Wall clock time and date at job start Mon Mar 30 2020 04:36:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.53006 * 109.47072 * 2 1
4 4 N 1.46495 * 109.47475 * 120.00194 * 2 1 3
5 5 C 1.36716 * 120.00217 * 305.38985 * 4 2 1
6 6 H 1.08001 * 119.99820 * 46.68503 * 5 4 2
7 7 C 1.39123 * 120.00025 * 226.68832 * 5 4 2
8 8 N 1.31317 * 120.00091 * 8.28550 * 7 5 4
9 9 Si 1.86796 * 119.99805 * 188.28272 * 7 5 4
10 10 H 1.48504 * 109.47012 * 90.00433 * 9 7 5
11 11 H 1.48507 * 109.47330 * 209.99892 * 9 7 5
12 12 H 1.48501 * 109.47509 * 329.99852 * 9 7 5
13 13 C 1.34780 * 120.00162 * 125.39219 * 4 2 1
14 14 O 1.21751 * 120.00388 * 175.11308 * 13 4 2
15 15 C 1.46229 * 119.99778 * 355.38291 * 13 4 2
16 16 C 1.34970 * 120.00110 * 185.17578 * 15 13 4
17 17 C 1.47143 * 120.00216 * 180.02562 * 16 15 13
18 18 C 1.40303 * 120.59321 * 179.97438 * 17 16 15
19 19 C 1.38270 * 118.26664 * 179.97438 * 18 17 16
20 20 C 1.38399 * 119.34084 * 0.02562 * 19 18 17
21 21 N 1.31947 * 121.14510 * 0.02562 * 20 19 18
22 22 C 1.31657 * 121.90905 * 359.68009 * 21 20 19
23 23 H 1.09001 * 109.47157 * 305.20376 * 1 2 3
24 24 H 1.08997 * 109.47647 * 65.20437 * 1 2 3
25 25 H 1.09003 * 109.46622 * 185.20573 * 1 2 3
26 26 H 1.08998 * 109.47364 * 240.00704 * 2 1 3
27 27 H 1.08995 * 109.47812 * 184.80921 * 3 2 1
28 28 H 1.08997 * 109.47155 * 304.81408 * 3 2 1
29 29 H 1.09002 * 109.46642 * 64.80601 * 3 2 1
30 30 H 0.97004 * 120.00166 * 179.97438 * 8 7 5
31 31 H 1.07999 * 119.99831 * 5.17191 * 15 13 4
32 32 H 1.07999 * 120.00072 * 0.02562 * 16 15 13
33 33 H 1.08004 * 120.86501 * 359.96024 * 18 17 16
34 34 H 1.08005 * 120.33163 * 180.02562 * 19 18 17
35 35 H 1.08002 * 119.42887 * 179.97438 * 20 19 18
36 36 H 1.07989 * 119.74289 * 180.28744 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 7 2.0184 -0.6906 1.1961
5 6 1.5998 -0.2913 2.4348
6 1 0.5510 -0.1099 2.6180
7 6 2.5249 -0.1186 3.4595
8 7 3.8108 -0.1793 3.2002
9 14 1.9379 0.1997 5.2040
10 1 1.7670 -1.0942 5.9125
11 1 2.9410 1.0277 5.9206
12 1 0.6390 0.9186 5.1658
13 6 2.8804 -1.7196 1.0754
14 8 3.3553 -2.2360 2.0704
15 6 3.2498 -2.2121 -0.2510
16 6 4.0296 -3.3072 -0.3713
17 6 4.4018 -3.8025 -1.7059
18 6 5.2122 -4.9393 -1.8453
19 6 5.5320 -5.3630 -3.1220
20 6 5.0481 -4.6593 -4.2112
21 7 4.2884 -3.5924 -4.0515
22 6 3.9503 -3.1511 -2.8581
23 1 -0.3633 0.5924 0.8397
24 1 -0.3634 0.4310 -0.9329
25 1 -0.3633 -1.0235 0.0932
26 1 1.8933 -0.5137 -0.8900
27 1 3.1265 1.4439 -0.0861
28 1 1.6079 1.9807 -0.8437
29 1 1.7486 1.9309 0.9299
30 1 4.4559 -0.0585 3.9145
31 1 2.8987 -1.6996 -1.1344
32 1 4.3803 -3.8200 0.5121
33 1 5.5769 -5.4695 -0.9779
34 1 6.1532 -6.2343 -3.2680
35 1 5.2973 -4.9887 -5.2091
36 1 3.3228 -2.2768 -2.7681
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000126729187.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:36:48
Heat of formation + Delta-G solvation = 32.374417 kcal
Electronic energy + Delta-G solvation = -19040.300419 eV
Core-core repulsion = 16104.653697 eV
Total energy + Delta-G solvation = -2935.646722 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 260.127 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-39.94235 -38.49625 -35.29491 -33.97240 -32.40101 -32.03985 -30.01246 -29.33017
-26.46646 -25.57624 -23.85128 -23.28682 -21.17612 -20.47827 -18.43849 -17.37581
-16.67267 -15.80832 -15.59708 -15.11585 -14.61471 -13.98214 -13.85473 -13.59914
-13.38141 -13.11550 -13.01170 -12.89711 -12.05160 -11.87089 -11.61112 -11.52382
-11.34797 -11.01692 -10.88103 -10.71775 -10.42564 -10.34499 -10.18054 -9.86402
-9.53822 -9.36322 -8.78464 -8.02373 -7.96608 -7.05673 -6.05225 -3.87626
0.77574 1.31644 2.55229 3.30107 3.35332 3.37324 3.99040 4.26542
4.47240 4.79600 4.86555 4.90493 5.00193 5.08991 5.15084 5.32707
5.40015 5.58261 5.69141 5.85297 5.95631 6.00645 6.08080 6.13943
6.23957 6.32712 6.51675 6.56246 6.57513 6.72584 6.91680 6.98008
7.00412 7.12784 7.61072 8.02335 8.29705 9.07024 9.19926 9.65996
10.35686 10.98125
Molecular weight = 260.13amu
Principal moments of inertia in cm(-1)
A = 0.027391 B = 0.005287 C = 0.004652
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1021.972787 B = 5294.352391 C = 6017.567121
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C 0.120 3.880
3 C -0.147 4.147
4 N -0.438 5.438
5 C -0.331 4.331
6 H 0.080 0.920
7 C 0.060 3.940
8 N -0.814 5.814
9 Si 0.910 3.090
10 H -0.279 1.279
11 H -0.286 1.286
12 H -0.273 1.273
13 C 0.482 3.518
14 O -0.525 6.525
15 C -0.143 4.143
16 C -0.100 4.100
17 C -0.086 4.086
18 C -0.074 4.074
19 C -0.170 4.170
20 C 0.080 3.920
21 N -0.483 5.483
22 C 0.097 3.903
23 H 0.062 0.938
24 H 0.048 0.952
25 H 0.050 0.950
26 H 0.067 0.933
27 H 0.049 0.951
28 H 0.043 0.957
29 H 0.066 0.934
30 H 0.262 0.738
31 H 0.114 0.886
32 H 0.132 0.868
33 H 0.136 0.864
34 H 0.132 0.868
35 H 0.151 0.849
36 H 0.157 0.843
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.224 -4.608 -11.138 12.055
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C 0.016 3.984
3 C -0.206 4.206
4 N -0.159 5.159
5 C -0.458 4.458
6 H 0.098 0.902
7 C -0.152 4.152
8 N -0.447 5.447
9 Si 0.738 3.262
10 H -0.205 1.205
11 H -0.212 1.212
12 H -0.198 1.198
13 C 0.272 3.728
14 O -0.404 6.404
15 C -0.165 4.165
16 C -0.122 4.122
17 C -0.088 4.088
18 C -0.099 4.099
19 C -0.190 4.190
20 C -0.077 4.077
21 N -0.191 5.191
22 C -0.061 4.061
23 H 0.081 0.919
24 H 0.067 0.933
25 H 0.070 0.930
26 H 0.085 0.915
27 H 0.068 0.932
28 H 0.062 0.938
29 H 0.085 0.915
30 H 0.073 0.927
31 H 0.132 0.868
32 H 0.150 0.850
33 H 0.154 0.846
34 H 0.150 0.850
35 H 0.168 0.832
36 H 0.174 0.826
Dipole moment (debyes) X Y Z Total
from point charges 0.343 -4.380 -11.267 12.093
hybrid contribution 0.203 -0.204 1.550 1.576
sum 0.546 -4.584 -9.718 10.758
Atomic orbital electron populations
1.22040 0.96326 1.01674 1.00971 1.21160 0.93902 0.93609 0.89773
1.21994 1.00758 0.96470 1.01337 1.43243 1.41872 1.26197 1.04601
1.18975 0.92698 1.47966 0.86199 0.90228 1.25390 0.94726 0.95382
0.99665 1.69883 1.00722 1.41199 1.32943 0.86228 0.78232 0.78179
0.83604 1.20462 1.21217 1.19762 1.17828 0.84984 0.82294 0.87675
1.90663 1.53247 1.57814 1.38632 1.23689 0.97264 0.96595 0.98933
1.21911 0.98507 0.97768 0.93965 1.20201 0.97737 0.95808 0.95013
1.21799 0.95423 0.94892 0.97820 1.22033 1.01913 1.01611 0.93457
1.22733 0.94344 0.91585 0.99007 1.67583 1.12103 1.13025 1.26393
1.23103 0.97287 0.98834 0.86842 0.91940 0.93328 0.93043 0.91475
0.93165 0.93808 0.91474 0.92725 0.86842 0.85007 0.84608 0.84967
0.83153 0.82556
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.55 8.91 37.16 0.33 -2.22 16
2 C 0.12 2.31 3.15 -67.93 -0.21 2.10 16
3 C -0.15 -2.72 9.30 37.16 0.35 -2.37 16
4 N -0.44 -10.68 2.43 -109.37 -0.27 -10.95 16
5 C -0.33 -8.79 7.93 -15.05 -0.12 -8.91 16
6 H 0.08 2.04 6.94 -52.49 -0.36 1.68 16
7 C 0.06 1.64 4.71 -17.44 -0.08 1.56 16
8 N -0.81 -23.92 11.06 55.50 0.61 -23.31 16
9 Si 0.91 21.38 29.56 -169.99 -5.03 16.36 16
10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16
12 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16
13 C 0.48 12.25 6.94 -13.05 -0.09 12.16 16
14 O -0.52 -15.52 13.56 5.14 0.07 -15.45 16
15 C -0.14 -2.86 8.73 -37.53 -0.33 -3.18 16
16 C -0.10 -1.82 9.48 -37.13 -0.35 -2.17 16
17 C -0.09 -1.31 5.89 -104.91 -0.62 -1.93 16
18 C -0.07 -0.95 9.95 -38.79 -0.39 -1.34 16
19 C -0.17 -1.88 10.09 -39.51 -0.40 -2.28 16
20 C 0.08 0.95 11.17 -17.44 -0.19 0.75 16
21 N -0.48 -6.99 10.34 -12.82 -0.13 -7.12 16
22 C 0.10 1.44 10.59 -17.02 -0.18 1.26 16
23 H 0.06 1.10 7.24 -51.93 -0.38 0.73 16
24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16
25 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16
26 H 0.07 1.15 5.18 -51.93 -0.27 0.88 16
27 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16
28 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16
29 H 0.07 1.36 7.64 -51.93 -0.40 0.96 16
30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16
31 H 0.11 1.91 3.84 -52.49 -0.20 1.71 16
32 H 0.13 2.56 7.53 -52.49 -0.40 2.17 16
33 H 0.14 1.52 8.06 -52.48 -0.42 1.09 16
34 H 0.13 1.04 8.06 -52.48 -0.42 0.61 16
35 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16
36 H 0.16 2.13 6.19 -52.49 -0.32 1.81 16
LS Contribution 304.72 15.07 4.59 4.59
Total: -1.00 -32.77 304.72 -6.86 -39.63
By element:
Atomic # 1 Polarization: 7.25 SS G_CDS: -4.42 Total: 2.83 kcal
Atomic # 6 Polarization: -4.29 SS G_CDS: -2.29 Total: -6.58 kcal
Atomic # 7 Polarization: -41.59 SS G_CDS: 0.21 Total: -41.37 kcal
Atomic # 8 Polarization: -15.52 SS G_CDS: 0.07 Total: -15.45 kcal
Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.36 kcal
Total LS contribution 4.59 Total: 4.59 kcal
Total: -32.77 -6.86 -39.63 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000126729187.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 72.001 kcal
(2) G-P(sol) polarization free energy of solvation -32.770 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.231 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.857 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.627 kcal
(6) G-S(sol) free energy of system = (1) + (5) 32.374 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds