Wall clock time and date at job start Mon Mar 30 2020 04:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86808 * 119.99764 * 2 1 4 4 H 1.48498 * 109.47086 * 270.00429 * 3 2 1 5 5 H 1.48496 * 109.46951 * 29.99909 * 3 2 1 6 6 H 1.48497 * 109.47242 * 150.00232 * 3 2 1 7 7 C 1.40048 * 120.00465 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99977 * 179.97438 * 7 2 1 9 9 C 1.46367 * 119.99654 * 359.97438 * 7 2 1 10 10 O 1.21686 * 120.00384 * 359.97438 * 9 7 2 11 11 N 1.34784 * 119.99927 * 179.97438 * 9 7 2 12 12 C 1.46496 * 120.00061 * 180.02562 * 11 9 7 13 13 H 1.08996 * 110.63044 * 31.89088 * 12 11 9 14 14 C 1.55143 * 110.85630 * 268.68313 * 12 11 9 15 15 C 1.54898 * 101.65624 * 205.89624 * 14 12 11 16 16 N 1.47841 * 104.79655 * 37.07039 * 15 14 12 17 17 C 1.39678 * 111.00215 * 213.63845 * 16 15 14 18 18 C 1.38905 * 120.07731 * 157.12436 * 17 16 15 19 19 C 1.38107 * 119.92713 * 179.97438 * 18 17 16 20 20 C 1.38288 * 120.06978 * 359.97438 * 19 18 17 21 21 C 1.38283 * 120.15423 * 359.97438 * 20 19 18 22 22 C 1.38106 * 120.07368 * 0.02562 * 21 20 19 23 23 C 1.47442 * 108.56707 * 335.90395 * 16 15 14 24 24 H 0.96998 * 120.00463 * 359.97438 * 1 2 3 25 25 H 0.97004 * 119.99952 * 359.97438 * 11 9 7 26 26 H 1.09004 * 110.98841 * 323.99444 * 14 12 11 27 27 H 1.09001 * 110.98860 * 87.76195 * 14 12 11 28 28 H 1.09004 * 110.37178 * 278.24246 * 15 14 12 29 29 H 1.09002 * 110.37683 * 155.90131 * 15 14 12 30 30 H 1.08000 * 120.03515 * 359.69207 * 18 17 16 31 31 H 1.07993 * 119.96534 * 179.97438 * 19 18 17 32 32 H 1.08000 * 119.92284 * 180.02562 * 20 19 18 33 33 H 1.08001 * 119.96586 * 179.97438 * 21 20 19 34 34 H 1.08001 * 120.03541 * 180.02562 * 22 21 20 35 35 H 1.08998 * 109.88598 * 120.39529 * 23 16 15 36 36 H 1.09004 * 109.88915 * 241.42195 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4881 2.0466 -1.4001 5 1 1.4381 2.6527 0.7000 6 1 3.5382 1.4404 0.7000 7 6 2.0070 -1.2128 0.0005 8 1 3.0871 -1.2127 0.0001 9 6 1.2752 -2.4804 0.0017 10 8 0.0584 -2.4805 0.0026 11 7 1.9492 -3.6476 0.0017 12 6 1.2168 -4.9164 0.0022 13 1 0.2745 -4.8161 -0.5363 14 6 0.9700 -5.4110 1.4518 15 6 0.8465 -6.9410 1.2436 16 7 1.8324 -7.2594 0.1890 17 6 1.3806 -8.3050 -0.6194 18 6 1.8792 -8.4547 -1.9073 19 6 1.4307 -9.4900 -2.7037 20 6 0.4868 -10.3774 -2.2202 21 6 -0.0109 -10.2319 -0.9383 22 6 0.4332 -9.1989 -0.1365 23 6 2.0767 -6.0431 -0.6078 24 1 -0.4851 0.8400 0.0004 25 1 2.9192 -3.6476 0.0005 26 1 1.8165 -5.1716 2.0955 27 1 0.0463 -4.9952 1.8544 28 1 -0.1597 -7.1989 0.9129 29 1 1.0915 -7.4704 2.1644 30 1 2.6134 -7.7595 -2.2869 31 1 1.8176 -9.6066 -3.7052 32 1 0.1380 -11.1863 -2.8450 33 1 -0.7484 -10.9265 -0.5639 34 1 0.0444 -9.0861 0.8648 35 1 3.1315 -5.7729 -0.5580 36 1 1.7866 -6.2145 -1.6445 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082254932.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:57 Heat of formation + Delta-G solvation = -24.828668 kcal Electronic energy + Delta-G solvation = -18807.605314 eV Core-core repulsion = 15869.478080 eV Total energy + Delta-G solvation = -2938.127234 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.49773 -39.56805 -38.27356 -35.16887 -34.43246 -32.52105 -32.00002 -29.78260 -29.19872 -27.77278 -23.98265 -23.82149 -22.18149 -21.53716 -21.23132 -19.29945 -18.63631 -17.59218 -17.06523 -16.59874 -16.18075 -15.83314 -15.43452 -15.26833 -14.84139 -14.67402 -14.31709 -14.29038 -13.83574 -13.63291 -13.32020 -12.99755 -12.84464 -12.65057 -12.52743 -12.42178 -12.21085 -12.02100 -11.88491 -11.75055 -10.93959 -10.76547 -9.89250 -9.82460 -9.50737 -8.79549 -8.30209 -6.86985 0.48196 0.50323 1.40453 1.41634 1.57123 2.23740 2.45380 2.60039 3.02736 3.09710 3.43918 3.60979 3.76520 4.04029 4.06048 4.11196 4.20140 4.25815 4.32995 4.53056 4.59995 4.61798 4.71980 4.80160 4.86628 4.99329 5.07675 5.12905 5.26504 5.31315 5.53108 5.67534 5.84929 5.87085 5.93170 6.20119 6.25426 6.33369 6.85940 7.52272 8.47705 8.66039 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.044520 B = 0.003903 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.776432 B = 7171.412909 C = 7332.069735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.029 3.971 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.249 1.249 7 C -0.573 4.573 8 H 0.088 0.912 9 C 0.540 3.460 10 O -0.631 6.631 11 N -0.743 5.743 12 C 0.135 3.865 13 H 0.050 0.950 14 C -0.136 4.136 15 C 0.050 3.950 16 N -0.476 5.476 17 C 0.090 3.910 18 C -0.174 4.174 19 C -0.099 4.099 20 C -0.158 4.158 21 C -0.097 4.097 22 C -0.177 4.177 23 C 0.047 3.953 24 H 0.274 0.726 25 H 0.397 0.603 26 H 0.079 0.921 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.106 0.894 30 H 0.127 0.873 31 H 0.143 0.857 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.133 0.867 35 H 0.098 0.902 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.656 -17.287 -1.842 17.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.186 4.186 3 Si 0.818 3.182 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.172 1.172 7 C -0.609 4.609 8 H 0.107 0.893 9 C 0.344 3.656 10 O -0.518 6.518 11 N -0.397 5.397 12 C 0.028 3.972 13 H 0.068 0.932 14 C -0.176 4.176 15 C -0.076 4.076 16 N -0.189 5.189 17 C -0.008 4.008 18 C -0.194 4.194 19 C -0.117 4.117 20 C -0.177 4.177 21 C -0.116 4.116 22 C -0.198 4.198 23 C -0.079 4.079 24 H 0.084 0.916 25 H 0.231 0.769 26 H 0.098 0.902 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.125 0.875 30 H 0.145 0.855 31 H 0.160 0.840 32 H 0.162 0.838 33 H 0.163 0.837 34 H 0.151 0.849 35 H 0.116 0.884 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.112 -17.297 -1.564 17.848 hybrid contribution -0.145 1.100 -0.218 1.130 sum 3.967 -16.198 -1.781 16.771 Atomic orbital electron populations 1.70185 1.09539 1.28948 1.36443 1.26972 0.95510 1.04966 0.91183 0.85012 0.78774 0.75058 0.79403 1.18634 1.19880 1.17184 1.21435 0.94793 0.90020 1.54682 0.89347 1.18604 0.86846 0.84261 0.75885 1.90553 1.16212 1.87849 1.57194 1.45736 1.09075 1.03994 1.80861 1.21705 0.95118 0.84588 0.95834 0.93213 1.23062 1.02171 0.94931 0.97421 1.23225 0.93962 0.94811 0.95574 1.60642 1.40933 1.05450 1.11892 1.19448 0.94468 0.94722 0.92189 1.21121 1.03687 1.01333 0.93277 1.21311 0.96569 0.93727 1.00108 1.21405 0.98857 1.00863 0.96547 1.21328 0.99152 0.96955 0.94154 1.21264 0.98869 0.97797 1.01878 1.23206 1.01308 0.87130 0.96291 0.91583 0.76892 0.90212 0.92292 0.91799 0.87537 0.85523 0.83953 0.83837 0.83740 0.84873 0.88425 0.90800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.34 11.83 21.84 0.26 -50.08 16 2 C 0.03 1.60 5.50 85.30 0.47 2.07 16 3 Si 1.00 40.75 29.56 68.60 2.03 42.78 16 4 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 6 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 7 C -0.57 -32.29 9.54 24.83 0.24 -32.05 16 8 H 0.09 4.45 7.85 -2.91 -0.02 4.42 16 9 C 0.54 31.17 7.75 86.36 0.67 31.84 16 10 O -0.63 -42.26 14.66 -4.30 -0.06 -42.32 16 11 N -0.74 -33.05 5.18 -441.23 -2.28 -35.33 16 12 C 0.14 5.25 3.30 46.17 0.15 5.40 16 13 H 0.05 2.30 7.55 -2.39 -0.02 2.28 16 14 C -0.14 -4.68 6.77 31.98 0.22 -4.46 16 15 C 0.05 1.36 5.46 86.77 0.47 1.83 16 16 N -0.48 -13.24 5.27 -685.18 -3.61 -16.85 16 17 C 0.09 2.39 5.78 38.21 0.22 2.61 16 18 C -0.17 -4.23 8.60 22.40 0.19 -4.03 16 19 C -0.10 -1.99 10.04 22.25 0.22 -1.77 16 20 C -0.16 -2.91 10.04 22.29 0.22 -2.69 16 21 C -0.10 -1.89 10.04 22.25 0.22 -1.67 16 22 C -0.18 -4.11 8.66 22.40 0.19 -3.92 16 23 C 0.05 1.42 5.93 86.65 0.51 1.93 16 24 H 0.27 15.22 8.29 -92.71 -0.77 14.45 16 25 H 0.40 15.14 8.35 -92.71 -0.77 14.37 16 26 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 27 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.06 1.70 6.51 -2.39 -0.02 1.69 16 29 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.13 2.93 6.76 -2.91 -0.02 2.91 16 31 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 32 H 0.14 1.85 8.06 -2.91 -0.02 1.82 16 33 H 0.14 2.01 8.06 -2.91 -0.02 1.98 16 34 H 0.13 2.75 6.42 -2.91 -0.02 2.73 16 35 H 0.10 2.70 7.72 -2.39 -0.02 2.68 16 36 H 0.07 2.19 5.92 -2.39 -0.01 2.17 16 Total: -1.00 -74.77 299.19 0.66 -74.12 By element: Atomic # 1 Polarization: 32.28 SS G_CDS: 0.32 Total: 32.60 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: 4.01 Total: -4.91 kcal Atomic # 7 Polarization: -96.63 SS G_CDS: -5.64 Total: -102.27 kcal Atomic # 8 Polarization: -42.26 SS G_CDS: -0.06 Total: -42.32 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.78 kcal Total: -74.77 0.66 -74.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082254932.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.287 kcal (2) G-P(sol) polarization free energy of solvation -74.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds