Wall clock time and date at job start Mon Mar 30 2020 05:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47155 * 2 1 4 4 C 1.53000 * 109.47345 * 119.99819 * 2 1 3 5 5 N 1.46499 * 109.46840 * 65.00000 * 4 2 1 6 6 C 1.46502 * 119.99658 * 90.00442 * 5 4 2 7 7 C 1.50701 * 109.47310 * 89.99973 * 6 5 4 8 8 H 1.07997 * 119.99940 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00037 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99860 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99877 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47306 * 0.02562 * 11 9 7 13 13 H 1.48508 * 109.46804 * 120.00246 * 11 9 7 14 14 H 1.48498 * 109.47100 * 239.99886 * 11 9 7 15 15 C 1.38560 * 120.00530 * 270.00092 * 5 4 2 16 16 C 1.39761 * 119.97605 * 4.72449 * 15 5 4 17 17 N 1.31550 * 120.02617 * 179.74884 * 16 15 5 18 18 C 1.33304 * 119.99538 * 0.52901 * 17 16 15 19 19 C 1.43200 * 120.01978 * 179.70635 * 18 17 16 20 20 N 7.93095 * 44.28437 * 136.82801 * 2 1 3 21 21 C 1.39507 * 119.96145 * 359.72642 * 18 17 16 22 22 N 1.32043 * 119.97115 * 0.02562 * 21 18 17 23 23 H 1.08993 * 109.47639 * 299.99905 * 1 2 3 24 24 H 1.09004 * 109.47135 * 60.00050 * 1 2 3 25 25 H 1.09002 * 109.47179 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47493 * 240.00117 * 2 1 3 27 27 H 1.08996 * 109.46751 * 299.99968 * 3 2 1 28 28 H 1.09002 * 109.46824 * 59.99708 * 3 2 1 29 29 H 1.09001 * 109.47241 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47398 * 185.00327 * 4 2 1 31 31 H 1.09001 * 109.47194 * 305.00507 * 4 2 1 32 32 H 1.08998 * 109.46888 * 209.99779 * 6 5 4 33 33 H 1.08994 * 109.47490 * 329.99842 * 6 5 4 34 34 H 0.97000 * 119.99433 * 179.97438 * 10 9 7 35 35 H 1.07995 * 119.98241 * 0.02562 * 16 15 5 36 36 H 1.08005 * 120.01569 * 179.97438 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6524 -2.1328 1.1906 6 6 2.5428 -3.1112 0.5612 7 6 3.4833 -3.6731 1.5960 8 1 3.4240 -3.3349 2.6200 9 6 4.4195 -4.6190 1.2355 10 7 4.4913 -5.0313 -0.0113 11 14 5.5857 -5.3150 2.5181 12 1 5.3014 -4.6920 3.8357 13 1 5.3954 -6.7847 2.6145 14 1 6.9871 -5.0222 2.1236 15 6 0.4438 -2.5425 1.7303 16 6 -0.4490 -1.5967 2.2418 17 7 -1.5988 -1.9842 2.7499 18 6 -1.9082 -3.2803 2.7867 19 6 -3.1571 -3.7032 3.3455 20 7 -4.1477 -4.0386 3.7887 21 6 -1.0145 -4.2245 2.2810 22 7 0.1372 -3.8336 1.7668 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6766 1.9563 -0.8900 28 1 1.6765 1.9564 0.8900 29 1 3.1300 1.4426 0.0005 30 1 3.1263 -0.6442 1.2952 31 1 1.6053 -0.2617 2.1370 32 1 1.9498 -3.9190 0.1325 33 1 3.1180 -2.6251 -0.2267 34 1 5.1502 -5.6964 -0.2649 35 1 -0.1967 -0.5469 2.2157 36 1 -1.2641 -5.2749 2.3107 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083644838.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:05 Heat of formation + Delta-G solvation = 81.256831 kcal Electronic energy + Delta-G solvation = -19148.132295 eV Core-core repulsion = 16246.898025 eV Total energy + Delta-G solvation = -2901.234270 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.133 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.84788 -37.84207 -36.23249 -34.76927 -33.42778 -32.66911 -30.63311 -27.85830 -27.16289 -26.06064 -24.45790 -23.58655 -21.64147 -20.14049 -18.97640 -17.35209 -17.16289 -16.56122 -15.14456 -15.10484 -14.80733 -14.41471 -14.09496 -13.95767 -13.73497 -12.99928 -12.81043 -12.64660 -12.58119 -12.51197 -11.97924 -11.82309 -11.60275 -11.33378 -11.11230 -11.03172 -10.88741 -10.82172 -10.65700 -10.52189 -10.24176 -9.96738 -9.28857 -8.70403 -8.56372 -7.19647 -6.16502 -4.23170 0.96489 1.50274 2.77898 3.17902 3.21536 3.28233 3.30541 3.36624 3.91981 4.23385 4.33087 4.68942 4.71670 4.91146 4.95025 4.98573 5.16142 5.17826 5.43025 5.48271 5.62362 5.66213 5.74029 5.86082 5.94992 6.00490 6.13461 6.30139 6.33555 6.41186 6.72958 7.20168 7.39178 7.55935 7.68985 7.79253 7.93180 8.04626 8.32176 8.80375 9.42250 10.89891 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.013841 B = 0.007336 C = 0.005147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.476079 B = 3815.629231 C = 5438.956401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.143 4.143 4 C 0.119 3.881 5 N -0.552 5.552 6 C 0.246 3.754 7 C -0.526 4.526 8 H 0.058 0.942 9 C 0.065 3.935 10 N -0.892 5.892 11 Si 0.897 3.103 12 H -0.274 1.274 13 H -0.282 1.282 14 H -0.283 1.283 15 C 0.395 3.605 16 C -0.021 4.021 17 N -0.373 5.373 18 C 0.008 3.992 19 C 0.295 3.705 20 N -0.431 5.431 21 C 0.175 3.825 22 N -0.484 5.484 23 H 0.058 0.942 24 H 0.052 0.948 25 H 0.057 0.943 26 H 0.079 0.921 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.093 0.907 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.036 0.964 34 H 0.264 0.736 35 H 0.174 0.826 36 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.810 9.509 -0.089 10.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.137 4.137 3 C -0.201 4.201 4 C -0.005 4.005 5 N -0.253 5.253 6 C 0.127 3.873 7 C -0.565 4.565 8 H 0.076 0.924 9 C -0.138 4.138 10 N -0.531 5.531 11 Si 0.725 3.275 12 H -0.198 1.198 13 H -0.208 1.208 14 H -0.210 1.210 15 C 0.150 3.850 16 C -0.198 4.198 17 N -0.087 5.087 18 C -0.132 4.132 19 C -0.021 4.021 20 N -0.109 5.109 21 C 0.007 3.993 22 N -0.204 5.204 23 H 0.077 0.923 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.097 0.903 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.111 0.889 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.191 0.809 36 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -5.949 8.927 0.342 10.733 hybrid contribution 1.187 -0.389 0.451 1.329 sum -4.761 8.538 0.793 9.807 Atomic orbital electron populations 1.22128 0.95243 1.01932 1.01513 1.21626 0.96143 0.96323 0.99630 1.21765 1.01270 0.95344 1.01737 1.21734 1.01656 0.79878 0.97200 1.47432 1.15002 1.08568 1.54315 1.19520 0.88048 0.86742 0.92944 1.21373 1.16331 1.23324 0.95446 0.92378 1.24890 0.97372 0.96076 0.95429 1.69927 1.35592 1.31051 1.16519 0.86462 0.80445 0.79065 0.81569 1.19838 1.20818 1.20954 1.19706 0.87503 0.89881 0.87900 1.23369 0.91067 1.00891 1.04449 1.67948 1.16649 1.15500 1.08612 1.16780 0.92853 0.91220 1.12359 1.24799 0.91663 0.93144 0.92524 1.81187 1.10812 1.08454 1.10489 1.23448 0.87101 1.00331 0.88443 1.68423 1.17159 1.14957 1.19892 0.92286 0.92844 0.92445 0.90292 0.92586 0.92623 0.92332 0.88879 0.91002 0.93083 0.94604 0.92640 0.80945 0.81371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 7.56 37.15 0.28 -1.42 16 2 C -0.12 -1.38 3.13 -90.62 -0.28 -1.66 16 3 C -0.14 -1.33 9.19 37.16 0.34 -0.99 16 4 C 0.12 1.64 4.95 -4.04 -0.02 1.62 16 5 N -0.55 -9.89 2.43 -175.05 -0.42 -10.31 16 6 C 0.25 5.58 5.14 -5.19 -0.03 5.55 16 7 C -0.53 -13.36 9.39 -34.44 -0.32 -13.69 16 8 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 9 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -24.54 13.29 55.43 0.74 -23.80 16 11 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 12 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 13 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 14 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 15 C 0.39 6.90 6.35 -154.91 -0.98 5.92 16 16 C -0.02 -0.32 8.16 -17.10 -0.14 -0.46 16 17 N -0.37 -5.86 10.41 -10.72 -0.11 -5.97 16 18 C 0.01 0.13 6.58 -84.83 -0.56 -0.43 16 19 C 0.29 4.55 15.56 -22.48 -0.35 4.20 16 20 N -0.43 -7.14 18.54 41.83 0.78 -6.36 16 21 C 0.17 2.71 10.92 -16.99 -0.19 2.52 16 22 N -0.48 -9.07 9.31 -11.93 -0.11 -9.18 16 23 H 0.06 0.59 6.40 -51.93 -0.33 0.26 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.77 5.72 -51.93 -0.30 0.48 16 26 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.09 1.34 8.07 -51.93 -0.42 0.92 16 31 H 0.07 0.85 6.38 -51.93 -0.33 0.51 16 32 H 0.05 1.29 7.46 -51.93 -0.39 0.90 16 33 H 0.04 0.84 8.07 -51.93 -0.42 0.42 16 34 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 35 H 0.17 2.13 3.96 -52.49 -0.21 1.92 16 36 H 0.17 2.09 8.06 -52.48 -0.42 1.67 16 LS Contribution 308.18 15.07 4.64 4.64 Total: -1.00 -28.59 308.18 -6.33 -34.92 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: -4.48 Total: -2.22 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -2.35 Total: 2.77 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: 0.86 Total: -55.63 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.59 -6.33 -34.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083644838.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.181 kcal (2) G-P(sol) polarization free energy of solvation -28.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds