Wall clock time and date at job start Mon Mar 30 2020 04:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86808 * 119.99764 * 2 1 4 4 H 1.48498 * 109.47086 * 270.00429 * 3 2 1 5 5 H 1.48496 * 109.46951 * 29.99909 * 3 2 1 6 6 H 1.48497 * 109.47242 * 150.00232 * 3 2 1 7 7 C 1.40048 * 120.00465 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99977 * 179.97438 * 7 2 1 9 9 C 1.46367 * 119.99654 * 359.97438 * 7 2 1 10 10 O 1.21686 * 120.00384 * 359.97438 * 9 7 2 11 11 N 1.34784 * 119.99927 * 179.97438 * 9 7 2 12 12 C 1.46496 * 120.00061 * 180.02562 * 11 9 7 13 13 H 1.08996 * 110.63044 * 31.89088 * 12 11 9 14 14 C 1.55143 * 110.85630 * 268.68313 * 12 11 9 15 15 C 1.54898 * 101.65624 * 205.89624 * 14 12 11 16 16 N 1.47841 * 104.79655 * 37.07039 * 15 14 12 17 17 C 1.39678 * 111.00215 * 213.63845 * 16 15 14 18 18 C 1.38905 * 120.07731 * 157.12436 * 17 16 15 19 19 C 1.38107 * 119.92713 * 179.97438 * 18 17 16 20 20 C 1.38288 * 120.06978 * 359.97438 * 19 18 17 21 21 C 1.38283 * 120.15423 * 359.97438 * 20 19 18 22 22 C 1.38106 * 120.07368 * 0.02562 * 21 20 19 23 23 C 1.47442 * 108.56707 * 335.90395 * 16 15 14 24 24 H 0.96998 * 120.00463 * 359.97438 * 1 2 3 25 25 H 0.97004 * 119.99952 * 359.97438 * 11 9 7 26 26 H 1.09004 * 110.98841 * 323.99444 * 14 12 11 27 27 H 1.09001 * 110.98860 * 87.76195 * 14 12 11 28 28 H 1.09004 * 110.37178 * 278.24246 * 15 14 12 29 29 H 1.09002 * 110.37683 * 155.90131 * 15 14 12 30 30 H 1.08000 * 120.03515 * 359.69207 * 18 17 16 31 31 H 1.07993 * 119.96534 * 179.97438 * 19 18 17 32 32 H 1.08000 * 119.92284 * 180.02562 * 20 19 18 33 33 H 1.08001 * 119.96586 * 179.97438 * 21 20 19 34 34 H 1.08001 * 120.03541 * 180.02562 * 22 21 20 35 35 H 1.08998 * 109.88598 * 120.39529 * 23 16 15 36 36 H 1.09004 * 109.88915 * 241.42195 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4881 2.0466 -1.4001 5 1 1.4381 2.6527 0.7000 6 1 3.5382 1.4404 0.7000 7 6 2.0070 -1.2128 0.0005 8 1 3.0871 -1.2127 0.0001 9 6 1.2752 -2.4804 0.0017 10 8 0.0584 -2.4805 0.0026 11 7 1.9492 -3.6476 0.0017 12 6 1.2168 -4.9164 0.0022 13 1 0.2745 -4.8161 -0.5363 14 6 0.9700 -5.4110 1.4518 15 6 0.8465 -6.9410 1.2436 16 7 1.8324 -7.2594 0.1890 17 6 1.3806 -8.3050 -0.6194 18 6 1.8792 -8.4547 -1.9073 19 6 1.4307 -9.4900 -2.7037 20 6 0.4868 -10.3774 -2.2202 21 6 -0.0109 -10.2319 -0.9383 22 6 0.4332 -9.1989 -0.1365 23 6 2.0767 -6.0431 -0.6078 24 1 -0.4851 0.8400 0.0004 25 1 2.9192 -3.6476 0.0005 26 1 1.8165 -5.1716 2.0955 27 1 0.0463 -4.9952 1.8544 28 1 -0.1597 -7.1989 0.9129 29 1 1.0915 -7.4704 2.1644 30 1 2.6134 -7.7595 -2.2869 31 1 1.8176 -9.6066 -3.7052 32 1 0.1380 -11.1863 -2.8450 33 1 -0.7484 -10.9265 -0.5639 34 1 0.0444 -9.0861 0.8648 35 1 3.1315 -5.7729 -0.5580 36 1 1.7866 -6.2145 -1.6445 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082254932.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:57 Heat of formation + Delta-G solvation = -1.421403 kcal Electronic energy + Delta-G solvation = -18806.590298 eV Core-core repulsion = 15869.478080 eV Total energy + Delta-G solvation = -2937.112219 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.38001 -38.05379 -36.67685 -33.46327 -32.37057 -31.39198 -30.77531 -28.55576 -27.79526 -25.90304 -22.92143 -22.61671 -20.62113 -20.46350 -19.50893 -17.76581 -17.19837 -15.84105 -15.61207 -15.29209 -15.02205 -14.52126 -14.00992 -13.91912 -13.63137 -13.30115 -12.93207 -12.58454 -12.46972 -12.19089 -12.08244 -11.47578 -11.37179 -11.16037 -11.05546 -10.84411 -10.77773 -10.48746 -10.42619 -10.24152 -9.72303 -8.93887 -8.88445 -7.79320 -7.67532 -7.56359 -6.22138 -4.68030 1.39012 1.40962 3.12336 3.19374 3.22702 3.63157 4.04425 4.09184 4.51193 4.65464 4.76764 4.91357 4.94508 5.08346 5.13414 5.38382 5.42129 5.45036 5.52314 5.66105 5.69713 5.79873 5.88100 5.93937 6.03614 6.13088 6.20111 6.39485 6.47491 6.54279 6.60694 6.78240 7.00581 7.32571 7.40262 7.87088 8.03887 8.28864 8.99146 9.47627 10.55923 10.74024 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.044520 B = 0.003903 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.776432 B = 7171.412909 C = 7332.069735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.088 3.912 3 Si 0.908 3.092 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.068 0.932 9 C 0.555 3.445 10 O -0.580 6.580 11 N -0.756 5.756 12 C 0.142 3.858 13 H 0.087 0.913 14 C -0.141 4.141 15 C 0.039 3.961 16 N -0.477 5.477 17 C 0.119 3.881 18 C -0.159 4.159 19 C -0.092 4.092 20 C -0.159 4.159 21 C -0.093 4.093 22 C -0.167 4.167 23 C 0.032 3.968 24 H 0.268 0.732 25 H 0.382 0.618 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.062 0.938 29 H 0.083 0.917 30 H 0.126 0.874 31 H 0.120 0.880 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.125 0.875 35 H 0.085 0.915 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.125 -16.218 -1.535 16.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.086 0.914 9 C 0.359 3.641 10 O -0.463 6.463 11 N -0.410 5.410 12 C 0.033 3.967 13 H 0.105 0.895 14 C -0.181 4.181 15 C -0.087 4.087 16 N -0.189 5.189 17 C 0.019 3.981 18 C -0.180 4.180 19 C -0.111 4.111 20 C -0.178 4.178 21 C -0.111 4.111 22 C -0.188 4.188 23 C -0.094 4.094 24 H 0.079 0.921 25 H 0.214 0.786 26 H 0.095 0.905 27 H 0.099 0.901 28 H 0.080 0.920 29 H 0.101 0.899 30 H 0.143 0.857 31 H 0.138 0.862 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.143 0.857 35 H 0.103 0.897 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.536 -16.159 -1.252 16.405 hybrid contribution 0.381 0.913 -0.261 1.023 sum 2.916 -15.246 -1.513 15.596 Atomic orbital electron populations 1.70015 1.07068 1.27318 1.35207 1.25708 0.94619 1.00315 0.92584 0.86367 0.80157 0.81359 0.78845 1.19733 1.20454 1.18892 1.20879 0.93615 0.89333 1.54357 0.91381 1.18247 0.87240 0.82394 0.76213 1.90598 1.14072 1.86718 1.54877 1.46114 1.08407 1.04231 1.82283 1.21620 0.96086 0.84671 0.94280 0.89532 1.23187 1.03207 0.92587 0.99087 1.23268 0.93609 0.97291 0.94505 1.60509 1.40544 1.05976 1.11911 1.19256 0.92980 0.94350 0.91483 1.20935 1.03324 1.00519 0.93216 1.20978 0.96625 0.94251 0.99251 1.20999 0.99776 1.00678 0.96389 1.20965 0.98987 0.97089 0.94104 1.21036 0.99088 0.97549 1.01127 1.23379 1.01648 0.88049 0.96341 0.92079 0.78613 0.90541 0.90097 0.91994 0.89896 0.85658 0.86160 0.86502 0.86250 0.85686 0.89667 0.91014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.83 11.83 55.55 0.66 -22.18 16 2 C 0.09 2.42 5.50 -17.37 -0.10 2.33 16 3 Si 0.91 19.95 29.56 -169.99 -5.02 14.93 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.26 -5.63 7.11 56.52 0.40 -5.22 16 7 C -0.54 -15.18 9.54 -35.63 -0.34 -15.52 16 8 H 0.07 1.73 7.85 -52.48 -0.41 1.32 16 9 C 0.55 15.48 7.75 -12.99 -0.10 15.38 16 10 O -0.58 -18.46 14.66 5.20 0.08 -18.38 16 11 N -0.76 -16.42 5.18 -53.45 -0.28 -16.70 16 12 C 0.14 2.66 3.30 -66.11 -0.22 2.44 16 13 H 0.09 1.88 7.55 -51.93 -0.39 1.48 16 14 C -0.14 -2.37 6.77 -24.60 -0.17 -2.53 16 15 C 0.04 0.54 5.46 -2.30 -0.01 0.53 16 16 N -0.48 -6.85 5.27 -167.92 -0.89 -7.73 16 17 C 0.12 1.64 5.78 -83.79 -0.48 1.15 16 18 C -0.16 -2.04 8.60 -39.38 -0.34 -2.37 16 19 C -0.09 -1.03 10.04 -39.61 -0.40 -1.43 16 20 C -0.16 -1.70 10.04 -39.55 -0.40 -2.09 16 21 C -0.09 -1.02 10.04 -39.61 -0.40 -1.42 16 22 C -0.17 -2.08 8.66 -39.38 -0.34 -2.42 16 23 C 0.03 0.49 5.93 -2.84 -0.02 0.47 16 24 H 0.27 7.25 8.29 -40.82 -0.34 6.91 16 25 H 0.38 7.30 8.35 -40.82 -0.34 6.96 16 26 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 27 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 28 H 0.06 0.84 6.51 -51.93 -0.34 0.50 16 29 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.13 1.50 6.76 -52.49 -0.35 1.15 16 31 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 33 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.13 1.40 6.42 -52.49 -0.34 1.06 16 35 H 0.09 1.22 7.72 -51.93 -0.40 0.82 16 36 H 0.07 1.06 5.92 -51.93 -0.31 0.75 16 LS Contribution 299.19 15.07 4.51 4.51 Total: -1.00 -33.28 299.19 -8.80 -42.09 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -4.55 Total: 8.96 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -3.31 Total: -5.49 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: -0.51 Total: -46.61 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: 0.08 Total: -18.38 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.28 -8.80 -42.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082254932.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.666 kcal (2) G-P(sol) polarization free energy of solvation -33.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds