Wall clock time and date at job start Mon Mar 30 2020 04:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46977 * 2 1 4 4 H 1.08999 * 109.46979 * 55.89360 * 3 2 1 5 5 O 1.42896 * 109.46890 * 295.89027 * 3 2 1 6 6 C 1.50697 * 109.46854 * 175.89125 * 3 2 1 7 7 C 1.38073 * 120.04499 * 92.48652 * 6 3 2 8 8 C 1.38308 * 120.08865 * 180.02562 * 7 6 3 9 9 C 1.38357 * 120.17949 * 0.02562 * 8 7 6 10 10 C 1.38026 * 120.09114 * 359.69462 * 9 8 7 11 11 C 1.39064 * 120.04604 * 272.50822 * 6 3 2 12 12 N 1.39297 * 120.08698 * 359.95424 * 11 6 3 13 13 C 1.36848 * 119.99842 * 89.22440 * 12 11 6 14 14 H 1.08005 * 120.00531 * 325.48801 * 13 12 11 15 15 C 1.38796 * 120.00001 * 145.48772 * 13 12 11 16 16 N 1.31595 * 120.00115 * 156.05272 * 15 13 12 17 17 Si 1.86801 * 120.00081 * 336.05267 * 15 13 12 18 18 H 1.48500 * 109.46934 * 95.74182 * 17 15 13 19 19 H 1.48499 * 109.47253 * 215.73900 * 17 15 13 20 20 H 1.48495 * 109.46969 * 335.74455 * 17 15 13 21 21 C 1.46499 * 120.00268 * 269.22383 * 12 11 6 22 22 C 1.47202 * 109.46962 * 95.31309 * 21 12 11 23 23 N 4.17574 * 77.25040 * 34.97784 * 2 1 3 24 24 H 1.08994 * 109.47203 * 299.99641 * 1 2 3 25 25 H 1.08995 * 109.47078 * 60.00094 * 1 2 3 26 26 H 1.08998 * 109.46647 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47048 * 239.99886 * 2 1 3 28 28 H 1.08999 * 109.46930 * 120.00390 * 2 1 3 29 29 H 0.96696 * 114.00223 * 299.99873 * 5 3 2 30 30 H 1.07998 * 119.95746 * 0.02562 * 7 6 3 31 31 H 1.07997 * 119.91432 * 179.97438 * 8 7 6 32 32 H 1.08002 * 119.95195 * 179.97438 * 9 8 7 33 33 H 1.08001 * 120.05001 * 180.30416 * 10 9 8 34 34 H 0.97004 * 120.00105 * 180.02562 * 16 15 13 35 35 H 1.09004 * 109.47436 * 215.31339 * 21 12 11 36 36 H 1.08998 * 109.47332 * 335.31022 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6178 1.9771 0.8509 5 8 1.6441 2.0876 -1.2120 6 6 3.5435 1.4437 0.1018 7 6 4.3140 1.4676 -1.0437 8 6 5.6940 1.4681 -0.9514 9 6 6.3081 1.4443 0.2882 10 6 5.5451 1.4262 1.4383 11 6 4.1570 1.4203 1.3496 12 7 3.3833 1.3967 2.5077 13 6 2.9916 0.2004 3.0447 14 1 2.7633 -0.6333 2.3971 15 6 2.8877 0.0585 4.4214 16 7 2.0976 -0.8627 4.9302 17 14 3.8696 1.1750 5.5522 18 1 3.0219 2.3175 5.9779 19 1 4.3050 0.4094 6.7478 20 1 5.0623 1.6857 4.8300 21 6 2.9889 2.6524 3.1510 22 6 1.6453 3.0389 2.6903 23 7 0.6085 3.3371 2.3348 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3632 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.9846 1.6646 -2.0121 30 1 3.8384 1.4858 -2.0132 31 1 6.2939 1.4864 -1.8492 32 1 7.3860 1.4444 0.3560 33 1 6.0252 1.4125 2.4056 34 1 2.0247 -0.9616 5.8924 35 1 2.9776 2.5187 4.2327 36 1 3.7017 3.4343 2.8891 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123281774.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:53 Heat of formation + Delta-G solvation = 34.181648 kcal Electronic energy + Delta-G solvation = -20109.472088 eV Core-core repulsion = 17173.903734 eV Total energy + Delta-G solvation = -2935.568355 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.64162 -36.86057 -36.54921 -34.94377 -32.34879 -32.00327 -30.49141 -29.69346 -27.20998 -25.59332 -23.91945 -21.88263 -20.93255 -20.35050 -18.21885 -17.22461 -16.42149 -15.92650 -15.58611 -15.16768 -14.95756 -14.12895 -13.93586 -13.60377 -13.45330 -12.94601 -12.65395 -12.59107 -12.26215 -12.18939 -12.03971 -11.63817 -11.43650 -11.38848 -11.25679 -10.89214 -10.85892 -10.50531 -10.24897 -10.08611 -9.71913 -9.58370 -8.88040 -8.35045 -8.02273 -7.54566 -6.28696 -3.76898 1.79104 1.84993 3.06753 3.26178 3.27080 3.36855 3.53202 4.18935 4.22830 4.64705 4.78886 4.88651 5.07652 5.11779 5.28342 5.44655 5.55531 5.64020 5.72339 5.78518 5.91452 5.98868 6.03035 6.22162 6.25577 6.31051 6.41989 6.59164 6.71042 6.82850 6.90294 6.92954 7.21556 7.28677 7.68408 7.99112 8.18680 8.28498 8.63660 9.35337 9.66121 10.84175 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.016492 B = 0.010349 C = 0.008117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.397177 B = 2704.829274 C = 3448.742380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.151 4.151 3 C 0.143 3.857 4 H 0.122 0.878 5 O -0.561 6.561 6 C -0.128 4.128 7 C -0.113 4.113 8 C -0.137 4.137 9 C -0.120 4.120 10 C -0.125 4.125 11 C 0.206 3.794 12 N -0.555 5.555 13 C -0.288 4.288 14 H 0.095 0.905 15 C 0.049 3.951 16 N -0.876 5.876 17 Si 0.863 3.137 18 H -0.278 1.278 19 H -0.292 1.292 20 H -0.260 1.260 21 C 0.215 3.785 22 C 0.201 3.799 23 N -0.454 5.454 24 H 0.055 0.945 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.097 0.903 29 H 0.362 0.638 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.115 0.885 33 H 0.123 0.877 34 H 0.270 0.730 35 H 0.094 0.906 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.674 3.781 -8.073 11.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.188 4.188 3 C 0.084 3.916 4 H 0.139 0.861 5 O -0.366 6.366 6 C -0.130 4.130 7 C -0.132 4.132 8 C -0.155 4.155 9 C -0.139 4.139 10 C -0.145 4.145 11 C 0.114 3.886 12 N -0.273 5.273 13 C -0.414 4.414 14 H 0.112 0.888 15 C -0.155 4.155 16 N -0.513 5.513 17 Si 0.691 3.309 18 H -0.206 1.206 19 H -0.219 1.219 20 H -0.184 1.184 21 C 0.087 3.913 22 C -0.118 4.118 23 N -0.134 5.134 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.115 0.885 29 H 0.208 0.792 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.141 0.859 34 H 0.080 0.920 35 H 0.111 0.889 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.750 4.472 -7.976 10.304 hybrid contribution 1.230 -0.173 0.602 1.380 sum 5.979 4.299 -7.373 10.421 Atomic orbital electron populations 1.21618 0.95599 1.00837 1.01746 1.22271 0.96538 0.96542 1.03460 1.21048 0.89062 0.93964 0.87530 0.86098 1.86641 1.76851 1.57409 1.15656 1.21164 0.96824 1.01281 0.93779 1.20641 0.93729 1.01604 0.97219 1.20922 0.94330 1.03005 0.97251 1.20976 0.99188 1.01256 0.92480 1.21755 0.93981 1.00302 0.98475 1.17407 0.89263 0.95333 0.86623 1.41406 1.56627 1.01956 1.27263 1.18749 1.42886 0.89278 0.90448 0.88814 1.25362 0.96705 0.96569 0.96856 1.69845 1.33720 1.34956 1.12801 0.87169 0.82302 0.80294 0.81100 1.20619 1.21942 1.18383 1.19233 0.84409 0.89320 0.98386 1.30988 0.96205 0.91842 0.92772 1.81037 1.12541 1.10023 1.09765 0.92580 0.93199 0.93228 0.93000 0.88461 0.79166 0.86997 0.86869 0.86737 0.85912 0.92009 0.88918 0.88693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.80 37.16 0.36 -2.16 16 2 C -0.15 -2.77 5.60 -26.73 -0.15 -2.92 16 3 C 0.14 2.68 2.95 -27.88 -0.08 2.60 16 4 H 0.12 2.59 3.78 -51.93 -0.20 2.39 16 5 O -0.56 -9.71 12.53 -35.23 -0.44 -10.15 16 6 C -0.13 -2.30 5.07 -104.38 -0.53 -2.83 16 7 C -0.11 -1.71 9.31 -39.62 -0.37 -2.08 16 8 C -0.14 -1.89 10.04 -39.51 -0.40 -2.28 16 9 C -0.12 -1.73 10.04 -39.62 -0.40 -2.13 16 10 C -0.12 -2.13 9.98 -39.34 -0.39 -2.52 16 11 C 0.21 3.95 4.99 -83.84 -0.42 3.53 16 12 N -0.55 -11.70 1.42 -116.25 -0.17 -11.86 16 13 C -0.29 -7.07 9.39 -15.11 -0.14 -7.21 16 14 H 0.09 2.51 5.90 -52.48 -0.31 2.20 16 15 C 0.05 1.25 5.31 -17.45 -0.09 1.16 16 16 N -0.88 -24.22 13.97 55.49 0.77 -23.45 16 17 Si 0.86 18.93 25.00 -169.99 -4.25 14.68 16 18 H -0.28 -5.90 6.68 56.52 0.38 -5.52 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 21 C 0.21 4.19 5.16 -6.83 -0.04 4.15 16 22 C 0.20 4.23 13.23 -20.76 -0.27 3.95 16 23 N -0.45 -10.13 17.82 42.15 0.75 -9.38 16 24 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 25 H 0.05 0.83 7.80 -51.93 -0.40 0.42 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.10 2.07 5.35 -51.93 -0.28 1.79 16 29 H 0.36 4.73 7.32 45.56 0.33 5.06 16 30 H 0.11 1.40 6.44 -52.49 -0.34 1.06 16 31 H 0.11 1.24 8.06 -52.49 -0.42 0.82 16 32 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 33 H 0.12 2.06 8.06 -52.49 -0.42 1.64 16 34 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 35 H 0.09 1.88 2.78 -51.93 -0.14 1.74 16 36 H 0.10 1.51 8.01 -51.93 -0.42 1.09 16 LS Contribution 296.79 15.07 4.47 4.47 Total: -1.00 -28.48 296.79 -5.22 -33.71 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -3.45 Total: 10.71 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -2.92 Total: -8.73 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: 1.36 Total: -44.69 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: -0.44 Total: -10.15 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -4.25 Total: 14.68 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.48 -5.22 -33.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123281774.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.888 kcal (2) G-P(sol) polarization free energy of solvation -28.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds