Wall clock time and date at job start Mon Mar 30 2020 04:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47302 * 2 1 4 4 O 1.42900 * 109.47636 * 240.00288 * 2 1 3 5 5 C 1.53000 * 109.47328 * 119.99947 * 2 1 3 6 6 N 1.46499 * 109.46840 * 59.99969 * 5 2 1 7 7 C 1.37850 * 126.53633 * 90.02950 * 6 5 2 8 8 C 1.40190 * 125.30647 * 359.95886 * 7 6 5 9 9 H 1.08004 * 119.99770 * 0.02562 * 8 7 6 10 10 C 1.40345 * 120.00423 * 179.97438 * 8 7 6 11 11 N 1.30587 * 119.99815 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00348 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.46883 * 90.00017 * 12 10 8 14 14 H 1.48491 * 109.47157 * 210.00334 * 12 10 8 15 15 H 1.48500 * 109.46973 * 330.00773 * 12 10 8 16 16 N 1.32468 * 109.39444 * 179.97438 * 7 6 5 17 17 C 1.33972 * 109.77694 * 359.97438 * 16 7 6 18 18 C 1.40540 * 133.19506 * 179.97438 * 17 16 7 19 19 C 1.36357 * 119.84760 * 180.02562 * 18 17 16 20 20 C 1.39043 * 120.75990 * 359.97438 * 19 18 17 21 21 C 1.37962 * 120.57274 * 0.02562 * 20 19 18 22 22 C 1.37958 * 126.54257 * 269.71235 * 6 5 2 23 23 H 1.08992 * 109.47554 * 299.99692 * 1 2 3 24 24 H 1.09004 * 109.47108 * 59.99942 * 1 2 3 25 25 H 1.09000 * 109.46870 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47508 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47437 * 300.00386 * 3 2 1 28 28 H 1.09001 * 109.47109 * 59.99598 * 3 2 1 29 29 H 0.96698 * 114.00516 * 180.02562 * 4 2 1 30 30 H 1.09002 * 109.47398 * 180.02562 * 5 2 1 31 31 H 1.09001 * 109.47194 * 300.00476 * 5 2 1 32 32 H 0.97005 * 119.99754 * 179.97438 * 11 10 8 33 33 H 1.07993 * 120.07700 * 359.97438 * 18 17 16 34 34 H 1.07999 * 119.61660 * 180.02562 * 19 18 17 35 35 H 1.08003 * 119.71010 * 180.02562 * 20 19 18 36 36 H 1.08002 * 120.11421 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0400 -0.7212 1.2492 6 7 1.5517 -2.1024 1.2492 7 6 2.1827 -3.1960 0.6959 8 6 3.4159 -3.1686 0.0297 9 1 3.9491 -2.2360 -0.0813 10 6 3.9581 -4.3532 -0.4922 11 7 3.3136 -5.4810 -0.3576 12 14 5.6017 -4.3169 -1.3792 13 1 6.6969 -4.5395 -0.4014 14 1 5.6322 -5.3864 -2.4088 15 1 5.7825 -2.9956 -2.0324 16 7 1.4421 -4.2768 0.8914 17 6 0.3290 -3.9485 1.5608 18 6 -0.7731 -4.6914 2.0176 19 6 -1.7826 -4.0656 2.6874 20 6 -1.7362 -2.6966 2.9261 21 6 -0.6660 -1.9439 2.4885 22 6 0.3755 -2.5579 1.8082 23 1 -0.3634 0.5137 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9564 -0.8899 28 1 1.6766 1.9564 0.8900 29 1 2.9704 -0.7121 -1.2327 30 1 3.1300 -0.7208 1.2495 31 1 1.6766 -0.2074 2.1392 32 1 3.6882 -6.2997 -0.7186 33 1 -0.8207 -5.7552 1.8380 34 1 -2.6275 -4.6402 3.0372 35 1 -2.5450 -2.2184 3.4587 36 1 -0.6378 -0.8809 2.6776 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111727199.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:09 Heat of formation + Delta-G solvation = 10.266442 kcal Electronic energy + Delta-G solvation = -20045.492816 eV Core-core repulsion = 17108.887420 eV Total energy + Delta-G solvation = -2936.605396 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.48573 -37.78174 -35.91870 -33.61161 -32.83083 -31.22359 -29.36822 -28.54604 -27.09204 -25.87029 -25.52025 -21.34124 -20.64762 -20.39769 -19.30781 -17.01096 -16.55285 -16.16084 -15.38716 -14.86856 -14.80634 -14.57495 -13.99508 -13.16792 -13.03327 -12.91574 -12.66797 -12.27159 -12.18100 -11.91384 -11.58612 -11.47037 -11.45703 -11.33580 -10.97967 -10.75635 -10.56260 -10.41834 -10.28186 -10.18988 -9.79055 -9.22758 -8.87490 -7.85507 -7.17790 -6.80064 -6.64076 -4.57776 2.29305 2.74239 3.00007 3.02236 3.05649 3.78337 4.02932 4.18309 4.62064 4.93512 5.06937 5.16231 5.25079 5.49804 5.59290 5.69225 5.70779 5.86837 5.87596 5.96885 6.03135 6.09207 6.22535 6.28873 6.43740 6.57410 6.64622 6.75592 6.89028 7.00901 7.28975 7.50219 7.64769 7.76611 7.94300 8.00350 8.16152 8.36052 8.67135 9.07155 10.00528 10.25372 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.016331 B = 0.009802 C = 0.006488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.106141 B = 2855.973388 C = 4314.408231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.111 3.889 3 C -0.175 4.175 4 O -0.542 6.542 5 C 0.107 3.893 6 N -0.529 5.529 7 C 0.431 3.569 8 C -0.432 4.432 9 H 0.082 0.918 10 C 0.077 3.923 11 N -0.716 5.716 12 Si 0.916 3.084 13 H -0.270 1.270 14 H -0.275 1.275 15 H -0.261 1.261 16 N -0.538 5.538 17 C 0.110 3.890 18 C -0.131 4.131 19 C -0.124 4.124 20 C -0.184 4.184 21 C -0.103 4.103 22 C -0.001 4.001 23 H 0.061 0.939 24 H 0.054 0.946 25 H 0.073 0.927 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.374 0.626 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.278 0.722 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.311 9.320 1.188 9.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.068 3.932 3 C -0.233 4.233 4 O -0.347 6.347 5 C -0.018 4.018 6 N -0.224 5.224 7 C 0.194 3.806 8 C -0.470 4.470 9 H 0.100 0.900 10 C -0.150 4.150 11 N -0.338 5.338 12 Si 0.740 3.260 13 H -0.195 1.195 14 H -0.200 1.200 15 H -0.185 1.185 16 N -0.261 5.261 17 C -0.018 4.018 18 C -0.152 4.152 19 C -0.145 4.145 20 C -0.205 4.205 21 C -0.125 4.125 22 C -0.108 4.108 23 H 0.080 0.920 24 H 0.073 0.927 25 H 0.092 0.908 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.222 0.778 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.125 0.875 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.676 8.323 0.750 8.384 hybrid contribution 1.118 1.018 0.051 1.513 sum 0.442 9.342 0.800 9.386 Atomic orbital electron populations 1.21746 0.92756 1.03774 1.01037 1.21622 0.95510 0.89946 0.86090 1.22461 1.01386 0.96940 1.02524 1.86636 1.26590 1.79283 1.42239 1.21977 0.99711 0.82224 0.97917 1.45285 1.18385 1.06785 1.51966 1.20353 0.92488 0.78519 0.89193 1.18318 1.00677 0.95424 1.32539 0.90016 1.25843 0.98933 0.94741 0.95469 1.69974 1.34908 0.99082 1.29847 0.86200 0.81167 0.79304 0.79373 1.19475 1.19978 1.18531 1.71397 1.04336 1.24396 1.25968 1.19565 0.95164 0.89987 0.97088 1.19770 0.93653 0.98511 1.03276 1.20193 0.98269 0.94441 1.01570 1.20269 0.98898 0.94080 1.07264 1.19583 0.93602 0.97509 1.01785 1.18815 0.90657 0.96138 1.05200 0.91977 0.92670 0.90768 0.92316 0.91750 0.91890 0.77846 0.90004 0.90875 0.91057 0.87536 0.87958 0.88004 0.88822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 7.90 37.16 0.29 -1.97 16 2 C 0.11 1.78 1.17 -90.62 -0.11 1.67 16 3 C -0.17 -2.10 8.81 37.16 0.33 -1.77 16 4 O -0.54 -10.09 12.07 -35.23 -0.43 -10.51 16 5 C 0.11 1.89 5.05 -4.04 -0.02 1.87 16 6 N -0.53 -12.12 2.46 -113.48 -0.28 -12.40 16 7 C 0.43 11.43 7.12 -155.68 -1.11 10.32 16 8 C -0.43 -10.70 8.34 -38.06 -0.32 -11.02 16 9 H 0.08 1.78 6.21 -52.48 -0.33 1.45 16 10 C 0.08 1.89 5.50 -17.29 -0.10 1.80 16 11 N -0.72 -19.04 11.85 55.57 0.66 -18.38 16 12 Si 0.92 17.69 29.56 -169.99 -5.03 12.66 16 13 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 14 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 15 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 16 N -0.54 -15.51 9.33 -10.31 -0.10 -15.61 16 17 C 0.11 2.90 7.21 -84.89 -0.61 2.29 16 18 C -0.13 -3.05 10.07 -39.39 -0.40 -3.45 16 19 C -0.12 -2.48 9.96 -39.96 -0.40 -2.88 16 20 C -0.18 -3.55 10.04 -39.38 -0.40 -3.94 16 21 C -0.10 -2.10 9.04 -39.50 -0.36 -2.46 16 22 C 0.00 -0.01 5.38 -83.75 -0.45 -0.47 16 23 H 0.06 0.90 7.71 -51.93 -0.40 0.50 16 24 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.07 1.53 6.10 -51.93 -0.32 1.21 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.37 6.03 7.99 45.56 0.36 6.39 16 30 H 0.08 1.36 7.32 -51.93 -0.38 0.98 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.28 6.70 8.29 -40.82 -0.34 6.36 16 33 H 0.11 2.38 8.06 -52.49 -0.42 1.96 16 34 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 35 H 0.10 1.64 8.06 -52.48 -0.42 1.22 16 36 H 0.09 1.66 7.60 -52.49 -0.40 1.26 16 LS Contribution 298.28 15.07 4.49 4.49 Total: -1.00 -30.97 298.28 -8.28 -39.25 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -3.97 Total: 10.51 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -3.64 Total: -10.02 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: 0.28 Total: -46.39 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: -0.43 Total: -10.51 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.03 Total: 12.66 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.97 -8.28 -39.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111727199.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.520 kcal (2) G-P(sol) polarization free energy of solvation -30.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds