Wall clock time and date at job start Mon Mar 30 2020 04:36:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.53006 * 109.47072 * 2 1
4 4 N 1.46495 * 109.47475 * 120.00194 * 2 1 3
5 5 C 1.36716 * 120.00217 * 305.38985 * 4 2 1
6 6 H 1.08001 * 119.99820 * 46.68503 * 5 4 2
7 7 C 1.39123 * 120.00025 * 226.68832 * 5 4 2
8 8 N 1.31317 * 120.00091 * 8.28550 * 7 5 4
9 9 Si 1.86796 * 119.99805 * 188.28272 * 7 5 4
10 10 H 1.48504 * 109.47012 * 90.00433 * 9 7 5
11 11 H 1.48507 * 109.47330 * 209.99892 * 9 7 5
12 12 H 1.48501 * 109.47509 * 329.99852 * 9 7 5
13 13 C 1.34780 * 120.00162 * 125.39219 * 4 2 1
14 14 O 1.21751 * 120.00388 * 175.11308 * 13 4 2
15 15 C 1.46229 * 119.99778 * 355.38291 * 13 4 2
16 16 C 1.34970 * 120.00110 * 185.17578 * 15 13 4
17 17 C 1.47143 * 120.00216 * 180.02562 * 16 15 13
18 18 C 1.40303 * 120.59321 * 179.97438 * 17 16 15
19 19 C 1.38270 * 118.26664 * 179.97438 * 18 17 16
20 20 C 1.38399 * 119.34084 * 0.02562 * 19 18 17
21 21 N 1.31947 * 121.14510 * 0.02562 * 20 19 18
22 22 C 1.31657 * 121.90905 * 359.68009 * 21 20 19
23 23 H 1.09001 * 109.47157 * 305.20376 * 1 2 3
24 24 H 1.08997 * 109.47647 * 65.20437 * 1 2 3
25 25 H 1.09003 * 109.46622 * 185.20573 * 1 2 3
26 26 H 1.08998 * 109.47364 * 240.00704 * 2 1 3
27 27 H 1.08995 * 109.47812 * 184.80921 * 3 2 1
28 28 H 1.08997 * 109.47155 * 304.81408 * 3 2 1
29 29 H 1.09002 * 109.46642 * 64.80601 * 3 2 1
30 30 H 0.97004 * 120.00166 * 179.97438 * 8 7 5
31 31 H 1.07999 * 119.99831 * 5.17191 * 15 13 4
32 32 H 1.07999 * 120.00072 * 0.02562 * 16 15 13
33 33 H 1.08004 * 120.86501 * 359.96024 * 18 17 16
34 34 H 1.08005 * 120.33163 * 180.02562 * 19 18 17
35 35 H 1.08002 * 119.42887 * 179.97438 * 20 19 18
36 36 H 1.07989 * 119.74289 * 180.28744 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 7 2.0184 -0.6906 1.1961
5 6 1.5998 -0.2913 2.4348
6 1 0.5510 -0.1099 2.6180
7 6 2.5249 -0.1186 3.4595
8 7 3.8108 -0.1793 3.2002
9 14 1.9379 0.1997 5.2040
10 1 1.7670 -1.0942 5.9125
11 1 2.9410 1.0277 5.9206
12 1 0.6390 0.9186 5.1658
13 6 2.8804 -1.7196 1.0754
14 8 3.3553 -2.2360 2.0704
15 6 3.2498 -2.2121 -0.2510
16 6 4.0296 -3.3072 -0.3713
17 6 4.4018 -3.8025 -1.7059
18 6 5.2122 -4.9393 -1.8453
19 6 5.5320 -5.3630 -3.1220
20 6 5.0481 -4.6593 -4.2112
21 7 4.2884 -3.5924 -4.0515
22 6 3.9503 -3.1511 -2.8581
23 1 -0.3633 0.5924 0.8397
24 1 -0.3634 0.4310 -0.9329
25 1 -0.3633 -1.0235 0.0932
26 1 1.8933 -0.5137 -0.8900
27 1 3.1265 1.4439 -0.0861
28 1 1.6079 1.9807 -0.8437
29 1 1.7486 1.9309 0.9299
30 1 4.4559 -0.0585 3.9145
31 1 2.8987 -1.6996 -1.1344
32 1 4.3803 -3.8200 0.5121
33 1 5.5769 -5.4695 -0.9779
34 1 6.1532 -6.2343 -3.2680
35 1 5.2973 -4.9887 -5.2091
36 1 3.3228 -2.2768 -2.7681
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000126729187.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:36:48
Heat of formation + Delta-G solvation = 11.812848 kcal
Electronic energy + Delta-G solvation = -19041.192035 eV
Core-core repulsion = 16104.653697 eV
Total energy + Delta-G solvation = -2936.538338 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 260.127 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-41.03209 -40.26869 -37.03501 -35.41525 -34.21005 -33.15706 -31.75319 -30.68002
-27.89698 -27.34924 -25.21182 -24.41591 -22.69729 -22.04341 -20.09422 -18.73155
-17.95268 -17.53293 -16.87877 -16.83795 -15.99529 -15.65367 -15.27871 -14.86620
-14.81272 -14.71473 -14.51688 -13.96405 -13.66291 -13.50573 -13.13460 -13.05754
-12.86278 -12.64007 -12.52154 -12.42264 -12.08577 -11.93343 -11.63966 -11.42051
-10.79451 -10.55566 -10.42168 -9.98833 -9.32084 -9.00576 -8.08922 -5.95749
-0.41395 0.31517 1.18225 1.39812 1.44773 1.51223 2.36256 2.86060
3.05611 3.18338 3.32183 3.49957 3.78900 3.92101 3.97985 4.04245
4.11996 4.29371 4.45516 4.50146 4.61168 4.66422 4.86485 4.93008
5.04001 5.08668 5.11537 5.12675 5.18047 5.46525 5.49771 5.51757
5.59694 5.62981 5.77480 6.28191 6.99793 7.08799 7.28852 7.73760
8.44554 8.94691
Molecular weight = 260.13amu
Principal moments of inertia in cm(-1)
A = 0.027391 B = 0.005287 C = 0.004652
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1021.972787 B = 5294.352391 C = 6017.567121
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C 0.110 3.890
3 C -0.139 4.139
4 N -0.452 5.452
5 C -0.343 4.343
6 H 0.083 0.917
7 C 0.007 3.993
8 N -0.858 5.858
9 Si 0.969 3.031
10 H -0.290 1.290
11 H -0.285 1.285
12 H -0.252 1.252
13 C 0.471 3.529
14 O -0.583 6.583
15 C -0.175 4.175
16 C -0.064 4.064
17 C -0.117 4.117
18 C -0.072 4.072
19 C -0.161 4.161
20 C 0.088 3.912
21 N -0.505 5.505
22 C 0.096 3.904
23 H 0.048 0.952
24 H 0.088 0.912
25 H 0.044 0.956
26 H 0.091 0.909
27 H 0.029 0.971
28 H 0.087 0.913
29 H 0.041 0.959
30 H 0.254 0.746
31 H 0.145 0.855
32 H 0.112 0.888
33 H 0.150 0.850
34 H 0.173 0.827
35 H 0.188 0.812
36 H 0.162 0.838
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.006 -5.555 -14.091 15.146
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C 0.007 3.993
3 C -0.197 4.197
4 N -0.173 5.173
5 C -0.471 4.471
6 H 0.101 0.899
7 C -0.199 4.199
8 N -0.494 5.494
9 Si 0.795 3.205
10 H -0.216 1.216
11 H -0.210 1.210
12 H -0.175 1.175
13 C 0.262 3.738
14 O -0.466 6.466
15 C -0.196 4.196
16 C -0.085 4.085
17 C -0.119 4.119
18 C -0.097 4.097
19 C -0.181 4.181
20 C -0.068 4.068
21 N -0.214 5.214
22 C -0.061 4.061
23 H 0.067 0.933
24 H 0.107 0.893
25 H 0.064 0.936
26 H 0.109 0.891
27 H 0.048 0.952
28 H 0.105 0.895
29 H 0.060 0.940
30 H 0.064 0.936
31 H 0.162 0.838
32 H 0.130 0.870
33 H 0.168 0.832
34 H 0.191 0.809
35 H 0.205 0.795
36 H 0.179 0.821
Dipole moment (debyes) X Y Z Total
from point charges 0.071 -5.295 -14.256 15.208
hybrid contribution 0.364 -0.133 2.194 2.228
sum 0.434 -5.428 -12.061 13.234
Atomic orbital electron populations
1.21964 0.94178 1.01438 1.02528 1.21495 0.95604 0.93661 0.88523
1.21917 0.99624 0.96323 1.01817 1.43502 1.41672 1.26502 1.05580
1.19225 0.92806 1.47402 0.87668 0.89892 1.26214 0.94804 0.95422
1.03452 1.70034 1.01809 1.44155 1.33366 0.85312 0.78634 0.77510
0.79076 1.21625 1.21039 1.17527 1.18674 0.84093 0.81905 0.89101
1.90608 1.55287 1.59736 1.41014 1.23387 1.00562 0.98478 0.97129
1.21983 0.95516 0.95906 0.95103 1.20054 1.00521 0.97906 0.93401
1.22130 0.94137 0.93829 0.99651 1.22446 1.01308 1.02322 0.91994
1.23480 0.92131 0.90100 1.01082 1.67669 1.13390 1.14450 1.25874
1.23195 0.97080 0.98907 0.86891 0.93309 0.89294 0.93642 0.89148
0.95191 0.89468 0.93991 0.93644 0.83793 0.87027 0.83213 0.80947
0.79526 0.82078
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -4.57 8.91 71.98 0.64 -3.93 16
2 C 0.11 4.17 3.15 44.99 0.14 4.31 16
3 C -0.14 -5.04 9.30 71.98 0.67 -4.37 16
4 N -0.45 -22.67 2.43 -618.13 -1.50 -24.18 16
5 C -0.34 -18.82 7.93 84.14 0.67 -18.15 16
6 H 0.08 4.36 6.94 -2.91 -0.02 4.34 16
7 C 0.01 0.42 4.71 84.98 0.40 0.82 16
8 N -0.86 -53.16 11.06 21.69 0.24 -52.92 16
9 Si 0.97 45.54 29.56 68.60 2.03 47.57 16
10 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16
11 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16
12 H -0.25 -10.79 7.11 99.48 0.71 -10.08 16
13 C 0.47 24.88 6.94 86.32 0.60 25.48 16
14 O -0.58 -36.49 13.56 -4.51 -0.06 -36.55 16
15 C -0.17 -7.07 8.73 23.60 0.21 -6.86 16
16 C -0.06 -2.34 9.48 23.86 0.23 -2.11 16
17 C -0.12 -3.40 5.89 -20.05 -0.12 -3.52 16
18 C -0.07 -1.66 9.95 22.78 0.23 -1.44 16
19 C -0.16 -2.83 10.09 22.32 0.23 -2.60 16
20 C 0.09 1.71 11.17 84.71 0.95 2.65 16
21 N -0.51 -13.04 10.34 -194.47 -2.01 -15.05 16
22 C 0.10 2.66 10.59 85.11 0.90 3.56 16
23 H 0.05 1.67 7.24 -2.39 -0.02 1.66 16
24 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16
25 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16
26 H 0.09 2.96 5.18 -2.39 -0.01 2.94 16
27 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16
28 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16
29 H 0.04 1.71 7.64 -2.39 -0.02 1.69 16
30 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16
31 H 0.14 4.75 3.84 -2.91 -0.01 4.74 16
32 H 0.11 4.53 7.53 -2.91 -0.02 4.50 16
33 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16
34 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16
35 H 0.19 2.18 8.06 -2.91 -0.02 2.16 16
36 H 0.16 4.11 6.19 -2.92 -0.02 4.09 16
Total: -1.00 -76.25 304.72 5.51 -70.75
By element:
Atomic # 1 Polarization: 15.46 SS G_CDS: 1.08 Total: 16.54 kcal
Atomic # 6 Polarization: -11.89 SS G_CDS: 5.73 Total: -6.16 kcal
Atomic # 7 Polarization: -88.88 SS G_CDS: -3.28 Total: -92.15 kcal
Atomic # 8 Polarization: -36.49 SS G_CDS: -0.06 Total: -36.55 kcal
Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal
Total: -76.25 5.51 -70.75 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000126729187.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 82.558 kcal
(2) G-P(sol) polarization free energy of solvation -76.252 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.306 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.507 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.745 kcal
(6) G-S(sol) free energy of system = (1) + (5) 11.813 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds