Wall clock time and date at job start Mon Mar 30 2020 04:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00176 * 2 1 4 4 H 1.48504 * 109.47496 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47213 * 299.99470 * 3 2 1 6 6 H 1.48498 * 109.47671 * 59.99133 * 3 2 1 7 7 C 1.37877 * 119.99983 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00102 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99909 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.47324 * 179.97438 * 9 7 2 11 11 C 1.34771 * 119.99793 * 265.91027 * 10 9 7 12 12 O 1.21291 * 119.99906 * 186.49000 * 11 10 9 13 13 C 1.50695 * 120.00338 * 6.48793 * 11 10 9 14 14 N 1.46903 * 115.54897 * 34.92800 * 13 11 10 15 15 C 1.52997 * 117.50019 * 249.25741 * 13 11 10 16 16 C 1.53004 * 117.50079 * 180.59664 * 13 11 10 17 17 C 1.39921 * 119.99866 * 85.91223 * 10 9 7 18 18 C 1.38877 * 120.07094 * 7.01776 * 17 10 9 19 19 C 1.38116 * 119.92876 * 180.30359 * 18 17 10 20 20 C 1.38283 * 120.06695 * 359.46215 * 19 18 17 21 21 C 1.38282 * 120.14361 * 0.51746 * 20 19 18 22 22 C 1.38114 * 120.07106 * 359.76172 * 21 20 19 23 23 H 0.97006 * 119.99458 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.47388 * 59.99283 * 9 7 2 25 25 H 1.09000 * 109.47248 * 299.99456 * 9 7 2 26 26 H 1.00900 * 110.99709 * 279.91664 * 14 13 11 27 27 H 1.00901 * 111.00160 * 43.86558 * 14 13 11 28 28 H 1.08998 * 117.49855 * 359.97438 * 15 13 11 29 29 H 1.09004 * 117.49821 * 145.02317 * 15 13 11 30 30 H 1.09005 * 117.49737 * 214.98580 * 16 13 11 31 31 H 1.09003 * 117.49454 * 359.97438 * 16 13 11 32 32 H 1.07999 * 120.03726 * 0.02588 * 18 17 10 33 33 H 1.07989 * 119.96709 * 179.70222 * 19 18 17 34 34 H 1.08004 * 119.92726 * 180.23153 * 20 19 18 35 35 H 1.07996 * 119.96634 * 179.73946 * 21 20 19 36 36 H 1.07990 * 120.03677 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8903 2.3966 1.2123 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.5775 -4.1790 -1.1637 12 8 3.2717 -5.1736 -1.1586 13 6 2.1339 -3.5765 -2.4718 14 7 2.0362 -2.1109 -2.4935 15 6 1.1213 -4.3644 -3.3051 16 6 2.5806 -4.2738 -3.7583 17 6 2.7232 -4.0883 1.2092 18 6 2.2316 -3.6072 2.4157 19 6 2.7517 -4.0741 3.6070 20 6 3.7530 -5.0278 3.5993 21 6 4.2443 -5.5093 2.3997 22 6 3.7325 -5.0422 1.2049 23 1 -0.4850 0.8401 -0.0004 24 1 0.6245 -2.5570 -0.8896 25 1 0.6241 -2.5567 0.8903 26 1 1.1753 -1.7996 -2.0692 27 1 2.8344 -1.6885 -2.0434 28 1 0.7762 -5.3188 -2.9074 29 1 0.3828 -3.7953 -3.8699 30 1 2.8016 -3.6451 -4.6209 31 1 3.1956 -5.1682 -3.6585 32 1 1.4467 -2.8654 2.4224 33 1 2.3732 -3.6969 4.5454 34 1 4.1554 -5.3941 4.5323 35 1 5.0292 -6.2510 2.3971 36 1 4.1169 -5.4183 0.2684 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088129710.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:38 Heat of formation + Delta-G solvation = 31.203243 kcal Electronic energy + Delta-G solvation = -19896.494256 eV Core-core repulsion = 16960.796748 eV Total energy + Delta-G solvation = -2935.697508 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.01374 -39.63436 -37.68762 -37.13550 -34.70830 -32.11953 -31.78855 -30.54313 -29.20631 -25.49076 -25.03703 -23.57434 -23.25076 -22.15266 -20.11294 -18.86238 -18.34716 -18.15669 -17.17724 -16.59438 -16.53205 -15.92690 -15.70507 -15.46242 -14.94164 -14.84662 -14.42872 -14.16285 -13.95435 -13.66811 -13.20278 -13.13756 -12.77014 -12.63762 -12.37736 -12.25412 -11.98993 -11.93630 -11.74959 -11.23783 -10.94066 -10.74214 -10.61470 -9.80562 -9.33765 -8.80782 -8.25684 -6.40834 0.36289 0.54311 1.39506 1.43926 1.49666 1.55209 1.97406 2.37538 2.86397 3.03196 3.04420 3.39917 3.47115 4.03879 4.08740 4.16251 4.20699 4.38295 4.50527 4.59052 4.62628 4.69158 4.75921 4.89899 4.96903 5.02432 5.22688 5.25859 5.41394 5.57987 5.61586 5.67292 5.74580 5.87181 6.24802 6.34287 6.40528 6.61709 6.67527 7.06476 7.28934 8.77434 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.013921 B = 0.010048 C = 0.006492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.895827 B = 2785.850289 C = 4312.003262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.042 3.958 3 Si 0.952 3.048 4 H -0.275 1.275 5 H -0.275 1.275 6 H -0.283 1.283 7 C -0.543 4.543 8 H 0.050 0.950 9 C 0.236 3.764 10 N -0.540 5.540 11 C 0.514 3.486 12 O -0.557 6.557 13 C -0.010 4.010 14 N -0.795 5.795 15 C -0.135 4.135 16 C -0.115 4.115 17 C 0.138 3.862 18 C -0.166 4.166 19 C -0.100 4.100 20 C -0.150 4.150 21 C -0.104 4.104 22 C -0.195 4.195 23 H 0.271 0.729 24 H 0.047 0.953 25 H 0.027 0.973 26 H 0.360 0.640 27 H 0.348 0.652 28 H 0.099 0.901 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.102 0.898 32 H 0.116 0.884 33 H 0.147 0.853 34 H 0.153 0.847 35 H 0.145 0.855 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.212 -6.521 0.614 7.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.161 4.161 3 Si 0.778 3.222 4 H -0.200 1.200 5 H -0.200 1.200 6 H -0.209 1.209 7 C -0.581 4.581 8 H 0.068 0.932 9 C 0.116 3.884 10 N -0.258 5.258 11 C 0.304 3.696 12 O -0.437 6.437 13 C -0.108 4.108 14 N -0.333 5.333 15 C -0.173 4.173 16 C -0.153 4.153 17 C 0.043 3.957 18 C -0.187 4.187 19 C -0.118 4.118 20 C -0.168 4.168 21 C -0.122 4.122 22 C -0.215 4.215 23 H 0.081 0.919 24 H 0.065 0.935 25 H 0.045 0.955 26 H 0.181 0.819 27 H 0.164 0.836 28 H 0.117 0.883 29 H 0.138 0.862 30 H 0.139 0.861 31 H 0.121 0.879 32 H 0.134 0.866 33 H 0.164 0.836 34 H 0.171 0.829 35 H 0.163 0.837 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 3.342 -6.909 -0.247 7.679 hybrid contribution 0.094 1.224 1.260 1.759 sum 3.437 -5.685 1.013 6.720 Atomic orbital electron populations 1.69975 1.06870 1.28471 1.48845 1.25400 0.95380 1.01494 0.93828 0.85586 0.78832 0.79984 0.77780 1.19984 1.20046 1.20870 1.21302 0.92819 0.90544 1.53415 0.93181 1.19678 0.87628 0.82631 0.98471 1.45978 1.42387 1.33270 1.04208 1.21317 0.79317 0.82808 0.86151 1.90294 1.39570 1.26634 1.87250 1.21376 1.10348 0.90189 0.88875 1.59079 1.09964 1.00711 1.63573 1.23175 0.93553 1.00170 1.00391 1.23132 0.96612 1.01111 0.94458 1.18412 0.95151 0.96082 0.86031 1.21083 1.02857 1.02919 0.91802 1.21237 0.96665 0.96754 0.97189 1.21423 0.98222 0.98380 0.98818 1.21384 0.99592 0.99644 0.91613 1.22441 0.97571 0.99429 1.02018 0.91918 0.93511 0.95496 0.81918 0.83578 0.88287 0.86165 0.86097 0.87947 0.86568 0.83556 0.82913 0.83688 0.82723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.80 13.29 21.45 0.28 -45.52 16 2 C 0.04 2.05 5.35 84.65 0.45 2.50 16 3 Si 0.95 40.09 29.54 68.60 2.03 42.12 16 4 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.28 -11.37 7.11 99.48 0.71 -10.66 16 6 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.54 -26.27 6.06 25.60 0.16 -26.11 16 8 H 0.05 2.56 7.58 -2.91 -0.02 2.54 16 9 C 0.24 10.95 4.16 85.63 0.36 11.31 16 10 N -0.54 -23.88 2.69 -635.30 -1.71 -25.59 16 11 C 0.51 21.86 7.21 87.66 0.63 22.49 16 12 O -0.56 -24.50 12.77 -3.06 -0.04 -24.53 16 13 C -0.01 -0.38 2.27 2.78 0.01 -0.38 16 14 N -0.80 -31.40 8.56 -154.52 -1.32 -32.72 16 15 C -0.14 -4.07 10.17 30.62 0.31 -3.76 16 16 C -0.11 -3.44 9.98 30.62 0.31 -3.14 16 17 C 0.14 5.93 6.48 38.15 0.25 6.17 16 18 C -0.17 -6.59 9.26 22.39 0.21 -6.38 16 19 C -0.10 -3.16 10.04 22.25 0.22 -2.94 16 20 C -0.15 -4.22 10.04 22.29 0.22 -4.00 16 21 C -0.10 -3.27 10.04 22.25 0.22 -3.05 16 22 C -0.19 -7.71 8.98 22.39 0.20 -7.51 16 23 H 0.27 13.13 8.31 -92.70 -0.77 12.36 16 24 H 0.05 2.21 5.08 -2.38 -0.01 2.20 16 25 H 0.03 1.35 6.17 -2.39 -0.01 1.33 16 26 H 0.36 15.55 5.23 -89.69 -0.47 15.08 16 27 H 0.35 14.84 6.90 -89.69 -0.62 14.22 16 28 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 29 H 0.12 3.28 8.14 -2.39 -0.02 3.26 16 30 H 0.12 3.21 8.14 -2.38 -0.02 3.19 16 31 H 0.10 3.05 7.67 -2.39 -0.02 3.03 16 32 H 0.12 4.94 6.10 -2.91 -0.02 4.93 16 33 H 0.15 3.69 8.06 -2.92 -0.02 3.67 16 34 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 35 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 36 H 0.16 6.58 4.71 -46.17 -0.22 6.36 16 Total: -1.00 -54.84 294.54 2.62 -52.22 By element: Atomic # 1 Polarization: 48.98 SS G_CDS: -0.17 Total: 48.81 kcal Atomic # 6 Polarization: -18.34 SS G_CDS: 3.54 Total: -14.79 kcal Atomic # 7 Polarization: -101.08 SS G_CDS: -2.74 Total: -103.82 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.04 Total: -24.53 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 2.03 Total: 42.12 kcal Total: -54.84 2.62 -52.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088129710.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.423 kcal (2) G-P(sol) polarization free energy of solvation -54.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds