Wall clock time and date at job start Mon Mar 30 2020 05:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46982 * 2 1 4 4 N 1.46902 * 109.47221 * 120.00055 * 2 1 3 5 5 C 1.46899 * 110.99996 * 183.84636 * 4 2 1 6 6 C 1.50707 * 109.47075 * 289.99364 * 5 4 2 7 7 H 1.07999 * 120.00000 * 1.56947 * 6 5 4 8 8 C 1.37874 * 120.00120 * 181.57536 * 6 5 4 9 9 N 1.31522 * 119.99919 * 359.97438 * 8 6 5 10 10 Si 1.86792 * 120.00094 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47165 * 89.99830 * 10 8 6 12 12 H 1.48500 * 109.47350 * 209.99763 * 10 8 6 13 13 H 1.48501 * 109.47154 * 329.99662 * 10 8 6 14 14 C 1.38515 * 110.99712 * 307.79845 * 4 2 1 15 15 N 1.31913 * 120.28068 * 340.59186 * 14 4 2 16 16 C 1.33720 * 121.15180 * 180.02562 * 15 14 4 17 17 C 1.34728 * 121.47618 * 0.02852 * 16 15 14 18 18 N 1.37111 * 119.93509 * 359.97429 * 17 16 15 19 19 N 1.39758 * 133.54178 * 180.02562 * 18 17 16 20 20 C 1.31603 * 108.82049 * 180.02562 * 19 18 17 21 21 C 1.38614 * 108.98020 * 359.97438 * 20 19 18 22 22 C 1.37251 * 118.93187 * 0.02562 * 18 17 16 23 23 H 1.08997 * 109.47086 * 307.20274 * 1 2 3 24 24 H 1.08998 * 109.46955 * 67.21228 * 1 2 3 25 25 H 1.09012 * 109.46678 * 187.20663 * 1 2 3 26 26 H 1.09000 * 109.47104 * 239.99862 * 2 1 3 27 27 H 1.09004 * 109.47063 * 187.84931 * 3 2 1 28 28 H 1.09004 * 109.47111 * 307.84045 * 3 2 1 29 29 H 1.08995 * 109.47147 * 67.84463 * 3 2 1 30 30 H 1.08997 * 109.47183 * 49.99023 * 5 4 2 31 31 H 1.08998 * 109.47001 * 169.99367 * 5 4 2 32 32 H 0.97000 * 119.99978 * 179.97438 * 9 8 6 33 33 H 1.07998 * 119.26552 * 179.97438 * 16 15 14 34 34 H 1.07995 * 120.03390 * 179.97438 * 17 16 15 35 35 H 1.07998 * 125.50925 * 180.02562 * 20 19 18 36 36 H 1.07999 * 126.20124 * 180.26903 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4852 -0.6329 1.2802 6 6 4.0834 -1.4985 0.2013 7 1 3.4397 -2.0187 -0.4926 8 6 5.4525 -1.6264 0.1000 9 7 6.2365 -0.9926 0.9446 10 14 6.1939 -2.6998 -1.2369 11 1 6.4294 -1.8824 -2.4542 12 1 7.4833 -3.2627 -0.7616 13 1 5.2585 -3.8076 -1.5578 14 6 1.4379 -0.1737 2.3444 15 7 0.8837 1.0232 2.3251 16 6 0.3177 1.5412 3.4203 17 6 0.2905 0.8647 4.5851 18 7 0.8512 -0.3840 4.6644 19 7 0.9824 -1.3167 5.6969 20 6 1.6145 -2.3747 5.2355 21 6 1.9151 -2.1724 3.8975 22 6 1.4342 -0.9224 3.5445 23 1 -0.3633 0.6213 0.8185 24 1 -0.3633 0.3980 -0.9474 25 1 -0.3633 -1.0197 0.1289 26 1 1.8933 -0.5139 -0.8900 27 1 3.1209 1.4457 -0.1404 28 1 1.5667 1.9952 -0.8116 29 1 1.7957 1.9142 0.9517 30 1 3.8151 0.3970 1.1443 31 1 3.8102 -0.9927 2.2565 32 1 7.1996 -1.0828 0.8736 33 1 -0.1269 2.5242 3.3703 34 1 -0.1726 1.3055 5.4555 35 1 1.8587 -3.2582 5.8067 36 1 2.4274 -2.8657 3.2470 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128959751.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:04 Heat of formation + Delta-G solvation = 128.515568 kcal Electronic energy + Delta-G solvation = -19951.253619 eV Core-core repulsion = 17052.068641 eV Total energy + Delta-G solvation = -2899.184978 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.133 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.28517 -40.50116 -38.18057 -34.96693 -33.90276 -33.09471 -31.34645 -29.99697 -28.66854 -27.81821 -25.04809 -24.34259 -24.03937 -22.65045 -21.02208 -19.40861 -18.39141 -17.84944 -17.16592 -16.76833 -16.45590 -16.16969 -16.01590 -15.26338 -15.04393 -14.64798 -14.40305 -14.13721 -14.06387 -13.69410 -13.11679 -12.93207 -12.75912 -12.65586 -12.50885 -12.27925 -12.04659 -11.91990 -11.77195 -11.67731 -11.32479 -10.67270 -10.62935 -10.29285 -9.62472 -8.43538 -8.21338 -6.31183 -0.38096 0.04366 1.17011 1.44068 1.44812 1.56346 1.71034 2.33296 2.45756 2.74143 3.13195 3.31549 3.45457 3.54910 4.09620 4.20366 4.28364 4.35723 4.46907 4.61416 4.64866 4.83926 4.87801 4.94254 4.96284 5.09319 5.12897 5.16483 5.23805 5.44123 5.50688 5.65004 5.68273 5.72955 5.98719 6.02331 6.41554 6.55930 6.78057 6.85493 7.37646 8.89901 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.020571 B = 0.007472 C = 0.006104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.788479 B = 3746.305091 C = 4585.856826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.092 3.908 3 C -0.178 4.178 4 N -0.471 5.471 5 C 0.221 3.779 6 C -0.521 4.521 7 H 0.066 0.934 8 C 0.009 3.991 9 N -0.931 5.931 10 Si 0.968 3.032 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.264 1.264 14 C 0.362 3.638 15 N -0.501 5.501 16 C 0.041 3.959 17 C 0.015 3.985 18 N -0.261 5.261 19 N -0.327 5.327 20 C 0.069 3.931 21 C -0.249 4.249 22 C 0.029 3.971 23 H 0.074 0.926 24 H 0.077 0.923 25 H 0.042 0.958 26 H 0.074 0.926 27 H 0.024 0.976 28 H 0.070 0.930 29 H 0.093 0.907 30 H -0.009 1.009 31 H 0.008 0.992 32 H 0.265 0.735 33 H 0.222 0.778 34 H 0.208 0.792 35 H 0.232 0.768 36 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.050 3.252 4.241 13.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.015 4.015 3 C -0.237 4.237 4 N -0.191 5.191 5 C 0.097 3.903 6 C -0.559 4.559 7 H 0.084 0.916 8 C -0.189 4.189 9 N -0.571 5.571 10 Si 0.792 3.208 11 H -0.199 1.199 12 H -0.209 1.209 13 H -0.188 1.188 14 C 0.109 3.891 15 N -0.220 5.220 16 C -0.100 4.100 17 C -0.111 4.111 18 N -0.032 5.032 19 N -0.154 5.154 20 C -0.105 4.105 21 C -0.282 4.282 22 C -0.095 4.095 23 H 0.092 0.908 24 H 0.095 0.905 25 H 0.061 0.939 26 H 0.092 0.908 27 H 0.043 0.957 28 H 0.089 0.911 29 H 0.111 0.889 30 H 0.009 0.991 31 H 0.026 0.974 32 H 0.074 0.926 33 H 0.238 0.762 34 H 0.225 0.775 35 H 0.248 0.752 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -12.622 3.836 4.680 13.998 hybrid contribution 1.487 -0.725 -0.490 1.726 sum -11.134 3.111 4.191 12.297 Atomic orbital electron populations 1.22002 0.93121 1.01357 1.03408 1.21572 0.95908 0.93175 0.90868 1.22582 0.99269 0.97182 1.04636 1.59439 1.09281 1.50429 0.99905 1.19504 0.78292 0.95465 0.96996 1.21305 0.91619 1.28525 1.14474 0.91581 1.25812 0.97441 0.97180 0.98515 1.70084 1.04523 1.44094 1.38355 0.85403 0.77680 0.78955 0.78743 1.19891 1.20889 1.18780 1.19940 0.93323 0.86869 0.88919 1.68724 1.14231 1.08641 1.30436 1.22878 0.98980 1.02164 0.85959 1.22945 1.02208 0.82665 1.03320 1.46625 1.35810 1.13196 1.07606 1.77707 1.28571 1.00615 1.08541 1.24391 0.94519 0.97684 0.93895 1.21577 1.11900 0.97189 0.97500 1.20113 1.02776 0.97090 0.89528 0.90751 0.90460 0.93883 0.90796 0.95687 0.91132 0.88879 0.99095 0.97421 0.92628 0.76178 0.77529 0.75220 0.83066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.41 8.71 71.98 0.63 -3.78 16 2 C 0.09 3.53 2.84 44.91 0.13 3.66 16 3 C -0.18 -6.60 8.25 71.98 0.59 -6.01 16 4 N -0.47 -20.58 4.53 -680.76 -3.08 -23.66 16 5 C 0.22 11.52 4.40 85.56 0.38 11.90 16 6 C -0.52 -28.53 8.64 25.60 0.22 -28.30 16 7 H 0.07 3.55 7.31 -2.91 -0.02 3.53 16 8 C 0.01 0.51 5.46 84.65 0.46 0.98 16 9 N -0.93 -54.72 13.29 21.45 0.28 -54.44 16 10 Si 0.97 43.22 29.54 68.60 2.03 45.25 16 11 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 12 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 13 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 14 C 0.36 14.31 5.11 133.95 0.68 14.99 16 15 N -0.50 -16.63 4.25 -193.37 -0.82 -17.45 16 16 C 0.04 1.02 11.05 83.60 0.92 1.94 16 17 C 0.01 0.37 11.25 83.06 0.93 1.31 16 18 N -0.26 -8.86 3.97 -187.21 -0.74 -9.60 16 19 N -0.33 -10.86 12.68 -57.43 -0.73 -11.59 16 20 C 0.07 2.13 11.94 84.82 1.01 3.14 16 21 C -0.25 -9.33 10.44 22.43 0.23 -9.10 16 22 C 0.03 1.12 6.37 39.15 0.25 1.37 16 23 H 0.07 2.28 5.62 -2.39 -0.01 2.27 16 24 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 26 H 0.07 3.05 7.21 -2.39 -0.02 3.03 16 27 H 0.02 1.06 6.60 -2.38 -0.02 1.05 16 28 H 0.07 2.18 8.13 -2.39 -0.02 2.16 16 29 H 0.09 3.41 5.11 -2.39 -0.01 3.40 16 30 H -0.01 -0.49 5.88 -2.39 -0.01 -0.50 16 31 H 0.01 0.44 7.23 -2.39 -0.02 0.42 16 32 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 33 H 0.22 3.15 8.06 -2.91 -0.02 3.12 16 34 H 0.21 3.38 8.06 -2.91 -0.02 3.36 16 35 H 0.23 4.83 8.06 -2.91 -0.02 4.80 16 36 H 0.15 5.93 8.06 -2.91 -0.02 5.90 16 Total: -1.00 -67.57 293.94 4.47 -63.10 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: 1.09 Total: 16.31 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: 6.45 Total: -7.91 kcal Atomic # 7 Polarization: -111.65 SS G_CDS: -5.09 Total: -116.74 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -67.57 4.47 -63.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128959751.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.614 kcal (2) G-P(sol) polarization free energy of solvation -67.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds