Wall clock time and date at job start Mon Mar 30 2020 04:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35700 * 116.99962 * 2 1 4 4 C 1.38645 * 120.15076 * 359.72978 * 3 2 1 5 5 C 1.38109 * 120.09043 * 179.71916 * 4 3 2 6 6 C 1.38522 * 120.39299 * 0.55307 * 5 4 3 7 7 C 1.50695 * 119.85437 * 179.70021 * 6 5 4 8 8 N 1.46906 * 109.46983 * 270.02426 * 7 6 5 9 9 C 1.46896 * 110.99914 * 66.04436 * 8 7 6 10 10 C 1.46900 * 110.99869 * 189.99766 * 8 7 6 11 11 C 1.50697 * 109.47019 * 169.99808 * 10 8 7 12 12 H 1.08001 * 120.00117 * 359.97438 * 11 10 8 13 13 C 1.37881 * 119.99667 * 180.02562 * 11 10 8 14 14 N 1.31510 * 120.00474 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99608 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47353 * 0.02562 * 15 13 11 17 17 H 1.48513 * 109.46590 * 119.99958 * 15 13 11 18 18 H 1.48491 * 109.47422 * 239.99876 * 15 13 11 19 19 C 1.37821 * 120.29042 * 359.72172 * 6 5 4 20 20 C 1.39709 * 119.90887 * 0.02562 * 19 6 5 21 21 C 1.43197 * 120.19765 * 180.02562 * 20 19 6 22 22 N 3.53311 * 165.92269 * 179.97438 * 2 1 3 23 23 H 1.09001 * 109.47103 * 300.00229 * 1 2 3 24 24 H 1.09004 * 109.47054 * 59.99733 * 1 2 3 25 25 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 26 26 H 1.07998 * 119.95312 * 359.97327 * 4 3 2 27 27 H 1.07994 * 119.80220 * 180.27421 * 5 4 3 28 28 H 1.09001 * 109.46873 * 30.02177 * 7 6 5 29 29 H 1.08991 * 109.46938 * 150.02239 * 7 6 5 30 30 H 1.09004 * 109.47240 * 60.00076 * 9 8 7 31 31 H 1.09008 * 109.46775 * 179.97438 * 9 8 7 32 32 H 1.09002 * 109.47574 * 299.99806 * 9 8 7 33 33 H 1.09003 * 109.46980 * 290.00407 * 10 8 7 34 34 H 1.09001 * 109.46950 * 49.99868 * 10 8 7 35 35 H 0.96996 * 120.00280 * 180.02562 * 14 13 11 36 36 H 1.08000 * 120.04530 * 180.02562 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 1.2931 2.3739 -0.0057 5 6 1.9213 3.6038 0.0002 6 6 3.3042 3.6843 0.0002 7 6 3.9770 5.0327 -0.0002 8 7 4.1952 5.4707 -1.3854 9 6 2.9175 5.7174 -2.0669 10 6 5.0551 6.6608 -1.4320 11 6 5.4567 6.9348 -2.8584 12 1 5.1084 6.2891 -3.6510 13 6 6.2698 8.0091 -3.1513 14 7 6.6952 8.7944 -2.1861 15 14 6.7682 8.3483 -4.9194 16 1 6.1622 7.3258 -5.8094 17 1 6.2905 9.6968 -5.3183 18 1 8.2475 8.2927 -5.0361 19 6 4.0674 2.5367 0.0002 20 6 3.4447 1.2861 -0.0005 21 6 4.2317 0.0897 0.0000 22 7 4.8561 -0.8594 0.0004 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2145 2.3193 -0.0105 27 1 1.3309 4.5080 0.0003 28 1 3.3431 5.7553 0.5138 29 1 4.9357 4.9605 0.5133 30 1 2.3673 6.4951 -1.5370 31 1 3.1081 6.0408 -3.0903 32 1 2.3290 4.8000 -2.0790 33 1 4.5105 7.5182 -1.0366 34 1 5.9473 6.4881 -0.8300 35 1 7.2669 9.5504 -2.3922 36 1 5.1453 2.6042 0.0006 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087829047.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:08 Heat of formation + Delta-G solvation = 2.121025 kcal Electronic energy + Delta-G solvation = -18446.285820 eV Core-core repulsion = 15509.327212 eV Total energy + Delta-G solvation = -2936.958607 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.37778 -39.24625 -37.91075 -37.14229 -34.66569 -32.54892 -31.99224 -29.21192 -28.46688 -27.55661 -25.35623 -24.88840 -22.83780 -21.82579 -19.74191 -18.64757 -18.27443 -17.46814 -16.84460 -16.71237 -15.99373 -15.70901 -15.62885 -15.27882 -14.96510 -14.83179 -14.43589 -14.17705 -13.89098 -13.75197 -13.33345 -13.15941 -12.94137 -12.77628 -12.70842 -12.54790 -12.40227 -12.18218 -11.92035 -11.87542 -11.72132 -11.21846 -10.58595 -9.99534 -9.22067 -8.88458 -8.16856 -6.25936 -0.18792 0.36875 1.42650 1.44388 1.56987 1.63477 1.92021 2.23463 2.43297 2.79591 2.89609 3.16176 3.58753 3.84690 3.89894 4.09241 4.27868 4.34964 4.45013 4.48569 4.59260 4.64060 4.79202 4.81783 4.87088 4.94001 5.12156 5.17101 5.20568 5.27911 5.39350 5.59780 5.66256 5.70339 6.10527 6.27387 6.39977 6.49913 6.69856 6.91345 7.43748 8.93867 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.028616 B = 0.004076 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.239852 B = 6867.310553 C = 7204.434453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.334 6.334 3 C 0.173 3.827 4 C -0.196 4.196 5 C -0.032 4.032 6 C -0.111 4.111 7 C 0.094 3.906 8 N -0.546 5.546 9 C 0.039 3.961 10 C 0.206 3.794 11 C -0.520 4.520 12 H 0.062 0.938 13 C 0.003 3.997 14 N -0.934 5.934 15 Si 0.964 3.036 16 H -0.264 1.264 17 H -0.278 1.278 18 H -0.281 1.281 19 C -0.015 4.015 20 C -0.086 4.086 21 C 0.286 3.714 22 N -0.471 5.471 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.115 0.885 26 H 0.173 0.827 27 H 0.151 0.849 28 H 0.046 0.954 29 H 0.071 0.929 30 H 0.018 0.982 31 H 0.051 0.949 32 H 0.080 0.920 33 H -0.032 1.032 34 H 0.005 0.995 35 H 0.263 0.737 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.617 -11.855 5.762 21.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.247 6.247 3 C 0.124 3.876 4 C -0.214 4.214 5 C -0.051 4.051 6 C -0.112 4.112 7 C -0.034 4.034 8 N -0.271 5.271 9 C -0.110 4.110 10 C 0.080 3.920 11 C -0.559 4.559 12 H 0.080 0.920 13 C -0.195 4.195 14 N -0.575 5.575 15 Si 0.790 3.210 16 H -0.188 1.188 17 H -0.204 1.204 18 H -0.207 1.207 19 C -0.036 4.036 20 C -0.090 4.090 21 C -0.028 4.028 22 N -0.148 5.148 23 H 0.096 0.904 24 H 0.093 0.907 25 H 0.133 0.867 26 H 0.190 0.810 27 H 0.169 0.831 28 H 0.064 0.936 29 H 0.090 0.910 30 H 0.037 0.963 31 H 0.070 0.930 32 H 0.099 0.901 33 H -0.015 1.015 34 H 0.024 0.976 35 H 0.072 0.928 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -15.240 -13.756 5.544 21.266 hybrid contribution 0.030 1.603 -0.314 1.634 sum -15.210 -12.153 5.229 20.159 Atomic orbital electron populations 1.23500 0.75261 1.05868 1.03359 1.86062 1.24542 1.26551 1.87569 1.18986 0.89819 0.85731 0.93051 1.21389 1.01749 0.90063 1.08239 1.21364 0.93186 0.98593 0.91983 1.19551 0.94112 0.93883 1.03681 1.20992 0.99745 0.92582 0.90052 1.62037 1.15196 1.35404 1.14426 1.22267 0.90005 0.99716 0.98962 1.19403 0.90948 0.85446 0.96213 1.21522 1.29612 1.10839 0.93876 0.91996 1.25846 0.96123 0.95908 1.01651 1.70074 1.36069 1.17500 1.33862 0.85405 0.77869 0.78075 0.79698 1.18844 1.20400 1.20726 1.20890 1.00558 0.89030 0.93080 1.15328 0.88956 0.87513 1.17204 1.25688 0.92390 0.92564 0.92123 1.81177 1.10275 1.11723 1.11586 0.90370 0.90678 0.86723 0.80959 0.83094 0.93600 0.91002 0.96343 0.93033 0.90121 1.01453 0.97647 0.92775 0.84734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.81 113.37 1.11 1.23 16 2 O -0.33 -6.46 9.93 -90.20 -0.90 -7.35 16 3 C 0.17 3.54 6.69 22.84 0.15 3.69 16 4 C -0.20 -3.02 9.03 22.34 0.20 -2.81 16 5 C -0.03 -0.59 7.94 22.31 0.18 -0.42 16 6 C -0.11 -2.77 4.88 -19.90 -0.10 -2.87 16 7 C 0.09 2.94 5.11 85.55 0.44 3.37 16 8 N -0.55 -21.87 4.74 -931.65 -4.42 -26.29 16 9 C 0.04 1.34 8.95 127.69 1.14 2.48 16 10 C 0.21 10.53 4.72 85.56 0.40 10.93 16 11 C -0.52 -28.83 8.46 25.60 0.22 -28.61 16 12 H 0.06 3.39 7.12 -2.91 -0.02 3.37 16 13 C 0.00 0.15 5.46 84.66 0.46 0.61 16 14 N -0.93 -55.36 13.29 21.45 0.28 -55.08 16 15 Si 0.96 43.86 29.54 68.60 2.03 45.88 16 16 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 17 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 18 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 19 C -0.01 -0.37 9.40 22.53 0.21 -0.16 16 20 C -0.09 -2.14 5.75 -21.21 -0.12 -2.26 16 21 C 0.29 8.43 14.87 88.33 1.31 9.75 16 22 N -0.47 -15.74 18.54 19.00 0.35 -15.39 16 23 H 0.08 0.42 7.67 -2.39 -0.02 0.40 16 24 H 0.07 0.47 7.65 -2.38 -0.02 0.45 16 25 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.17 1.38 6.30 -2.91 -0.02 1.36 16 27 H 0.15 2.22 8.02 -2.91 -0.02 2.20 16 28 H 0.05 1.34 8.06 -2.39 -0.02 1.32 16 29 H 0.07 2.33 7.87 -2.39 -0.02 2.31 16 30 H 0.02 0.60 8.14 -2.38 -0.02 0.58 16 31 H 0.05 2.01 6.76 -2.38 -0.02 2.00 16 32 H 0.08 2.24 6.16 -2.39 -0.01 2.22 16 33 H -0.03 -1.77 8.12 -2.39 -0.02 -1.79 16 34 H 0.01 0.30 7.93 -2.39 -0.02 0.28 16 35 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 36 H 0.13 3.52 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -68.90 312.74 4.04 -64.86 By element: Atomic # 1 Polarization: -2.64 SS G_CDS: 1.08 Total: -1.56 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: 5.61 Total: -5.07 kcal Atomic # 7 Polarization: -92.97 SS G_CDS: -3.78 Total: -96.76 kcal Atomic # 8 Polarization: -6.46 SS G_CDS: -0.90 Total: -7.35 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Total: -68.90 4.04 -64.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087829047.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.977 kcal (2) G-P(sol) polarization free energy of solvation -68.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds