Wall clock time and date at job start Mon Mar 30 2020 04:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47072 * 2 1 4 4 N 1.46495 * 109.47475 * 120.00194 * 2 1 3 5 5 C 1.36716 * 120.00217 * 305.38985 * 4 2 1 6 6 H 1.08001 * 119.99820 * 46.68503 * 5 4 2 7 7 C 1.39123 * 120.00025 * 226.68832 * 5 4 2 8 8 N 1.31317 * 120.00091 * 8.28550 * 7 5 4 9 9 Si 1.86796 * 119.99805 * 188.28272 * 7 5 4 10 10 H 1.48504 * 109.47012 * 90.00433 * 9 7 5 11 11 H 1.48507 * 109.47330 * 209.99892 * 9 7 5 12 12 H 1.48501 * 109.47509 * 329.99852 * 9 7 5 13 13 C 1.34780 * 120.00162 * 125.39219 * 4 2 1 14 14 O 1.21751 * 120.00388 * 175.11308 * 13 4 2 15 15 C 1.46229 * 119.99778 * 355.38291 * 13 4 2 16 16 C 1.34970 * 120.00110 * 185.17578 * 15 13 4 17 17 C 1.47143 * 120.00216 * 180.02562 * 16 15 13 18 18 C 1.40303 * 120.59321 * 179.97438 * 17 16 15 19 19 C 1.38270 * 118.26664 * 179.97438 * 18 17 16 20 20 C 1.38399 * 119.34084 * 0.02562 * 19 18 17 21 21 N 1.31947 * 121.14510 * 0.02562 * 20 19 18 22 22 C 1.31657 * 121.90905 * 359.68009 * 21 20 19 23 23 H 1.09001 * 109.47157 * 305.20376 * 1 2 3 24 24 H 1.08997 * 109.47647 * 65.20437 * 1 2 3 25 25 H 1.09003 * 109.46622 * 185.20573 * 1 2 3 26 26 H 1.08998 * 109.47364 * 240.00704 * 2 1 3 27 27 H 1.08995 * 109.47812 * 184.80921 * 3 2 1 28 28 H 1.08997 * 109.47155 * 304.81408 * 3 2 1 29 29 H 1.09002 * 109.46642 * 64.80601 * 3 2 1 30 30 H 0.97004 * 120.00166 * 179.97438 * 8 7 5 31 31 H 1.07999 * 119.99831 * 5.17191 * 15 13 4 32 32 H 1.07999 * 120.00072 * 0.02562 * 16 15 13 33 33 H 1.08004 * 120.86501 * 359.96024 * 18 17 16 34 34 H 1.08005 * 120.33163 * 180.02562 * 19 18 17 35 35 H 1.08002 * 119.42887 * 179.97438 * 20 19 18 36 36 H 1.07989 * 119.74289 * 180.28744 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.5998 -0.2913 2.4348 6 1 0.5510 -0.1099 2.6180 7 6 2.5249 -0.1186 3.4595 8 7 3.8108 -0.1793 3.2002 9 14 1.9379 0.1997 5.2040 10 1 1.7670 -1.0942 5.9125 11 1 2.9410 1.0277 5.9206 12 1 0.6390 0.9186 5.1658 13 6 2.8804 -1.7196 1.0754 14 8 3.3553 -2.2360 2.0704 15 6 3.2498 -2.2121 -0.2510 16 6 4.0296 -3.3072 -0.3713 17 6 4.4018 -3.8025 -1.7059 18 6 5.2122 -4.9393 -1.8453 19 6 5.5320 -5.3630 -3.1220 20 6 5.0481 -4.6593 -4.2112 21 7 4.2884 -3.5924 -4.0515 22 6 3.9503 -3.1511 -2.8581 23 1 -0.3633 0.5924 0.8397 24 1 -0.3634 0.4310 -0.9329 25 1 -0.3633 -1.0235 0.0932 26 1 1.8933 -0.5137 -0.8900 27 1 3.1265 1.4439 -0.0861 28 1 1.6079 1.9807 -0.8437 29 1 1.7486 1.9309 0.9299 30 1 4.4559 -0.0585 3.9145 31 1 2.8987 -1.6996 -1.1344 32 1 4.3803 -3.8200 0.5121 33 1 5.5769 -5.4695 -0.9779 34 1 6.1532 -6.2343 -3.2680 35 1 5.2973 -4.9887 -5.2091 36 1 3.3228 -2.2768 -2.7681 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126729187.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:48 Heat of formation + Delta-G solvation = 11.812848 kcal Electronic energy + Delta-G solvation = -19041.192035 eV Core-core repulsion = 16104.653697 eV Total energy + Delta-G solvation = -2936.538338 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.03209 -40.26869 -37.03501 -35.41525 -34.21005 -33.15706 -31.75319 -30.68002 -27.89698 -27.34924 -25.21182 -24.41591 -22.69729 -22.04341 -20.09422 -18.73155 -17.95268 -17.53293 -16.87877 -16.83795 -15.99529 -15.65367 -15.27871 -14.86620 -14.81272 -14.71473 -14.51688 -13.96405 -13.66291 -13.50573 -13.13460 -13.05754 -12.86278 -12.64007 -12.52154 -12.42264 -12.08577 -11.93343 -11.63966 -11.42051 -10.79451 -10.55566 -10.42168 -9.98833 -9.32084 -9.00576 -8.08922 -5.95749 -0.41395 0.31517 1.18225 1.39812 1.44773 1.51223 2.36256 2.86060 3.05611 3.18338 3.32183 3.49957 3.78900 3.92101 3.97985 4.04245 4.11996 4.29371 4.45516 4.50146 4.61168 4.66422 4.86485 4.93008 5.04001 5.08668 5.11537 5.12675 5.18047 5.46525 5.49771 5.51757 5.59694 5.62981 5.77480 6.28191 6.99793 7.08799 7.28852 7.73760 8.44554 8.94691 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.027391 B = 0.005287 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.972787 B = 5294.352391 C = 6017.567121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.110 3.890 3 C -0.139 4.139 4 N -0.452 5.452 5 C -0.343 4.343 6 H 0.083 0.917 7 C 0.007 3.993 8 N -0.858 5.858 9 Si 0.969 3.031 10 H -0.290 1.290 11 H -0.285 1.285 12 H -0.252 1.252 13 C 0.471 3.529 14 O -0.583 6.583 15 C -0.175 4.175 16 C -0.064 4.064 17 C -0.117 4.117 18 C -0.072 4.072 19 C -0.161 4.161 20 C 0.088 3.912 21 N -0.505 5.505 22 C 0.096 3.904 23 H 0.048 0.952 24 H 0.088 0.912 25 H 0.044 0.956 26 H 0.091 0.909 27 H 0.029 0.971 28 H 0.087 0.913 29 H 0.041 0.959 30 H 0.254 0.746 31 H 0.145 0.855 32 H 0.112 0.888 33 H 0.150 0.850 34 H 0.173 0.827 35 H 0.188 0.812 36 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.006 -5.555 -14.091 15.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.007 3.993 3 C -0.197 4.197 4 N -0.173 5.173 5 C -0.471 4.471 6 H 0.101 0.899 7 C -0.199 4.199 8 N -0.494 5.494 9 Si 0.795 3.205 10 H -0.216 1.216 11 H -0.210 1.210 12 H -0.175 1.175 13 C 0.262 3.738 14 O -0.466 6.466 15 C -0.196 4.196 16 C -0.085 4.085 17 C -0.119 4.119 18 C -0.097 4.097 19 C -0.181 4.181 20 C -0.068 4.068 21 N -0.214 5.214 22 C -0.061 4.061 23 H 0.067 0.933 24 H 0.107 0.893 25 H 0.064 0.936 26 H 0.109 0.891 27 H 0.048 0.952 28 H 0.105 0.895 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.162 0.838 32 H 0.130 0.870 33 H 0.168 0.832 34 H 0.191 0.809 35 H 0.205 0.795 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 0.071 -5.295 -14.256 15.208 hybrid contribution 0.364 -0.133 2.194 2.228 sum 0.434 -5.428 -12.061 13.234 Atomic orbital electron populations 1.21964 0.94178 1.01438 1.02528 1.21495 0.95604 0.93661 0.88523 1.21917 0.99624 0.96323 1.01817 1.43502 1.41672 1.26502 1.05580 1.19225 0.92806 1.47402 0.87668 0.89892 1.26214 0.94804 0.95422 1.03452 1.70034 1.01809 1.44155 1.33366 0.85312 0.78634 0.77510 0.79076 1.21625 1.21039 1.17527 1.18674 0.84093 0.81905 0.89101 1.90608 1.55287 1.59736 1.41014 1.23387 1.00562 0.98478 0.97129 1.21983 0.95516 0.95906 0.95103 1.20054 1.00521 0.97906 0.93401 1.22130 0.94137 0.93829 0.99651 1.22446 1.01308 1.02322 0.91994 1.23480 0.92131 0.90100 1.01082 1.67669 1.13390 1.14450 1.25874 1.23195 0.97080 0.98907 0.86891 0.93309 0.89294 0.93642 0.89148 0.95191 0.89468 0.93991 0.93644 0.83793 0.87027 0.83213 0.80947 0.79526 0.82078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.57 8.91 71.98 0.64 -3.93 16 2 C 0.11 4.17 3.15 44.99 0.14 4.31 16 3 C -0.14 -5.04 9.30 71.98 0.67 -4.37 16 4 N -0.45 -22.67 2.43 -618.13 -1.50 -24.18 16 5 C -0.34 -18.82 7.93 84.14 0.67 -18.15 16 6 H 0.08 4.36 6.94 -2.91 -0.02 4.34 16 7 C 0.01 0.42 4.71 84.98 0.40 0.82 16 8 N -0.86 -53.16 11.06 21.69 0.24 -52.92 16 9 Si 0.97 45.54 29.56 68.60 2.03 47.57 16 10 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 11 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 12 H -0.25 -10.79 7.11 99.48 0.71 -10.08 16 13 C 0.47 24.88 6.94 86.32 0.60 25.48 16 14 O -0.58 -36.49 13.56 -4.51 -0.06 -36.55 16 15 C -0.17 -7.07 8.73 23.60 0.21 -6.86 16 16 C -0.06 -2.34 9.48 23.86 0.23 -2.11 16 17 C -0.12 -3.40 5.89 -20.05 -0.12 -3.52 16 18 C -0.07 -1.66 9.95 22.78 0.23 -1.44 16 19 C -0.16 -2.83 10.09 22.32 0.23 -2.60 16 20 C 0.09 1.71 11.17 84.71 0.95 2.65 16 21 N -0.51 -13.04 10.34 -194.47 -2.01 -15.05 16 22 C 0.10 2.66 10.59 85.11 0.90 3.56 16 23 H 0.05 1.67 7.24 -2.39 -0.02 1.66 16 24 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 25 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.09 2.96 5.18 -2.39 -0.01 2.94 16 27 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.04 1.71 7.64 -2.39 -0.02 1.69 16 30 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 31 H 0.14 4.75 3.84 -2.91 -0.01 4.74 16 32 H 0.11 4.53 7.53 -2.91 -0.02 4.50 16 33 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 34 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 35 H 0.19 2.18 8.06 -2.91 -0.02 2.16 16 36 H 0.16 4.11 6.19 -2.92 -0.02 4.09 16 Total: -1.00 -76.25 304.72 5.51 -70.75 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: 1.08 Total: 16.54 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: 5.73 Total: -6.16 kcal Atomic # 7 Polarization: -88.88 SS G_CDS: -3.28 Total: -92.15 kcal Atomic # 8 Polarization: -36.49 SS G_CDS: -0.06 Total: -36.55 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -76.25 5.51 -70.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126729187.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.558 kcal (2) G-P(sol) polarization free energy of solvation -76.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds