Wall clock time and date at job start Mon Mar 30 2020 04:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47302 * 2 1 4 4 O 1.42900 * 109.47636 * 240.00288 * 2 1 3 5 5 C 1.53000 * 109.47328 * 119.99947 * 2 1 3 6 6 N 1.46499 * 109.46840 * 59.99969 * 5 2 1 7 7 C 1.37850 * 126.53633 * 90.02950 * 6 5 2 8 8 C 1.40190 * 125.30647 * 359.95886 * 7 6 5 9 9 H 1.08004 * 119.99770 * 0.02562 * 8 7 6 10 10 C 1.40345 * 120.00423 * 179.97438 * 8 7 6 11 11 N 1.30587 * 119.99815 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00348 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.46883 * 90.00017 * 12 10 8 14 14 H 1.48491 * 109.47157 * 210.00334 * 12 10 8 15 15 H 1.48500 * 109.46973 * 330.00773 * 12 10 8 16 16 N 1.32468 * 109.39444 * 179.97438 * 7 6 5 17 17 C 1.33972 * 109.77694 * 359.97438 * 16 7 6 18 18 C 1.40540 * 133.19506 * 179.97438 * 17 16 7 19 19 C 1.36357 * 119.84760 * 180.02562 * 18 17 16 20 20 C 1.39043 * 120.75990 * 359.97438 * 19 18 17 21 21 C 1.37962 * 120.57274 * 0.02562 * 20 19 18 22 22 C 1.37958 * 126.54257 * 269.71235 * 6 5 2 23 23 H 1.08992 * 109.47554 * 299.99692 * 1 2 3 24 24 H 1.09004 * 109.47108 * 59.99942 * 1 2 3 25 25 H 1.09000 * 109.46870 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47508 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47437 * 300.00386 * 3 2 1 28 28 H 1.09001 * 109.47109 * 59.99598 * 3 2 1 29 29 H 0.96698 * 114.00516 * 180.02562 * 4 2 1 30 30 H 1.09002 * 109.47398 * 180.02562 * 5 2 1 31 31 H 1.09001 * 109.47194 * 300.00476 * 5 2 1 32 32 H 0.97005 * 119.99754 * 179.97438 * 11 10 8 33 33 H 1.07993 * 120.07700 * 359.97438 * 18 17 16 34 34 H 1.07999 * 119.61660 * 180.02562 * 19 18 17 35 35 H 1.08003 * 119.71010 * 180.02562 * 20 19 18 36 36 H 1.08002 * 120.11421 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0400 -0.7212 1.2492 6 7 1.5517 -2.1024 1.2492 7 6 2.1827 -3.1960 0.6959 8 6 3.4159 -3.1686 0.0297 9 1 3.9491 -2.2360 -0.0813 10 6 3.9581 -4.3532 -0.4922 11 7 3.3136 -5.4810 -0.3576 12 14 5.6017 -4.3169 -1.3792 13 1 6.6969 -4.5395 -0.4014 14 1 5.6322 -5.3864 -2.4088 15 1 5.7825 -2.9956 -2.0324 16 7 1.4421 -4.2768 0.8914 17 6 0.3290 -3.9485 1.5608 18 6 -0.7731 -4.6914 2.0176 19 6 -1.7826 -4.0656 2.6874 20 6 -1.7362 -2.6966 2.9261 21 6 -0.6660 -1.9439 2.4885 22 6 0.3755 -2.5579 1.8082 23 1 -0.3634 0.5137 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9564 -0.8899 28 1 1.6766 1.9564 0.8900 29 1 2.9704 -0.7121 -1.2327 30 1 3.1300 -0.7208 1.2495 31 1 1.6766 -0.2074 2.1392 32 1 3.6882 -6.2997 -0.7186 33 1 -0.8207 -5.7552 1.8380 34 1 -2.6275 -4.6402 3.0372 35 1 -2.5450 -2.2184 3.4587 36 1 -0.6378 -0.8809 2.6776 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111727199.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:08 Heat of formation + Delta-G solvation = -10.165268 kcal Electronic energy + Delta-G solvation = -20046.378801 eV Core-core repulsion = 17108.887420 eV Total energy + Delta-G solvation = -2937.491381 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.20099 -39.14426 -37.58720 -35.36287 -34.43086 -32.67526 -31.04047 -30.29880 -28.25211 -27.62768 -26.99099 -23.09351 -22.34721 -21.85566 -20.89667 -18.74016 -18.11122 -17.81089 -16.90597 -16.51573 -16.21801 -15.88554 -15.61078 -14.71973 -14.63652 -14.53652 -14.36790 -13.50120 -13.41426 -13.19460 -13.09163 -13.00339 -12.88498 -12.63704 -12.48716 -12.31850 -12.20568 -11.94666 -11.84401 -11.76704 -11.22456 -10.92242 -10.51510 -9.72963 -8.94551 -8.54095 -8.43556 -6.45590 0.56597 1.06123 1.43217 1.48190 1.58823 2.17812 2.40206 2.46782 3.21014 3.41828 3.69487 3.79315 3.89221 4.00909 4.11858 4.31702 4.34742 4.49480 4.55358 4.68943 4.75689 4.85676 4.92650 4.94761 5.01495 5.03821 5.19227 5.24403 5.28654 5.35140 5.62800 5.73862 5.95943 6.04223 6.22626 6.28441 6.59638 6.85871 6.93397 7.30398 8.17114 8.49502 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.016331 B = 0.009802 C = 0.006488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.106141 B = 2855.973388 C = 4314.408231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.109 3.891 3 C -0.163 4.163 4 O -0.570 6.570 5 C 0.098 3.902 6 N -0.526 5.526 7 C 0.402 3.598 8 C -0.452 4.452 9 H 0.105 0.895 10 C 0.028 3.972 11 N -0.774 5.774 12 Si 0.998 3.002 13 H -0.264 1.264 14 H -0.278 1.278 15 H -0.241 1.241 16 N -0.593 5.593 17 C 0.049 3.951 18 C -0.155 4.155 19 C -0.119 4.119 20 C -0.168 4.168 21 C -0.103 4.103 22 C -0.010 4.010 23 H 0.088 0.912 24 H 0.061 0.939 25 H 0.028 0.972 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.381 0.619 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.279 0.721 33 H 0.097 0.903 34 H 0.139 0.861 35 H 0.148 0.852 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.530 12.521 2.043 12.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.068 3.932 3 C -0.221 4.221 4 O -0.377 6.377 5 C -0.025 4.025 6 N -0.220 5.220 7 C 0.164 3.836 8 C -0.490 4.490 9 H 0.123 0.877 10 C -0.194 4.194 11 N -0.398 5.398 12 Si 0.817 3.183 13 H -0.189 1.189 14 H -0.204 1.204 15 H -0.163 1.163 16 N -0.318 5.318 17 C -0.077 4.077 18 C -0.176 4.176 19 C -0.139 4.139 20 C -0.188 4.188 21 C -0.125 4.125 22 C -0.118 4.118 23 H 0.106 0.894 24 H 0.080 0.920 25 H 0.047 0.953 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.103 0.897 29 H 0.230 0.770 30 H 0.107 0.893 31 H 0.115 0.885 32 H 0.090 0.910 33 H 0.115 0.885 34 H 0.157 0.843 35 H 0.166 0.834 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.924 11.576 1.632 11.727 hybrid contribution 0.961 0.061 -0.092 0.968 sum 0.038 11.636 1.541 11.738 Atomic orbital electron populations 1.21733 0.93353 1.01168 1.02692 1.21761 0.95101 0.91982 0.84380 1.22342 1.02288 0.93599 1.03849 1.86611 1.27422 1.80207 1.43492 1.22379 1.00341 0.79932 0.99875 1.45406 1.17751 1.07990 1.50869 1.20718 0.93265 0.79429 0.90214 1.18803 1.00703 0.96671 1.32823 0.87693 1.26997 1.02834 0.93913 0.95658 1.70153 1.37465 1.00099 1.32072 0.84981 0.75586 0.79931 0.77789 1.18854 1.20363 1.16333 1.71247 1.05994 1.26864 1.27707 1.20116 0.95966 0.92405 0.99204 1.20030 0.94452 0.98452 1.04678 1.20615 0.97998 0.95446 0.99889 1.20870 0.99166 0.93611 1.05171 1.20018 0.92617 0.99291 1.00534 1.19169 0.91737 0.95319 1.05577 0.89360 0.91956 0.95322 0.90906 0.91226 0.89706 0.77014 0.89271 0.88544 0.91042 0.88485 0.84276 0.83413 0.85466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.16 7.90 71.98 0.57 -3.59 16 2 C 0.11 3.30 1.17 -10.79 -0.01 3.28 16 3 C -0.16 -3.29 8.81 71.98 0.63 -2.66 16 4 O -0.57 -20.97 12.07 -148.98 -1.80 -22.76 16 5 C 0.10 3.29 5.05 86.38 0.44 3.73 16 6 N -0.53 -24.34 2.46 -512.94 -1.26 -25.60 16 7 C 0.40 22.28 7.12 133.69 0.95 23.23 16 8 C -0.45 -23.08 8.34 23.26 0.19 -22.88 16 9 H 0.11 4.57 6.21 -2.91 -0.02 4.56 16 10 C 0.03 1.40 5.50 85.39 0.47 1.87 16 11 N -0.77 -43.75 11.85 21.89 0.26 -43.49 16 12 Si 1.00 36.89 29.56 68.60 2.03 38.92 16 13 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 14 H -0.28 -10.31 7.11 99.48 0.71 -9.61 16 15 H -0.24 -7.97 7.11 99.48 0.71 -7.27 16 16 N -0.59 -36.43 9.33 -186.52 -1.74 -38.17 16 17 C 0.05 2.69 7.21 40.14 0.29 2.98 16 18 C -0.15 -7.47 10.07 22.39 0.23 -7.24 16 19 C -0.12 -4.57 9.96 22.02 0.22 -4.35 16 20 C -0.17 -5.86 10.04 22.40 0.22 -5.64 16 21 C -0.10 -3.95 9.04 22.32 0.20 -3.75 16 22 C -0.01 -0.47 5.38 39.06 0.21 -0.26 16 23 H 0.09 2.23 7.71 -2.39 -0.02 2.21 16 24 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 25 H 0.03 1.15 6.10 -2.39 -0.01 1.14 16 26 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.08 1.36 8.14 -2.39 -0.02 1.35 16 29 H 0.38 12.06 7.99 -74.06 -0.59 11.46 16 30 H 0.09 2.83 7.32 -2.39 -0.02 2.81 16 31 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 32 H 0.28 14.39 8.29 -92.70 -0.77 13.62 16 33 H 0.10 4.65 8.06 -2.91 -0.02 4.62 16 34 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 35 H 0.15 3.86 8.06 -2.91 -0.02 3.84 16 36 H 0.13 3.95 7.60 -2.91 -0.02 3.93 16 Total: -1.00 -73.67 298.28 2.60 -71.07 By element: Atomic # 1 Polarization: 34.80 SS G_CDS: 0.50 Total: 35.31 kcal Atomic # 6 Polarization: -19.87 SS G_CDS: 4.61 Total: -15.26 kcal Atomic # 7 Polarization: -104.52 SS G_CDS: -2.74 Total: -107.26 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -1.80 Total: -22.76 kcal Atomic # 14 Polarization: 36.89 SS G_CDS: 2.03 Total: 38.92 kcal Total: -73.67 2.60 -71.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111727199.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.901 kcal (2) G-P(sol) polarization free energy of solvation -73.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds