Wall clock time and date at job start Mon Mar 30 2020 04:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99988 * 2 1 4 4 H 1.48501 * 109.47073 * 240.00165 * 3 2 1 5 5 H 1.48504 * 109.47340 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47150 * 119.99843 * 3 2 1 7 7 C 1.37877 * 119.99868 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00170 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99858 * 0.02562 * 7 2 1 10 10 C 1.53011 * 109.46881 * 185.72079 * 9 7 2 11 11 H 1.08998 * 109.99446 * 315.83266 * 10 9 7 12 12 C 1.54327 * 109.88113 * 194.74258 * 10 9 7 13 13 C 1.55147 * 102.93983 * 218.39030 * 12 10 9 14 14 C 1.54688 * 101.68218 * 35.33371 * 13 12 10 15 15 N 1.47020 * 109.88034 * 76.93412 * 10 9 7 16 16 C 1.34776 * 125.64741 * 298.31670 * 15 10 9 17 17 O 1.21556 * 119.99944 * 2.77919 * 16 15 10 18 18 C 1.47835 * 119.99874 * 182.77652 * 16 15 10 19 19 C 1.40031 * 120.56139 * 157.69597 * 18 16 15 20 20 C 1.38352 * 118.28941 * 180.29702 * 19 18 16 21 21 C 1.38345 * 119.30674 * 359.97438 * 20 19 18 22 22 N 1.31934 * 121.07759 * 0.02562 * 21 20 19 23 23 C 1.31695 * 121.87947 * 359.97438 * 22 21 20 24 24 H 0.97001 * 120.00143 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47439 * 65.72336 * 9 7 2 26 26 H 1.09004 * 109.47394 * 305.71498 * 9 7 2 27 27 H 1.09004 * 110.71657 * 336.74906 * 12 10 9 28 28 H 1.08994 * 110.72015 * 99.84585 * 12 10 9 29 29 H 1.09003 * 111.01041 * 153.57500 * 13 12 10 30 30 H 1.09003 * 111.00637 * 277.38869 * 13 12 10 31 31 H 1.08997 * 110.39712 * 204.36370 * 14 13 12 32 32 H 1.08999 * 110.23764 * 82.11157 * 14 13 12 33 33 H 1.07997 * 120.84942 * 0.24938 * 19 18 16 34 34 H 1.07999 * 120.34335 * 179.97438 * 20 19 18 35 35 H 1.07994 * 119.46351 * 180.02562 * 21 20 19 36 36 H 1.07998 * 119.71507 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2390 -3.6585 0.1450 11 1 3.0989 -3.4986 -0.5054 12 6 1.5451 -4.9879 -0.2198 13 6 2.1354 -5.9829 0.8139 14 6 2.2805 -5.0852 2.0653 15 7 2.6821 -3.7665 1.5426 16 6 3.3502 -2.8193 2.2302 17 8 3.5909 -1.7471 1.7106 18 6 3.7902 -3.0842 3.6165 19 6 4.8455 -2.3564 4.1800 20 6 5.2227 -2.6474 5.4789 21 6 4.5515 -3.6380 6.1732 22 7 3.5604 -4.3077 5.6165 23 6 3.1648 -4.0676 4.3835 24 1 -0.4850 0.8400 -0.0004 25 1 0.7037 -2.6028 -0.9364 26 1 0.5494 -2.5137 0.8347 27 1 0.4648 -4.9042 -0.1012 28 1 1.7979 -5.2885 -1.2365 29 1 1.4470 -6.8073 1.0001 30 1 3.1071 -6.3542 0.4882 31 1 3.0493 -5.4803 2.7292 32 1 1.3273 -5.0113 2.5889 33 1 5.3524 -1.5883 3.6148 34 1 6.0327 -2.1068 5.9459 35 1 4.8436 -3.8669 7.1874 36 1 2.3497 -4.6373 3.9623 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084507717.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:24 Heat of formation + Delta-G solvation = 0.223618 kcal Electronic energy + Delta-G solvation = -19704.996266 eV Core-core repulsion = 16767.955381 eV Total energy + Delta-G solvation = -2937.040885 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.73122 -40.26448 -38.25060 -35.21268 -33.57552 -33.36104 -32.03029 -31.39244 -28.15799 -26.02663 -24.89959 -24.38412 -23.08005 -21.95813 -20.20422 -18.86636 -18.05729 -17.81964 -17.41622 -17.04038 -16.63279 -15.78830 -15.52322 -14.93966 -14.68639 -14.59599 -14.34258 -14.11912 -13.97737 -13.69348 -13.40677 -13.11721 -13.08071 -12.84511 -12.38283 -12.37564 -11.92967 -11.60532 -11.48554 -10.98366 -10.93325 -10.75526 -10.49654 -10.17085 -10.07452 -9.40969 -8.09993 -6.05447 -0.26303 0.19557 1.30539 1.35649 1.44625 2.00358 2.13159 2.47126 2.85242 3.25713 3.34076 3.58225 3.76997 3.86281 3.89610 3.98829 4.08367 4.15750 4.37693 4.46933 4.53081 4.60414 4.72979 4.88867 4.99029 5.03617 5.08946 5.12445 5.17003 5.24556 5.38782 5.60611 5.63574 5.83499 5.92925 6.36536 6.73692 6.84667 7.02558 7.46068 7.57027 9.02626 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.016836 B = 0.008208 C = 0.005961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.727092 B = 3410.346685 C = 4696.367428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.010 4.010 3 Si 0.948 3.052 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.483 4.483 8 H 0.072 0.928 9 C 0.021 3.979 10 C 0.141 3.859 11 H 0.048 0.952 12 C -0.123 4.123 13 C -0.116 4.116 14 C 0.079 3.921 15 N -0.606 5.606 16 C 0.545 3.455 17 O -0.536 6.536 18 C -0.192 4.192 19 C -0.042 4.042 20 C -0.166 4.166 21 C 0.114 3.886 22 N -0.502 5.502 23 C 0.109 3.891 24 H 0.254 0.746 25 H 0.004 0.996 26 H -0.010 1.010 27 H 0.071 0.929 28 H 0.094 0.906 29 H 0.116 0.884 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.133 0.867 34 H 0.177 0.823 35 H 0.200 0.800 36 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.018 -14.414 10.250 19.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.204 4.204 3 Si 0.775 3.225 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.522 4.522 8 H 0.090 0.910 9 C -0.016 4.016 10 C 0.038 3.962 11 H 0.067 0.933 12 C -0.161 4.161 13 C -0.154 4.154 14 C -0.042 4.042 15 N -0.340 5.340 16 C 0.334 3.666 17 O -0.413 6.413 18 C -0.197 4.197 19 C -0.069 4.069 20 C -0.185 4.185 21 C -0.042 4.042 22 N -0.210 5.210 23 C -0.047 4.047 24 H 0.063 0.937 25 H 0.023 0.977 26 H 0.008 0.992 27 H 0.090 0.910 28 H 0.112 0.888 29 H 0.134 0.866 30 H 0.104 0.896 31 H 0.116 0.884 32 H 0.096 0.904 33 H 0.151 0.849 34 H 0.194 0.806 35 H 0.216 0.784 36 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 8.635 -14.312 10.476 19.726 hybrid contribution 0.406 2.277 -0.781 2.441 sum 9.040 -12.034 9.695 17.904 Atomic orbital electron populations 1.70087 1.07181 1.26639 1.55215 1.25702 0.95476 1.02410 0.96857 0.85757 0.78361 0.79980 0.78409 1.19511 1.21071 1.21072 1.21998 0.94205 0.91494 1.44474 0.90986 1.19358 0.93922 0.93409 0.94950 1.21761 0.96246 0.96549 0.81605 0.93344 1.22704 1.00189 0.92237 1.00944 1.22761 1.02940 0.97035 0.92644 1.22955 1.00616 0.82112 0.98558 1.48415 1.55343 1.16605 1.13615 1.18298 0.79073 0.83449 0.85797 1.90928 1.55919 1.24599 1.69881 1.21107 1.01419 1.01731 0.95471 1.21888 0.93266 0.95705 0.96019 1.22479 1.02671 0.99812 0.93578 1.23672 0.89301 0.90113 1.01152 1.67844 1.14634 1.27577 1.10979 1.23949 0.97999 0.93122 0.89669 0.93713 0.97741 0.99158 0.91021 0.88790 0.86615 0.89572 0.88389 0.90438 0.84877 0.80577 0.78378 0.79929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.99 13.29 21.45 0.28 -61.70 16 2 C -0.01 -0.65 5.46 84.65 0.46 -0.19 16 3 Si 0.95 50.83 29.54 68.60 2.03 52.86 16 4 H -0.27 -13.83 7.11 99.48 0.71 -13.12 16 5 H -0.29 -14.70 7.11 99.48 0.71 -13.99 16 6 H -0.28 -15.47 7.11 99.48 0.71 -14.76 16 7 C -0.48 -29.78 6.81 25.60 0.17 -29.61 16 8 H 0.07 4.57 5.51 -2.91 -0.02 4.55 16 9 C 0.02 1.16 4.42 29.85 0.13 1.29 16 10 C 0.14 5.85 3.04 45.35 0.14 5.98 16 11 H 0.05 2.14 8.04 -2.39 -0.02 2.12 16 12 C -0.12 -3.53 6.44 31.78 0.20 -3.32 16 13 C -0.12 -2.36 7.07 31.91 0.23 -2.13 16 14 C 0.08 2.00 4.99 86.78 0.43 2.43 16 15 N -0.61 -23.02 3.07 -791.86 -2.43 -25.45 16 16 C 0.55 23.46 7.51 86.78 0.65 24.11 16 17 O -0.54 -28.68 12.32 -3.89 -0.05 -28.73 16 18 C -0.19 -6.50 5.78 -19.99 -0.12 -6.61 16 19 C -0.04 -1.24 9.72 22.73 0.22 -1.02 16 20 C -0.17 -3.35 10.10 22.32 0.23 -3.12 16 21 C 0.11 2.21 11.17 84.70 0.95 3.16 16 22 N -0.50 -12.61 10.35 -194.76 -2.02 -14.63 16 23 C 0.11 3.08 9.20 85.02 0.78 3.86 16 24 H 0.25 15.88 8.31 -92.71 -0.77 15.11 16 25 H 0.00 0.25 8.07 -2.39 -0.02 0.23 16 26 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 27 H 0.07 2.14 7.85 -2.39 -0.02 2.12 16 28 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.10 2.08 5.96 -2.39 -0.01 2.06 16 32 H 0.08 1.86 7.37 -2.39 -0.02 1.84 16 33 H 0.13 4.10 7.89 -2.91 -0.02 4.08 16 34 H 0.18 2.15 8.06 -2.91 -0.02 2.13 16 35 H 0.20 2.08 8.06 -2.91 -0.02 2.06 16 36 H 0.18 4.58 4.15 -2.91 -0.01 4.57 16 Total: -1.00 -82.38 293.40 3.39 -78.99 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: 1.09 Total: 3.82 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: 4.48 Total: -5.17 kcal Atomic # 7 Polarization: -97.61 SS G_CDS: -4.16 Total: -101.77 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -0.05 Total: -28.73 kcal Atomic # 14 Polarization: 50.83 SS G_CDS: 2.03 Total: 52.86 kcal Total: -82.38 3.39 -78.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084507717.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.213 kcal (2) G-P(sol) polarization free energy of solvation -82.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds