.95725 -10.83191 -10.43442 -10.34053 -10.20208 -9.02691 -8.84865 -8.73986 -8.47328 -7.61498 -7.49731 -6.17928 -4.63292 1.19449 1.31035 3.14976 3.21847 3.25287 3.64811 3.94252 4.11791 4.57819 4.77783 4.85463 4.86429 4.92916 5.02936 5.20721 5.33550 5.41387 5.45663 5.61273 5.63357 5.78297 5.85558 5.89298 5.97960 6.14083 6.19802 6.28750 6.40622 6.45149 6.48301 6.61737 6.75887 6.93807 7.44369 7.44587 7.94375 8.11977 8.34754 9.03482 9.54794 10.60705 10.79311 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.049584 B = 0.003774 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.561298 B = 7417.799108 C = 7568.673113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.067 0.933 9 C 0.555 3.445 10 O -0.582 6.582 11 N -0.757 5.757 12 C 0.150 3.850 13 H 0.083 0.917 14 C -0.132 4.132 15 C 0.041 3.959 16 N -0.485 5.485 17 C 0.090 3.910 18 C -0.151 4.151 19 C -0.112 4.112 20 C -0.130 4.130 21 C -0.117 4.117 22 C -0.098 4.098 23 C 0.033 3.967 24 H 0.268 0.732 25 H 0.382 0.618 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.047 0.953 29 H 0.081 0.919 30 H 0.122 0.878 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.123 0.877 34 H 0.128 0.872 35 H 0.086 0.914 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.411 -17.784 0.534 18.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.086 0.914 9 C 0.359 3.641 10 O -0.465 6.465 11 N -0.411 5.411 12 C 0.042 3.958 13 H 0.101 0.899 14 C -0.172 4.172 15 C -0.085 4.085 16 N -0.207 5.207 17 C -0.005 4.005 18 C -0.171 4.171 19 C -0.131 4.131 20 C -0.148 4.148 21 C -0.135 4.135 22 C -0.117 4.117 23 C -0.094 4.094 24 H 0.078 0.922 25 H 0.214 0.786 26 H 0.093 0.907 27 H 0.097 0.903 28 H 0.065 0.935 29 H 0.099 0.901 30 H 0.140 0.860 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.141 0.859 34 H 0.146 0.854 35 H 0.104 0.896 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.818 -17.550 0.275 18.201 hybrid contribution 0.156 0.594 0.450 0.761 sum 4.974 -16.956 0.725 17.685 Atomic orbital electron populations 1.70021 1.07045 1.27220 1.35437 1.25704 0.94613 1.00286 0.92616 0.86378 0.80158 0.81419 0.78820 1.19756 1.20504 1.18912 1.20891 0.93611 0.89409 1.54282 0.91427 1.18232 0.87222 0.82472 0.76168 1.90592 1.14084 1.86822 1.54951 1.46205 1.08448 1.04314 1.82179 1.21278 0.95493 0.84548 0.94502 0.89879 1.22996 1.02484 0.92725 0.98979 1.23330 0.90782 0.97749 0.96599 1.62461 1.42185 1.00933 1.15080 1.19155 0.94126 0.91270 0.95928 1.21748 0.99340 0.96774 0.99261 1.21023 0.98313 0.93948 0.99780 1.21140 0.94487 0.99788 0.99390 1.21102 0.98746 0.95806 0.97865 1.21050 0.97523 0.93263 0.99829 1.23333 1.00919 0.92444 0.92703 0.92153 0.78561 0.90732 0.90345 0.93482 0.90109 0.86039 0.86236 0.86267 0.85933 0.85373 0.89595 0.92916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.05 11.83 55.55 0.66 -22.40 16 2 C 0.09 2.44 5.50 -17.37 -0.10 2.35 16 3 Si 0.91 20.19 29.56 -169.99 -5.02 15.16 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 6 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.54 -15.39 9.54 -35.63 -0.34 -15.73 16 8 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 9 C 0.55 15.67 7.75 -12.99 -0.10 15.57 16 10 O -0.58 -18.63 14.67 5.19 0.08 -18.55 16 11 N -0.76 -16.82 5.05 -53.89 -0.27 -17.09 16 12 C 0.15 2.85 3.34 -66.57 -0.22 2.63 16 13 H 0.08 1.78 7.56 -51.93 -0.39 1.39 16 14 C -0.13 -2.29 6.78 -24.87 -0.17 -2.46 16 15 C 0.04 0.59 6.43 -1.90 -0.01 0.58 16 16 N -0.48 -7.01 5.28 -167.16 -0.88 -7.89 16 17 C 0.09 1.18 4.86 -83.79 -0.41 0.77 16 18 C -0.15 -1.85 7.91 -39.38 -0.31 -2.17 16 19 C -0.11 -1.17 10.04 -39.61 -0.40 -1.57 16 20 C -0.13 -1.25 10.04 -39.54 -0.40 -1.64 16 21 C -0.12 -1.15 10.04 -39.61 -0.40 -1.55 16 22 C -0.10 -1.14 9.97 -39.38 -0.39 -1.54 16 23 C 0.03 0.51 6.26 -2.75 -0.02 0.50 16 24 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 25 H 0.38 7.63 8.33 -40.82 -0.34 7.29 16 26 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 27 H 0.08 1.43 8.06 -51.92 -0.42 1.01 16 28 H 0.05 0.64 7.04 -51.93 -0.37 0.27 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.12 1.48 7.04 -52.49 -0.37 1.11 16 31 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 33 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 34 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 35 H 0.09 1.34 7.65 -51.93 -0.40 0.94 16 36 H 0.05 0.78 6.29 -51.94 -0.33 0.46 16 LS Contribution 302.77 15.07 4.56 4.56 Total: -1.00 -33.35 302.77 -8.84 -42.19 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -4.69 Total: 8.28 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -3.26 Total: -4.26 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: -0.50 Total: -47.38 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: 0.08 Total: -18.55 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.35 -8.84 -42.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082254931.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.228 kcal (2) G-P(sol) polarization free energy of solvation -33.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds