Wall clock time and date at job start Mon Mar 30 2020 05:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47155 * 2 1 4 4 C 1.53000 * 109.47345 * 119.99819 * 2 1 3 5 5 N 1.46499 * 109.46840 * 65.00000 * 4 2 1 6 6 C 1.46502 * 119.99658 * 90.00442 * 5 4 2 7 7 C 1.50701 * 109.47310 * 89.99973 * 6 5 4 8 8 H 1.07997 * 119.99940 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00037 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99860 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99877 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47306 * 0.02562 * 11 9 7 13 13 H 1.48508 * 109.46804 * 120.00246 * 11 9 7 14 14 H 1.48498 * 109.47100 * 239.99886 * 11 9 7 15 15 C 1.38560 * 120.00530 * 270.00092 * 5 4 2 16 16 C 1.39761 * 119.97605 * 4.72449 * 15 5 4 17 17 N 1.31550 * 120.02617 * 179.74884 * 16 15 5 18 18 C 1.33304 * 119.99538 * 0.52901 * 17 16 15 19 19 C 1.43200 * 120.01978 * 179.70635 * 18 17 16 20 20 N 7.93095 * 44.28437 * 136.82801 * 2 1 3 21 21 C 1.39507 * 119.96145 * 359.72642 * 18 17 16 22 22 N 1.32043 * 119.97115 * 0.02562 * 21 18 17 23 23 H 1.08993 * 109.47639 * 299.99905 * 1 2 3 24 24 H 1.09004 * 109.47135 * 60.00050 * 1 2 3 25 25 H 1.09002 * 109.47179 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47493 * 240.00117 * 2 1 3 27 27 H 1.08996 * 109.46751 * 299.99968 * 3 2 1 28 28 H 1.09002 * 109.46824 * 59.99708 * 3 2 1 29 29 H 1.09001 * 109.47241 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47398 * 185.00327 * 4 2 1 31 31 H 1.09001 * 109.47194 * 305.00507 * 4 2 1 32 32 H 1.08998 * 109.46888 * 209.99779 * 6 5 4 33 33 H 1.08994 * 109.47490 * 329.99842 * 6 5 4 34 34 H 0.97000 * 119.99433 * 179.97438 * 10 9 7 35 35 H 1.07995 * 119.98241 * 0.02562 * 16 15 5 36 36 H 1.08005 * 120.01569 * 179.97438 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6524 -2.1328 1.1906 6 6 2.5428 -3.1112 0.5612 7 6 3.4833 -3.6731 1.5960 8 1 3.4240 -3.3349 2.6200 9 6 4.4195 -4.6190 1.2355 10 7 4.4913 -5.0313 -0.0113 11 14 5.5857 -5.3150 2.5181 12 1 5.3014 -4.6920 3.8357 13 1 5.3954 -6.7847 2.6145 14 1 6.9871 -5.0222 2.1236 15 6 0.4438 -2.5425 1.7303 16 6 -0.4490 -1.5967 2.2418 17 7 -1.5988 -1.9842 2.7499 18 6 -1.9082 -3.2803 2.7867 19 6 -3.1571 -3.7032 3.3455 20 7 -4.1477 -4.0386 3.7887 21 6 -1.0145 -4.2245 2.2810 22 7 0.1372 -3.8336 1.7668 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6766 1.9563 -0.8900 28 1 1.6765 1.9564 0.8900 29 1 3.1300 1.4426 0.0005 30 1 3.1263 -0.6442 1.2952 31 1 1.6053 -0.2617 2.1370 32 1 1.9498 -3.9190 0.1325 33 1 3.1180 -2.6251 -0.2267 34 1 5.1502 -5.6964 -0.2649 35 1 -0.1967 -0.5469 2.2157 36 1 -1.2641 -5.2749 2.3107 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083644838.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:05 Heat of formation + Delta-G solvation = 65.021727 kcal Electronic energy + Delta-G solvation = -19148.836302 eV Core-core repulsion = 16246.898025 eV Total energy + Delta-G solvation = -2901.938277 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.133 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.13635 -39.07417 -37.50363 -36.03540 -34.95259 -34.25214 -32.01807 -29.46892 -28.05993 -27.27600 -25.97961 -24.96703 -23.13209 -21.17602 -20.24050 -18.71145 -18.61716 -18.30043 -16.67945 -16.40366 -16.16710 -15.52043 -15.41530 -15.19631 -14.96523 -14.38015 -14.13612 -14.03176 -13.86674 -13.78435 -13.30107 -13.03544 -12.77351 -12.67308 -12.60906 -12.52341 -12.31323 -12.17278 -11.97156 -11.84599 -11.57427 -11.45977 -10.77488 -10.58441 -10.00137 -8.63215 -8.10873 -6.29298 -0.31451 0.24479 1.39791 1.43102 1.52040 1.52632 1.90840 1.99652 2.42426 2.64592 2.97588 3.14457 3.45440 3.48618 3.71240 3.95850 4.02522 4.13614 4.25433 4.49055 4.57796 4.73948 4.82738 4.92266 4.97949 5.08009 5.11699 5.16919 5.32055 5.33841 5.46454 5.53031 5.70180 5.95542 6.10487 6.20058 6.38235 6.59218 6.79896 7.04256 7.39997 8.89389 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.013841 B = 0.007336 C = 0.005147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.476079 B = 3815.629231 C = 5438.956401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C -0.138 4.138 4 C 0.115 3.885 5 N -0.560 5.560 6 C 0.267 3.733 7 C -0.528 4.528 8 H 0.051 0.949 9 C 0.016 3.984 10 N -0.925 5.925 11 Si 0.956 3.044 12 H -0.270 1.270 13 H -0.284 1.284 14 H -0.277 1.277 15 C 0.383 3.617 16 C -0.001 4.001 17 N -0.379 5.379 18 C 0.014 3.986 19 C 0.310 3.690 20 N -0.447 5.447 21 C 0.176 3.824 22 N -0.527 5.527 23 H 0.078 0.922 24 H 0.064 0.936 25 H 0.032 0.968 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.019 0.981 33 H 0.021 0.979 34 H 0.265 0.735 35 H 0.203 0.797 36 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.280 10.981 1.033 12.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.130 4.130 3 C -0.195 4.195 4 C -0.008 4.008 5 N -0.263 5.263 6 C 0.146 3.854 7 C -0.567 4.567 8 H 0.069 0.931 9 C -0.183 4.183 10 N -0.565 5.565 11 Si 0.782 3.218 12 H -0.195 1.195 13 H -0.210 1.210 14 H -0.202 1.202 15 C 0.139 3.861 16 C -0.177 4.177 17 N -0.093 5.093 18 C -0.125 4.125 19 C -0.006 4.006 20 N -0.125 5.125 21 C 0.010 3.990 22 N -0.248 5.248 23 H 0.096 0.904 24 H 0.083 0.917 25 H 0.051 0.949 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.101 0.899 31 H 0.117 0.883 32 H 0.037 0.963 33 H 0.039 0.961 34 H 0.074 0.926 35 H 0.219 0.781 36 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -6.457 10.418 1.486 12.346 hybrid contribution 1.258 -0.833 0.096 1.512 sum -5.199 9.584 1.582 11.018 Atomic orbital electron populations 1.22087 0.94560 1.00692 1.03040 1.21542 0.96600 0.97436 0.97466 1.21729 1.01173 0.93482 1.03152 1.21992 1.01461 0.77942 0.99373 1.47256 1.14878 1.09293 1.54872 1.18892 0.87599 0.86784 0.92113 1.21622 1.16531 1.23036 0.95532 0.93078 1.25635 0.99001 0.96608 0.97040 1.70030 1.36515 1.31843 1.18154 0.85537 0.78801 0.78052 0.79400 1.19478 1.20969 1.20211 1.19964 0.87704 0.90216 0.88243 1.23656 0.89881 1.01507 1.02644 1.68015 1.16803 1.15568 1.08963 1.16785 0.92621 0.91293 1.11824 1.24645 0.91316 0.92586 0.92016 1.81211 1.11284 1.09024 1.11015 1.23781 0.86106 1.01597 0.87524 1.68378 1.18882 1.16251 1.21328 0.90355 0.91705 0.94939 0.92784 0.91602 0.90753 0.92536 0.89914 0.88282 0.96285 0.96099 0.92601 0.78109 0.78919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 7.56 71.98 0.54 -2.45 16 2 C -0.11 -2.46 3.13 -10.79 -0.03 -2.49 16 3 C -0.14 -2.22 9.19 71.98 0.66 -1.56 16 4 C 0.11 3.03 4.95 86.38 0.43 3.46 16 5 N -0.56 -20.12 2.43 -707.73 -1.72 -21.84 16 6 C 0.27 12.50 5.14 85.63 0.44 12.95 16 7 C -0.53 -27.26 9.39 25.60 0.24 -27.02 16 8 H 0.05 2.66 7.81 -2.91 -0.02 2.63 16 9 C 0.02 0.87 5.46 84.65 0.46 1.34 16 10 N -0.93 -51.96 13.29 21.45 0.28 -51.67 16 11 Si 0.96 42.26 29.54 68.60 2.03 44.28 16 12 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 13 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 14 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 15 C 0.38 13.16 6.35 133.26 0.85 14.01 16 16 C 0.00 -0.03 8.16 85.10 0.69 0.67 16 17 N -0.38 -11.09 10.41 -187.84 -1.96 -13.05 16 18 C 0.01 0.42 6.58 40.47 0.27 0.69 16 19 C 0.31 9.05 15.56 88.33 1.37 10.43 16 20 N -0.45 -14.10 18.54 19.00 0.35 -13.75 16 21 C 0.18 5.30 10.92 84.97 0.93 6.23 16 22 N -0.53 -19.75 9.31 -191.65 -1.78 -21.54 16 23 H 0.08 1.28 6.40 -2.39 -0.02 1.26 16 24 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 25 H 0.03 0.83 5.72 -2.39 -0.01 0.81 16 26 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.08 2.35 8.07 -2.39 -0.02 2.33 16 31 H 0.10 2.05 6.38 -2.39 -0.02 2.04 16 32 H 0.02 1.01 7.46 -2.39 -0.02 0.99 16 33 H 0.02 1.03 8.07 -2.39 -0.02 1.01 16 34 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 35 H 0.20 4.27 3.96 -2.91 -0.01 4.26 16 36 H 0.19 4.57 8.06 -2.91 -0.02 4.55 16 Total: -1.00 -61.78 308.18 5.15 -56.63 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: 1.09 Total: 4.71 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: 6.85 Total: 16.24 kcal Atomic # 7 Polarization: -117.03 SS G_CDS: -4.82 Total: -121.85 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.28 kcal Total: -61.78 5.15 -56.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083644838.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.648 kcal (2) G-P(sol) polarization free energy of solvation -61.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds