Wall clock time and date at job start Mon Mar 30 2020 04:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00176 * 2 1 4 4 H 1.48504 * 109.47496 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47213 * 299.99470 * 3 2 1 6 6 H 1.48498 * 109.47671 * 59.99133 * 3 2 1 7 7 C 1.37877 * 119.99983 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00102 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99909 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.47324 * 179.97438 * 9 7 2 11 11 C 1.34771 * 119.99793 * 265.91027 * 10 9 7 12 12 O 1.21291 * 119.99906 * 186.49000 * 11 10 9 13 13 C 1.50695 * 120.00338 * 6.48793 * 11 10 9 14 14 N 1.46903 * 115.54897 * 34.92800 * 13 11 10 15 15 C 1.52997 * 117.50019 * 249.25741 * 13 11 10 16 16 C 1.53004 * 117.50079 * 180.59664 * 13 11 10 17 17 C 1.39921 * 119.99866 * 85.91223 * 10 9 7 18 18 C 1.38877 * 120.07094 * 7.01776 * 17 10 9 19 19 C 1.38116 * 119.92876 * 180.30359 * 18 17 10 20 20 C 1.38283 * 120.06695 * 359.46215 * 19 18 17 21 21 C 1.38282 * 120.14361 * 0.51746 * 20 19 18 22 22 C 1.38114 * 120.07106 * 359.76172 * 21 20 19 23 23 H 0.97006 * 119.99458 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.47388 * 59.99283 * 9 7 2 25 25 H 1.09000 * 109.47248 * 299.99456 * 9 7 2 26 26 H 1.00900 * 110.99709 * 279.91664 * 14 13 11 27 27 H 1.00901 * 111.00160 * 43.86558 * 14 13 11 28 28 H 1.08998 * 117.49855 * 359.97438 * 15 13 11 29 29 H 1.09004 * 117.49821 * 145.02317 * 15 13 11 30 30 H 1.09005 * 117.49737 * 214.98580 * 16 13 11 31 31 H 1.09003 * 117.49454 * 359.97438 * 16 13 11 32 32 H 1.07999 * 120.03726 * 0.02588 * 18 17 10 33 33 H 1.07989 * 119.96709 * 179.70222 * 19 18 17 34 34 H 1.08004 * 119.92726 * 180.23153 * 20 19 18 35 35 H 1.07996 * 119.96634 * 179.73946 * 21 20 19 36 36 H 1.07990 * 120.03677 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8903 2.3966 1.2123 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.5775 -4.1790 -1.1637 12 8 3.2717 -5.1736 -1.1586 13 6 2.1339 -3.5765 -2.4718 14 7 2.0362 -2.1109 -2.4935 15 6 1.1213 -4.3644 -3.3051 16 6 2.5806 -4.2738 -3.7583 17 6 2.7232 -4.0883 1.2092 18 6 2.2316 -3.6072 2.4157 19 6 2.7517 -4.0741 3.6070 20 6 3.7530 -5.0278 3.5993 21 6 4.2443 -5.5093 2.3997 22 6 3.7325 -5.0422 1.2049 23 1 -0.4850 0.8401 -0.0004 24 1 0.6245 -2.5570 -0.8896 25 1 0.6241 -2.5567 0.8903 26 1 1.1753 -1.7996 -2.0692 27 1 2.8344 -1.6885 -2.0434 28 1 0.7762 -5.3188 -2.9074 29 1 0.3828 -3.7953 -3.8699 30 1 2.8016 -3.6451 -4.6209 31 1 3.1956 -5.1682 -3.6585 32 1 1.4467 -2.8654 2.4224 33 1 2.3732 -3.6969 4.5454 34 1 4.1554 -5.3941 4.5323 35 1 5.0292 -6.2510 2.3971 36 1 4.1169 -5.4183 0.2684 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088129710.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:38 Heat of formation + Delta-G solvation = 45.206694 kcal Electronic energy + Delta-G solvation = -19895.887021 eV Core-core repulsion = 16960.796748 eV Total energy + Delta-G solvation = -2935.090273 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.46325 -38.21747 -36.19755 -35.54541 -32.89925 -30.61568 -30.36685 -29.06242 -27.44449 -23.82590 -23.43747 -22.23641 -21.85968 -20.69030 -18.59836 -17.07614 -16.73327 -16.62402 -15.75574 -15.06023 -14.77408 -14.34947 -14.25672 -13.98633 -13.51387 -13.35076 -12.81150 -12.53679 -12.51034 -12.18873 -11.53680 -11.48582 -11.20045 -11.13125 -10.91716 -10.62376 -10.43587 -10.36465 -10.24386 -9.79243 -9.29704 -9.18440 -8.77135 -8.38733 -7.76378 -7.25071 -6.39708 -4.49354 1.80718 1.96504 3.01056 3.13369 3.23285 3.27086 3.52249 4.16924 4.22954 4.48169 4.85039 4.92978 4.96371 5.33244 5.42118 5.46957 5.61574 5.69240 5.92541 5.99411 6.02799 6.09534 6.16904 6.22414 6.46135 6.49092 6.65526 6.80685 6.93296 7.00851 7.08746 7.20812 7.51864 7.71431 7.73934 7.94616 8.04613 8.31249 8.53239 8.68971 9.18268 10.64996 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.013921 B = 0.010048 C = 0.006492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.895827 B = 2785.850289 C = 4312.003262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.074 3.926 3 Si 0.900 3.100 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.282 1.282 7 C -0.550 4.550 8 H 0.066 0.934 9 C 0.219 3.781 10 N -0.533 5.533 11 C 0.522 3.478 12 O -0.542 6.542 13 C 0.021 3.979 14 N -0.804 5.804 15 C -0.151 4.151 16 C -0.135 4.135 17 C 0.172 3.828 18 C -0.146 4.146 19 C -0.103 4.103 20 C -0.162 4.162 21 C -0.107 4.107 22 C -0.175 4.175 23 H 0.269 0.731 24 H 0.051 0.949 25 H 0.046 0.954 26 H 0.371 0.629 27 H 0.359 0.641 28 H 0.093 0.907 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.135 0.865 33 H 0.117 0.883 34 H 0.111 0.889 35 H 0.114 0.886 36 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.404 -5.981 -0.003 6.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.132 4.132 3 Si 0.727 3.273 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.208 1.208 7 C -0.588 4.588 8 H 0.084 0.916 9 C 0.099 3.901 10 N -0.252 5.252 11 C 0.311 3.689 12 O -0.422 6.422 13 C -0.077 4.077 14 N -0.345 5.345 15 C -0.189 4.189 16 C -0.173 4.173 17 C 0.076 3.924 18 C -0.166 4.166 19 C -0.122 4.122 20 C -0.181 4.181 21 C -0.126 4.126 22 C -0.195 4.195 23 H 0.079 0.921 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.194 0.806 27 H 0.176 0.824 28 H 0.111 0.889 29 H 0.124 0.876 30 H 0.122 0.878 31 H 0.119 0.881 32 H 0.152 0.848 33 H 0.135 0.865 34 H 0.129 0.871 35 H 0.132 0.868 36 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 2.527 -6.353 -0.860 6.892 hybrid contribution 0.307 1.140 1.372 1.810 sum 2.834 -5.213 0.512 5.955 Atomic orbital electron populations 1.69913 1.05986 1.27856 1.47995 1.24898 0.94883 0.99371 0.94032 0.86388 0.80206 0.82817 0.77909 1.19509 1.20473 1.20805 1.21379 0.93742 0.89825 1.53879 0.91586 1.20007 0.87771 0.82519 0.99753 1.45985 1.42342 1.33427 1.03433 1.20865 0.79531 0.82867 0.85609 1.90307 1.38923 1.25997 1.86943 1.21186 1.06965 0.90749 0.88769 1.59071 1.11130 0.99909 1.64402 1.23054 0.93291 1.00540 1.01989 1.23053 0.96672 1.01629 0.95937 1.18065 0.93821 0.94688 0.85814 1.21050 1.02389 1.02359 0.90822 1.20850 0.97000 0.97158 0.97210 1.20970 0.99637 0.99921 0.97572 1.21001 0.99527 0.99751 0.92328 1.22455 0.97078 0.98831 1.01143 0.92078 0.93100 0.93593 0.80599 0.82395 0.88856 0.87595 0.87764 0.88126 0.84767 0.86482 0.87090 0.86754 0.81286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.08 13.29 55.43 0.74 -21.34 16 2 C 0.07 1.77 5.35 -17.82 -0.10 1.68 16 3 Si 0.90 19.46 29.54 -169.99 -5.02 14.44 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 6 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.55 -12.99 6.06 -34.44 -0.21 -13.20 16 8 H 0.07 1.64 7.58 -52.49 -0.40 1.24 16 9 C 0.22 4.90 4.16 -5.19 -0.02 4.88 16 10 N -0.53 -11.42 2.69 -114.74 -0.31 -11.73 16 11 C 0.52 10.87 7.21 -10.99 -0.08 10.80 16 12 O -0.54 -11.72 12.77 5.55 0.07 -11.65 16 13 C 0.02 0.39 2.27 -132.75 -0.30 0.09 16 14 N -0.80 -15.73 8.56 -0.19 0.00 -15.73 16 15 C -0.15 -2.36 10.17 -26.69 -0.27 -2.63 16 16 C -0.13 -2.11 9.98 -26.69 -0.27 -2.37 16 17 C 0.17 3.61 6.48 -83.69 -0.54 3.07 16 18 C -0.15 -2.86 9.26 -39.39 -0.36 -3.23 16 19 C -0.10 -1.74 10.04 -39.61 -0.40 -2.14 16 20 C -0.16 -2.56 10.04 -39.55 -0.40 -2.96 16 21 C -0.11 -1.81 10.04 -39.61 -0.40 -2.21 16 22 C -0.18 -3.47 8.98 -39.39 -0.35 -3.83 16 23 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 24 H 0.05 1.16 5.08 -51.93 -0.26 0.90 16 25 H 0.05 1.09 6.17 -51.93 -0.32 0.77 16 26 H 0.37 7.88 5.23 -39.29 -0.21 7.67 16 27 H 0.36 7.47 6.90 -39.29 -0.27 7.20 16 28 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 29 H 0.11 1.54 8.14 -51.93 -0.42 1.11 16 30 H 0.10 1.50 8.14 -51.93 -0.42 1.07 16 31 H 0.10 1.56 7.67 -51.93 -0.40 1.16 16 32 H 0.13 2.74 6.10 -52.49 -0.32 2.41 16 33 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 34 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 35 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 36 H 0.17 3.53 4.71 -55.22 -0.26 3.27 16 LS Contribution 294.54 15.07 4.44 4.44 Total: -1.00 -25.29 294.54 -7.89 -33.18 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: -4.11 Total: 20.45 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: -3.70 Total: -12.06 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: 0.43 Total: -48.79 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.07 Total: -11.65 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.44 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -25.29 -7.89 -33.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088129710.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.389 kcal (2) G-P(sol) polarization free energy of solvation -25.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds