Wall clock time and date at job start Mon Mar 30 2020 04:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86796 * 119.99679 * 2 1 4 4 H 1.48507 * 109.47282 * 269.99795 * 3 2 1 5 5 H 1.48501 * 109.47204 * 29.99965 * 3 2 1 6 6 H 1.48503 * 109.47424 * 150.00015 * 3 2 1 7 7 C 1.40040 * 120.00269 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00265 * 179.97438 * 7 2 1 9 9 C 1.46376 * 120.00331 * 359.97438 * 7 2 1 10 10 O 1.21694 * 119.99591 * 0.02562 * 9 7 2 11 11 N 1.34777 * 120.00371 * 180.02562 * 9 7 2 12 12 C 1.46504 * 119.99813 * 180.02562 * 11 9 7 13 13 H 1.09000 * 110.35188 * 327.14114 * 12 11 9 14 14 C 1.54590 * 110.31021 * 89.28544 * 12 11 9 15 15 C 1.54936 * 102.92207 * 140.87017 * 14 12 11 16 16 N 1.48532 * 103.22946 * 322.58602 * 15 14 12 17 17 C 1.39668 * 111.00279 * 159.71614 * 16 15 14 18 18 C 1.38911 * 120.07600 * 296.63183 * 17 16 15 19 19 C 1.38108 * 119.92251 * 179.76833 * 18 17 16 20 20 C 1.38281 * 120.07537 * 0.50314 * 19 18 17 21 21 C 1.38295 * 120.15149 * 359.74595 * 20 19 18 22 22 C 1.38104 * 120.06969 * 0.02562 * 21 20 19 23 23 C 1.47909 * 105.81769 * 39.20592 * 16 15 14 24 24 H 0.96997 * 120.00410 * 0.02562 * 1 2 3 25 25 H 0.96995 * 119.99614 * 0.02562 * 11 9 7 26 26 H 1.08997 * 110.72755 * 259.22986 * 14 12 11 27 27 H 1.09008 * 110.72282 * 22.51585 * 14 12 11 28 28 H 1.08998 * 110.66368 * 81.02166 * 15 14 12 29 29 H 1.09004 * 110.66782 * 203.98208 * 15 14 12 30 30 H 1.07993 * 120.03710 * 359.97438 * 18 17 16 31 31 H 1.08000 * 119.96330 * 180.25057 * 19 18 17 32 32 H 1.08000 * 119.93003 * 179.72751 * 20 19 18 33 33 H 1.07999 * 119.96354 * 180.02562 * 21 20 19 34 34 H 1.08005 * 120.03186 * 180.02562 * 22 21 20 35 35 H 1.08996 * 109.91722 * 215.32001 * 23 16 15 36 36 H 1.08989 * 109.91529 * 94.02214 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.4882 2.0465 -1.4001 5 1 1.4380 2.6527 0.7000 6 1 3.5383 1.4403 0.7000 7 6 2.0070 -1.2127 -0.0005 8 1 3.0870 -1.2127 -0.0010 9 6 1.2753 -2.4805 -0.0005 10 8 0.0583 -2.4805 -0.0005 11 7 1.9492 -3.6476 -0.0005 12 6 1.2167 -4.9164 -0.0011 13 1 0.2835 -4.8156 0.5530 14 6 0.9333 -5.3717 -1.4510 15 6 1.1500 -6.9043 -1.3815 16 7 2.2985 -7.0433 -0.4499 17 6 2.3528 -8.3306 0.0892 18 6 1.3178 -8.7935 0.8918 19 6 1.3726 -10.0687 1.4193 20 6 2.4609 -10.8807 1.1578 21 6 3.4954 -10.4211 0.3634 22 6 3.4448 -9.1487 -0.1711 23 6 2.0828 -6.0338 0.6094 24 1 -0.4850 0.8400 -0.0004 25 1 2.9191 -3.6475 -0.0002 26 1 -0.0933 -5.1398 -1.7345 27 1 1.6389 -4.9135 -2.1441 28 1 0.2663 -7.3999 -0.9794 29 1 1.3988 -7.3027 -2.3651 30 1 0.4698 -8.1581 1.1003 31 1 0.5663 -10.4307 2.0401 32 1 2.5033 -11.8759 1.5751 33 1 4.3438 -11.0580 0.1608 34 1 4.2529 -8.7906 -0.7918 35 1 3.0400 -5.6261 0.9342 36 1 1.5634 -6.4868 1.4537 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082254931.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:55 Heat of formation + Delta-G solvation = -24.235903 kcal Electronic energy + Delta-G solvation = -18745.869013 eV Core-core repulsion = 15807.767483 eV Total energy + Delta-G solvation = -2938.101530 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.32093 -39.58600 -38.27456 -35.11980 -34.39935 -32.36139 -31.82281 -29.78838 -29.22418 -27.72967 -24.06256 -23.25686 -22.63269 -21.60614 -21.22507 -19.26608 -18.41598 -17.53241 -17.08260 -16.69999 -16.10487 -15.92984 -15.41305 -15.23388 -14.80006 -14.55405 -14.31270 -14.05856 -13.77978 -13.67308 -13.07618 -13.00690 -12.87712 -12.63968 -12.62731 -12.37227 -12.21358 -12.06841 -12.00582 -11.84785 -10.93015 -9.87782 -9.84089 -9.72110 -9.56256 -9.40810 -8.28862 -6.85327 0.33651 0.48730 1.40599 1.41998 1.57306 2.24960 2.47059 2.79718 2.81652 3.10442 3.53089 3.63209 3.94530 4.02238 4.08760 4.16691 4.19942 4.28438 4.35675 4.54733 4.57208 4.67874 4.77086 4.78615 4.87538 5.01249 5.13557 5.15823 5.32386 5.48745 5.56356 5.61387 5.63710 5.88799 5.93039 6.22961 6.29936 6.42819 6.87257 7.55037 8.49751 8.67769 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.049584 B = 0.003774 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.561298 B = 7417.799108 C = 7568.673113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.028 3.972 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.249 1.249 7 C -0.574 4.574 8 H 0.087 0.913 9 C 0.540 3.460 10 O -0.631 6.631 11 N -0.744 5.744 12 C 0.144 3.856 13 H 0.052 0.948 14 C -0.128 4.128 15 C 0.054 3.946 16 N -0.483 5.483 17 C 0.063 3.937 18 C -0.166 4.166 19 C -0.117 4.117 20 C -0.125 4.125 21 C -0.114 4.114 22 C -0.106 4.106 23 C 0.048 3.952 24 H 0.274 0.726 25 H 0.395 0.605 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.054 0.946 29 H 0.098 0.902 30 H 0.113 0.887 31 H 0.138 0.862 32 H 0.149 0.851 33 H 0.151 0.849 34 H 0.132 0.868 35 H 0.089 0.911 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.570 -19.174 0.743 20.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.187 4.187 3 Si 0.818 3.182 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.172 1.172 7 C -0.610 4.610 8 H 0.105 0.895 9 C 0.344 3.656 10 O -0.518 6.518 11 N -0.398 5.398 12 C 0.037 3.963 13 H 0.070 0.930 14 C -0.168 4.168 15 C -0.072 4.072 16 N -0.205 5.205 17 C -0.031 4.031 18 C -0.186 4.186 19 C -0.135 4.135 20 C -0.143 4.143 21 C -0.132 4.132 22 C -0.125 4.125 23 C -0.079 4.079 24 H 0.084 0.916 25 H 0.229 0.771 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.116 0.884 30 H 0.131 0.869 31 H 0.156 0.844 32 H 0.167 0.833 33 H 0.169 0.831 34 H 0.150 0.850 35 H 0.107 0.893 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.022 -19.000 0.484 20.262 hybrid contribution -0.520 0.871 0.407 1.092 sum 6.502 -18.130 0.891 19.281 Atomic orbital electron populations 1.70187 1.09497 1.28900 1.36539 1.26968 0.95532 1.04947 0.91213 0.85013 0.78760 0.75077 0.79393 1.18649 1.19815 1.17247 1.21435 0.94730 0.90144 1.54715 0.89538 1.18585 0.86846 0.84278 0.75865 1.90547 1.16132 1.87904 1.57235 1.45876 1.09019 1.04171 1.80764 1.21382 0.94758 0.84328 0.95794 0.92957 1.22857 1.01231 0.95366 0.97305 1.23243 0.91374 0.94924 0.97693 1.62447 1.41829 1.01682 1.14523 1.19245 0.95468 0.90810 0.97566 1.21772 0.99069 0.97756 0.99958 1.21308 0.99334 0.93276 0.99598 1.21538 0.93585 1.00803 0.98364 1.21450 0.99628 0.95244 0.96898 1.21209 0.97124 0.93984 1.00186 1.23115 1.00144 0.91588 0.93093 0.91607 0.77084 0.92320 0.91226 0.92791 0.88379 0.86899 0.84376 0.83327 0.83145 0.84980 0.89293 0.92241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.75 11.83 21.83 0.26 -50.49 16 2 C 0.03 1.60 5.50 85.30 0.47 2.07 16 3 Si 1.00 41.32 29.56 68.60 2.03 43.35 16 4 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 5 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 6 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 7 C -0.57 -32.86 9.54 24.83 0.24 -32.63 16 8 H 0.09 4.45 7.85 -2.91 -0.02 4.43 16 9 C 0.54 31.64 7.75 86.36 0.67 32.31 16 10 O -0.63 -42.54 14.67 -4.33 -0.06 -42.60 16 11 N -0.74 -34.09 5.05 -442.64 -2.24 -36.33 16 12 C 0.14 5.72 3.34 45.87 0.15 5.88 16 13 H 0.05 2.40 7.56 -2.39 -0.02 2.38 16 14 C -0.13 -4.59 6.78 31.80 0.22 -4.38 16 15 C 0.05 1.51 6.43 86.65 0.56 2.07 16 16 N -0.48 -13.63 5.28 -682.79 -3.60 -17.23 16 17 C 0.06 1.58 4.86 38.22 0.19 1.76 16 18 C -0.17 -3.87 7.91 22.40 0.18 -3.69 16 19 C -0.12 -2.16 10.04 22.25 0.22 -1.94 16 20 C -0.13 -1.96 10.04 22.29 0.22 -1.73 16 21 C -0.11 -1.87 10.04 22.25 0.22 -1.64 16 22 C -0.11 -2.25 9.97 22.40 0.22 -2.03 16 23 C 0.05 1.49 6.26 86.45 0.54 2.04 16 24 H 0.27 15.32 8.29 -92.71 -0.77 14.55 16 25 H 0.39 15.92 8.33 -92.71 -0.77 15.15 16 26 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.07 2.60 8.06 -2.38 -0.02 2.58 16 28 H 0.05 1.45 7.04 -2.39 -0.02 1.43 16 29 H 0.10 2.44 8.14 -2.38 -0.02 2.42 16 30 H 0.11 2.75 7.04 -2.91 -0.02 2.73 16 31 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 32 H 0.15 1.45 8.06 -2.91 -0.02 1.42 16 33 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 34 H 0.13 2.62 8.06 -2.91 -0.02 2.60 16 35 H 0.09 2.73 7.65 -2.39 -0.02 2.71 16 36 H 0.06 1.78 6.29 -2.39 -0.02 1.77 16 Total: -1.00 -74.83 302.77 0.80 -74.04 By element: Atomic # 1 Polarization: 30.88 SS G_CDS: 0.32 Total: 31.20 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: 4.10 Total: -1.92 kcal Atomic # 7 Polarization: -98.47 SS G_CDS: -5.58 Total: -104.06 kcal Atomic # 8 Polarization: -42.54 SS G_CDS: -0.06 Total: -42.60 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Total: -74.83 0.80 -74.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082254931.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.800 kcal (2) G-P(sol) polarization free energy of solvation -74.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds