Wall clock time and date at job start Mon Mar 30 2020 04:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99988 * 2 1 4 4 H 1.48501 * 109.47073 * 240.00165 * 3 2 1 5 5 H 1.48504 * 109.47340 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47150 * 119.99843 * 3 2 1 7 7 C 1.37877 * 119.99868 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00170 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99858 * 0.02562 * 7 2 1 10 10 C 1.53011 * 109.46881 * 185.72079 * 9 7 2 11 11 H 1.08998 * 109.99446 * 315.83266 * 10 9 7 12 12 C 1.54327 * 109.88113 * 194.74258 * 10 9 7 13 13 C 1.55147 * 102.93983 * 218.39030 * 12 10 9 14 14 C 1.54688 * 101.68218 * 35.33371 * 13 12 10 15 15 N 1.47020 * 109.88034 * 76.93412 * 10 9 7 16 16 C 1.34776 * 125.64741 * 298.31670 * 15 10 9 17 17 O 1.21556 * 119.99944 * 2.77919 * 16 15 10 18 18 C 1.47835 * 119.99874 * 182.77652 * 16 15 10 19 19 C 1.40031 * 120.56139 * 157.69597 * 18 16 15 20 20 C 1.38352 * 118.28941 * 180.29702 * 19 18 16 21 21 C 1.38345 * 119.30674 * 359.97438 * 20 19 18 22 22 N 1.31934 * 121.07759 * 0.02562 * 21 20 19 23 23 C 1.31695 * 121.87947 * 359.97438 * 22 21 20 24 24 H 0.97001 * 120.00143 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47439 * 65.72336 * 9 7 2 26 26 H 1.09004 * 109.47394 * 305.71498 * 9 7 2 27 27 H 1.09004 * 110.71657 * 336.74906 * 12 10 9 28 28 H 1.08994 * 110.72015 * 99.84585 * 12 10 9 29 29 H 1.09003 * 111.01041 * 153.57500 * 13 12 10 30 30 H 1.09003 * 111.00637 * 277.38869 * 13 12 10 31 31 H 1.08997 * 110.39712 * 204.36370 * 14 13 12 32 32 H 1.08999 * 110.23764 * 82.11157 * 14 13 12 33 33 H 1.07997 * 120.84942 * 0.24938 * 19 18 16 34 34 H 1.07999 * 120.34335 * 179.97438 * 20 19 18 35 35 H 1.07994 * 119.46351 * 180.02562 * 21 20 19 36 36 H 1.07998 * 119.71507 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2390 -3.6585 0.1450 11 1 3.0989 -3.4986 -0.5054 12 6 1.5451 -4.9879 -0.2198 13 6 2.1354 -5.9829 0.8139 14 6 2.2805 -5.0852 2.0653 15 7 2.6821 -3.7665 1.5426 16 6 3.3502 -2.8193 2.2302 17 8 3.5909 -1.7471 1.7106 18 6 3.7902 -3.0842 3.6165 19 6 4.8455 -2.3564 4.1800 20 6 5.2227 -2.6474 5.4789 21 6 4.5515 -3.6380 6.1732 22 7 3.5604 -4.3077 5.6165 23 6 3.1648 -4.0676 4.3835 24 1 -0.4850 0.8400 -0.0004 25 1 0.7037 -2.6028 -0.9364 26 1 0.5494 -2.5137 0.8347 27 1 0.4648 -4.9042 -0.1012 28 1 1.7979 -5.2885 -1.2365 29 1 1.4470 -6.8073 1.0001 30 1 3.1071 -6.3542 0.4882 31 1 3.0493 -5.4803 2.7292 32 1 1.3273 -5.0113 2.5889 33 1 5.3524 -1.5883 3.6148 34 1 6.0327 -2.1068 5.9459 35 1 4.8436 -3.8669 7.1874 36 1 2.3497 -4.6373 3.9623 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084507717.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:25 Heat of formation + Delta-G solvation = 24.549947 kcal Electronic energy + Delta-G solvation = -19703.941397 eV Core-core repulsion = 16767.955381 eV Total energy + Delta-G solvation = -2935.986016 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.47865 -38.97158 -36.74295 -33.15734 -32.34064 -32.01107 -30.57569 -29.91034 -26.39641 -24.68961 -23.53503 -22.93947 -21.57234 -20.71383 -18.69110 -17.27106 -16.81800 -16.29431 -15.99675 -15.67140 -14.75406 -14.29847 -14.00362 -13.85949 -13.35879 -13.21268 -12.93439 -12.91653 -12.46937 -12.17065 -11.77415 -11.44711 -11.33800 -11.02230 -10.78994 -10.49823 -10.36736 -10.12846 -9.82726 -9.81049 -9.51532 -9.06090 -8.99206 -8.30848 -8.15037 -7.79745 -5.76023 -3.67440 0.85982 1.26902 3.37252 3.50945 3.52221 3.53514 3.61587 4.05221 4.36995 4.70485 4.75207 4.85312 4.88870 5.00638 5.06085 5.15822 5.23842 5.47256 5.59346 5.63095 5.67211 5.74051 5.83526 6.03411 6.10034 6.14490 6.20252 6.30359 6.60382 6.66066 6.86002 6.93163 7.75035 7.80304 7.89379 8.22119 8.25518 8.60409 8.96595 9.42817 9.91485 11.36715 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.016836 B = 0.008208 C = 0.005961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.727092 B = 3410.346685 C = 4696.367428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.048 3.952 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.295 1.295 6 H -0.277 1.277 7 C -0.483 4.483 8 H 0.082 0.918 9 C 0.014 3.986 10 C 0.142 3.858 11 H 0.065 0.935 12 C -0.130 4.130 13 C -0.134 4.134 14 C 0.087 3.913 15 N -0.602 5.602 16 C 0.555 3.445 17 O -0.470 6.470 18 C -0.164 4.164 19 C -0.026 4.026 20 C -0.181 4.181 21 C 0.104 3.896 22 N -0.491 5.491 23 C 0.106 3.894 24 H 0.254 0.746 25 H 0.021 0.979 26 H 0.022 0.978 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.144 0.856 34 H 0.138 0.862 35 H 0.156 0.844 36 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.774 -12.312 8.280 16.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.150 4.150 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.221 1.221 6 H -0.203 1.203 7 C -0.521 4.521 8 H 0.100 0.900 9 C -0.024 4.024 10 C 0.040 3.960 11 H 0.083 0.917 12 C -0.168 4.168 13 C -0.172 4.172 14 C -0.036 4.036 15 N -0.338 5.338 16 C 0.341 3.659 17 O -0.342 6.342 18 C -0.169 4.169 19 C -0.052 4.052 20 C -0.201 4.201 21 C -0.052 4.052 22 N -0.200 5.200 23 C -0.051 4.051 24 H 0.064 0.936 25 H 0.039 0.961 26 H 0.040 0.960 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.162 0.838 34 H 0.156 0.844 35 H 0.173 0.827 36 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 7.395 -12.155 8.503 16.575 hybrid contribution 0.726 1.672 -0.279 1.844 sum 8.121 -10.483 8.225 15.604 Atomic orbital electron populations 1.69975 1.06008 1.26054 1.53456 1.24935 0.94602 0.99058 0.96424 0.86659 0.79425 0.83385 0.78505 1.20728 1.22079 1.20311 1.21662 0.94376 0.89840 1.46227 0.89987 1.19509 0.93635 0.91942 0.97286 1.21960 0.97983 0.95767 0.80309 0.91676 1.22770 1.00915 0.94392 0.98717 1.22734 1.01481 0.97477 0.95464 1.22606 0.99574 0.84347 0.97067 1.48271 1.56438 1.14934 1.14171 1.17569 0.79975 0.84009 0.84335 1.91003 1.52991 1.22144 1.68098 1.21342 0.99274 0.99206 0.97126 1.21744 0.93333 0.95787 0.94384 1.22099 1.02364 1.00239 0.95380 1.22896 0.91024 0.91605 0.99725 1.67735 1.13627 1.26912 1.11681 1.23883 0.98043 0.93738 0.89407 0.93622 0.96113 0.95985 0.90556 0.90716 0.90350 0.91049 0.90696 0.91306 0.83774 0.84430 0.82722 0.80884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.79 13.29 55.43 0.74 -28.05 16 2 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 3 Si 0.89 23.89 29.54 -169.99 -5.02 18.87 16 4 H -0.28 -7.36 7.11 56.52 0.40 -6.96 16 5 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16 6 H -0.28 -7.51 7.11 56.52 0.40 -7.11 16 7 C -0.48 -14.17 6.81 -34.44 -0.23 -14.41 16 8 H 0.08 2.46 5.51 -52.49 -0.29 2.17 16 9 C 0.01 0.36 4.42 -27.88 -0.12 0.23 16 10 C 0.14 2.85 3.04 -66.95 -0.20 2.65 16 11 H 0.07 1.38 8.04 -51.93 -0.42 0.96 16 12 C -0.13 -1.95 6.44 -24.90 -0.16 -2.11 16 13 C -0.13 -1.58 7.07 -24.71 -0.17 -1.76 16 14 C 0.09 1.19 4.99 -2.65 -0.01 1.18 16 15 N -0.60 -11.28 3.07 -164.26 -0.50 -11.78 16 16 C 0.55 11.48 7.51 -12.33 -0.09 11.39 16 17 O -0.47 -11.86 12.32 5.32 0.07 -11.79 16 18 C -0.16 -2.77 5.78 -104.82 -0.61 -3.38 16 19 C -0.03 -0.39 9.72 -38.87 -0.38 -0.76 16 20 C -0.18 -2.11 10.10 -39.50 -0.40 -2.51 16 21 C 0.10 1.22 11.17 -17.47 -0.20 1.03 16 22 N -0.49 -6.91 10.35 -12.91 -0.13 -7.05 16 23 C 0.11 1.58 9.20 -17.13 -0.16 1.42 16 24 H 0.25 7.70 8.31 -40.82 -0.34 7.36 16 25 H 0.02 0.56 8.07 -51.93 -0.42 0.14 16 26 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.08 1.17 7.85 -51.93 -0.41 0.77 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.89 5.96 -51.93 -0.31 0.58 16 32 H 0.07 0.89 7.37 -51.93 -0.38 0.51 16 33 H 0.14 2.14 7.89 -52.49 -0.41 1.72 16 34 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 35 H 0.16 1.27 8.06 -52.49 -0.42 0.84 16 36 H 0.17 2.32 4.15 -52.49 -0.22 2.10 16 LS Contribution 293.40 15.07 4.42 4.42 Total: -1.00 -35.33 293.40 -7.80 -43.13 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: -4.53 Total: -2.08 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -2.83 Total: -5.67 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: 0.10 Total: -46.88 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.07 Total: -11.79 kcal Atomic # 14 Polarization: 23.89 SS G_CDS: -5.02 Total: 18.87 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -35.33 -7.80 -43.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084507717.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.679 kcal (2) G-P(sol) polarization free energy of solvation -35.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds