Wall clock time and date at job start Mon Mar 30 2020 04:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47072 * 2 1 4 4 N 1.46495 * 109.47475 * 120.00194 * 2 1 3 5 5 C 1.36716 * 120.00217 * 305.38985 * 4 2 1 6 6 H 1.08001 * 119.99820 * 46.68503 * 5 4 2 7 7 C 1.39123 * 120.00025 * 226.68832 * 5 4 2 8 8 N 1.31317 * 120.00091 * 8.28550 * 7 5 4 9 9 Si 1.86796 * 119.99805 * 188.28272 * 7 5 4 10 10 H 1.48504 * 109.47012 * 90.00433 * 9 7 5 11 11 H 1.48507 * 109.47330 * 209.99892 * 9 7 5 12 12 H 1.48501 * 109.47509 * 329.99852 * 9 7 5 13 13 C 1.34780 * 120.00162 * 125.39219 * 4 2 1 14 14 O 1.21751 * 120.00388 * 175.11308 * 13 4 2 15 15 C 1.46229 * 119.99778 * 355.38291 * 13 4 2 16 16 C 1.34970 * 120.00110 * 185.17578 * 15 13 4 17 17 C 1.47143 * 120.00216 * 180.02562 * 16 15 13 18 18 C 1.40303 * 120.59321 * 179.97438 * 17 16 15 19 19 C 1.38270 * 118.26664 * 179.97438 * 18 17 16 20 20 C 1.38399 * 119.34084 * 0.02562 * 19 18 17 21 21 N 1.31947 * 121.14510 * 0.02562 * 20 19 18 22 22 C 1.31657 * 121.90905 * 359.68009 * 21 20 19 23 23 H 1.09001 * 109.47157 * 305.20376 * 1 2 3 24 24 H 1.08997 * 109.47647 * 65.20437 * 1 2 3 25 25 H 1.09003 * 109.46622 * 185.20573 * 1 2 3 26 26 H 1.08998 * 109.47364 * 240.00704 * 2 1 3 27 27 H 1.08995 * 109.47812 * 184.80921 * 3 2 1 28 28 H 1.08997 * 109.47155 * 304.81408 * 3 2 1 29 29 H 1.09002 * 109.46642 * 64.80601 * 3 2 1 30 30 H 0.97004 * 120.00166 * 179.97438 * 8 7 5 31 31 H 1.07999 * 119.99831 * 5.17191 * 15 13 4 32 32 H 1.07999 * 120.00072 * 0.02562 * 16 15 13 33 33 H 1.08004 * 120.86501 * 359.96024 * 18 17 16 34 34 H 1.08005 * 120.33163 * 180.02562 * 19 18 17 35 35 H 1.08002 * 119.42887 * 179.97438 * 20 19 18 36 36 H 1.07989 * 119.74289 * 180.28744 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.5998 -0.2913 2.4348 6 1 0.5510 -0.1099 2.6180 7 6 2.5249 -0.1186 3.4595 8 7 3.8108 -0.1793 3.2002 9 14 1.9379 0.1997 5.2040 10 1 1.7670 -1.0942 5.9125 11 1 2.9410 1.0277 5.9206 12 1 0.6390 0.9186 5.1658 13 6 2.8804 -1.7196 1.0754 14 8 3.3553 -2.2360 2.0704 15 6 3.2498 -2.2121 -0.2510 16 6 4.0296 -3.3072 -0.3713 17 6 4.4018 -3.8025 -1.7059 18 6 5.2122 -4.9393 -1.8453 19 6 5.5320 -5.3630 -3.1220 20 6 5.0481 -4.6593 -4.2112 21 7 4.2884 -3.5924 -4.0515 22 6 3.9503 -3.1511 -2.8581 23 1 -0.3633 0.5924 0.8397 24 1 -0.3634 0.4310 -0.9329 25 1 -0.3633 -1.0235 0.0932 26 1 1.8933 -0.5137 -0.8900 27 1 3.1265 1.4439 -0.0861 28 1 1.6079 1.9807 -0.8437 29 1 1.7486 1.9309 0.9299 30 1 4.4559 -0.0585 3.9145 31 1 2.8987 -1.6996 -1.1344 32 1 4.3803 -3.8200 0.5121 33 1 5.5769 -5.4695 -0.9779 34 1 6.1532 -6.2343 -3.2680 35 1 5.2973 -4.9887 -5.2091 36 1 3.3228 -2.2768 -2.7681 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126729187.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:48 Heat of formation + Delta-G solvation = 32.374417 kcal Electronic energy + Delta-G solvation = -19040.300419 eV Core-core repulsion = 16104.653697 eV Total energy + Delta-G solvation = -2935.646722 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.94235 -38.49625 -35.29491 -33.97240 -32.40101 -32.03985 -30.01246 -29.33017 -26.46646 -25.57624 -23.85128 -23.28682 -21.17612 -20.47827 -18.43849 -17.37581 -16.67267 -15.80832 -15.59708 -15.11585 -14.61471 -13.98214 -13.85473 -13.59914 -13.38141 -13.11550 -13.01170 -12.89711 -12.05160 -11.87089 -11.61112 -11.52382 -11.34797 -11.01692 -10.88103 -10.71775 -10.42564 -10.34499 -10.18054 -9.86402 -9.53822 -9.36322 -8.78464 -8.02373 -7.96608 -7.05673 -6.05225 -3.87626 0.77574 1.31644 2.55229 3.30107 3.35332 3.37324 3.99040 4.26542 4.47240 4.79600 4.86555 4.90493 5.00193 5.08991 5.15084 5.32707 5.40015 5.58261 5.69141 5.85297 5.95631 6.00645 6.08080 6.13943 6.23957 6.32712 6.51675 6.56246 6.57513 6.72584 6.91680 6.98008 7.00412 7.12784 7.61072 8.02335 8.29705 9.07024 9.19926 9.65996 10.35686 10.98125 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.027391 B = 0.005287 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.972787 B = 5294.352391 C = 6017.567121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.120 3.880 3 C -0.147 4.147 4 N -0.438 5.438 5 C -0.331 4.331 6 H 0.080 0.920 7 C 0.060 3.940 8 N -0.814 5.814 9 Si 0.910 3.090 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.273 1.273 13 C 0.482 3.518 14 O -0.525 6.525 15 C -0.143 4.143 16 C -0.100 4.100 17 C -0.086 4.086 18 C -0.074 4.074 19 C -0.170 4.170 20 C 0.080 3.920 21 N -0.483 5.483 22 C 0.097 3.903 23 H 0.062 0.938 24 H 0.048 0.952 25 H 0.050 0.950 26 H 0.067 0.933 27 H 0.049 0.951 28 H 0.043 0.957 29 H 0.066 0.934 30 H 0.262 0.738 31 H 0.114 0.886 32 H 0.132 0.868 33 H 0.136 0.864 34 H 0.132 0.868 35 H 0.151 0.849 36 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.224 -4.608 -11.138 12.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.016 3.984 3 C -0.206 4.206 4 N -0.159 5.159 5 C -0.458 4.458 6 H 0.098 0.902 7 C -0.152 4.152 8 N -0.447 5.447 9 Si 0.738 3.262 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.198 1.198 13 C 0.272 3.728 14 O -0.404 6.404 15 C -0.165 4.165 16 C -0.122 4.122 17 C -0.088 4.088 18 C -0.099 4.099 19 C -0.190 4.190 20 C -0.077 4.077 21 N -0.191 5.191 22 C -0.061 4.061 23 H 0.081 0.919 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.132 0.868 32 H 0.150 0.850 33 H 0.154 0.846 34 H 0.150 0.850 35 H 0.168 0.832 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 0.343 -4.380 -11.267 12.093 hybrid contribution 0.203 -0.204 1.550 1.576 sum 0.546 -4.584 -9.718 10.758 Atomic orbital electron populations 1.22040 0.96326 1.01674 1.00971 1.21160 0.93902 0.93609 0.89773 1.21994 1.00758 0.96470 1.01337 1.43243 1.41872 1.26197 1.04601 1.18975 0.92698 1.47966 0.86199 0.90228 1.25390 0.94726 0.95382 0.99665 1.69883 1.00722 1.41199 1.32943 0.86228 0.78232 0.78179 0.83604 1.20462 1.21217 1.19762 1.17828 0.84984 0.82294 0.87675 1.90663 1.53247 1.57814 1.38632 1.23689 0.97264 0.96595 0.98933 1.21911 0.98507 0.97768 0.93965 1.20201 0.97737 0.95808 0.95013 1.21799 0.95423 0.94892 0.97820 1.22033 1.01913 1.01611 0.93457 1.22733 0.94344 0.91585 0.99007 1.67583 1.12103 1.13025 1.26393 1.23103 0.97287 0.98834 0.86842 0.91940 0.93328 0.93043 0.91475 0.93165 0.93808 0.91474 0.92725 0.86842 0.85007 0.84608 0.84967 0.83153 0.82556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 8.91 37.16 0.33 -2.22 16 2 C 0.12 2.31 3.15 -67.93 -0.21 2.10 16 3 C -0.15 -2.72 9.30 37.16 0.35 -2.37 16 4 N -0.44 -10.68 2.43 -109.37 -0.27 -10.95 16 5 C -0.33 -8.79 7.93 -15.05 -0.12 -8.91 16 6 H 0.08 2.04 6.94 -52.49 -0.36 1.68 16 7 C 0.06 1.64 4.71 -17.44 -0.08 1.56 16 8 N -0.81 -23.92 11.06 55.50 0.61 -23.31 16 9 Si 0.91 21.38 29.56 -169.99 -5.03 16.36 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 13 C 0.48 12.25 6.94 -13.05 -0.09 12.16 16 14 O -0.52 -15.52 13.56 5.14 0.07 -15.45 16 15 C -0.14 -2.86 8.73 -37.53 -0.33 -3.18 16 16 C -0.10 -1.82 9.48 -37.13 -0.35 -2.17 16 17 C -0.09 -1.31 5.89 -104.91 -0.62 -1.93 16 18 C -0.07 -0.95 9.95 -38.79 -0.39 -1.34 16 19 C -0.17 -1.88 10.09 -39.51 -0.40 -2.28 16 20 C 0.08 0.95 11.17 -17.44 -0.19 0.75 16 21 N -0.48 -6.99 10.34 -12.82 -0.13 -7.12 16 22 C 0.10 1.44 10.59 -17.02 -0.18 1.26 16 23 H 0.06 1.10 7.24 -51.93 -0.38 0.73 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.07 1.15 5.18 -51.93 -0.27 0.88 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 1.36 7.64 -51.93 -0.40 0.96 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.11 1.91 3.84 -52.49 -0.20 1.71 16 32 H 0.13 2.56 7.53 -52.49 -0.40 2.17 16 33 H 0.14 1.52 8.06 -52.48 -0.42 1.09 16 34 H 0.13 1.04 8.06 -52.48 -0.42 0.61 16 35 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 36 H 0.16 2.13 6.19 -52.49 -0.32 1.81 16 LS Contribution 304.72 15.07 4.59 4.59 Total: -1.00 -32.77 304.72 -6.86 -39.63 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -4.42 Total: 2.83 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: -2.29 Total: -6.58 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: 0.21 Total: -41.37 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: 0.07 Total: -15.45 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.77 -6.86 -39.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126729187.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.001 kcal (2) G-P(sol) polarization free energy of solvation -32.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds