Wall clock time and date at job start Mon Mar 30 2020 04:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46502 * 120.00363 * 2 1 4 4 C 1.50702 * 109.46961 * 269.99900 * 3 2 1 5 5 H 1.07993 * 119.99818 * 359.97438 * 4 3 2 6 6 C 1.37874 * 119.99655 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99837 * 180.02562 * 6 4 3 8 8 Si 1.86800 * 120.00431 * 359.97438 * 6 4 3 9 9 H 1.48504 * 109.46671 * 90.00173 * 8 6 4 10 10 H 1.48497 * 109.47498 * 210.00268 * 8 6 4 11 11 H 1.48496 * 109.47160 * 330.00567 * 8 6 4 12 12 C 1.34781 * 120.00262 * 179.97438 * 2 1 3 13 13 O 1.21549 * 120.00120 * 184.84885 * 12 2 1 14 14 C 1.47850 * 119.99551 * 4.85207 * 12 2 1 15 15 C 1.39597 * 120.15114 * 320.82628 * 14 12 2 16 16 C 1.37917 * 119.85149 * 179.97438 * 15 14 12 17 17 C 1.38355 * 120.22578 * 0.02562 * 16 15 14 18 18 C 1.38602 * 120.19795 * 359.97438 * 17 16 15 19 19 C 1.37923 * 120.11325 * 0.02562 * 18 17 16 20 20 C 1.51205 * 108.23631 * 180.02562 * 18 17 16 21 21 N 1.48037 * 105.67847 * 17.51732 * 20 18 17 22 22 C 1.48215 * 103.81829 * 332.12060 * 21 20 18 23 23 H 1.09000 * 109.47487 * 265.61166 * 1 2 3 24 24 H 1.08993 * 109.47002 * 25.61457 * 1 2 3 25 25 H 1.09003 * 109.46835 * 145.61292 * 1 2 3 26 26 H 1.09002 * 109.46538 * 29.99765 * 3 2 1 27 27 H 1.08993 * 109.47635 * 149.99429 * 3 2 1 28 28 H 0.96998 * 120.00062 * 179.97438 * 7 6 4 29 29 H 1.07995 * 120.07419 * 359.96803 * 15 14 12 30 30 H 1.07999 * 119.88980 * 179.97438 * 16 15 14 31 31 H 1.07989 * 120.04480 * 179.97438 * 19 18 17 32 32 H 1.09007 * 110.20891 * 136.57304 * 20 18 17 33 33 H 1.08997 * 110.20486 * 258.38300 * 20 18 17 34 34 H 1.00896 * 110.99918 * 212.96491 * 21 20 18 35 35 H 1.08995 * 110.32716 * 268.95659 * 22 21 20 36 36 H 1.08999 * 110.16950 * 147.00542 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0982 1.0957 -2.2416 6 6 3.1261 2.8778 -1.6727 7 7 3.3449 3.2577 -2.9127 8 14 3.7319 3.9298 -0.2530 9 1 5.1053 3.5090 0.1240 10 1 3.7468 5.3564 -0.6650 11 1 2.8253 3.7602 0.9108 12 6 2.1389 -1.1672 0.0005 13 8 3.3512 -1.1690 0.0895 14 6 1.4036 -2.4454 -0.1072 15 6 0.1901 -2.6147 0.5617 16 6 -0.4909 -3.8094 0.4565 17 6 0.0249 -4.8400 -0.3090 18 6 1.2292 -4.6781 -0.9756 19 6 1.9195 -3.4880 -0.8781 20 6 1.5333 -5.9579 -1.7211 21 7 0.2504 -6.6930 -1.7938 22 6 -0.4895 -6.2332 -0.5946 23 1 -0.3634 -0.0786 1.0246 24 1 -0.3633 0.9266 -0.4442 25 1 -0.3633 -0.8481 -0.5804 26 1 1.6084 2.0283 0.5138 27 1 3.1499 1.1384 0.5139 28 1 3.8212 4.0839 -3.0899 29 1 -0.2145 -1.8120 1.1603 30 1 -1.4296 -3.9412 0.9740 31 1 2.8580 -3.3632 -1.3975 32 1 1.8955 -5.7325 -2.7242 33 1 2.2740 -6.5438 -1.1768 34 1 0.4025 -7.6899 -1.7617 35 1 -0.2861 -6.8903 0.2508 36 1 -1.5594 -6.2045 -0.8012 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130999804.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:15 Heat of formation + Delta-G solvation = 17.670305 kcal Electronic energy + Delta-G solvation = -18924.144185 eV Core-core repulsion = 15987.859845 eV Total energy + Delta-G solvation = -2936.284340 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.51877 -38.93707 -36.11343 -35.04277 -32.57880 -31.54295 -30.51937 -28.31212 -27.78104 -26.05017 -24.26145 -22.55546 -21.45669 -21.30795 -18.83524 -17.05613 -16.92583 -16.36541 -15.93577 -15.62078 -15.22419 -14.61239 -14.21663 -13.91267 -13.79340 -13.60492 -13.08060 -12.80468 -12.58494 -12.41632 -12.27960 -12.16894 -11.97786 -11.60279 -11.31909 -10.96249 -10.82902 -10.53058 -10.17670 -9.58088 -9.35293 -9.15073 -8.86016 -8.59975 -8.34955 -7.75072 -6.09562 -4.09038 1.00542 1.33644 3.19305 3.28912 3.34827 3.36714 3.62517 3.97300 4.00021 4.28554 4.38771 4.40062 4.84498 4.95584 5.10020 5.15402 5.22750 5.25280 5.33302 5.45050 5.62092 5.64636 5.75570 5.84535 5.98361 6.12630 6.15900 6.22639 6.42177 6.52805 6.67838 6.84491 6.91473 6.93446 7.28407 7.58603 8.16508 8.45011 8.85760 8.94856 9.50064 11.03741 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.038113 B = 0.004562 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.487944 B = 6135.580793 C = 6403.984803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.589 5.589 3 C 0.214 3.786 4 C -0.532 4.532 5 H 0.075 0.925 6 C 0.073 3.927 7 N -0.896 5.896 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.266 1.266 12 C 0.551 3.449 13 O -0.536 6.536 14 C -0.110 4.110 15 C -0.094 4.094 16 C -0.108 4.108 17 C -0.095 4.095 18 C -0.113 4.113 19 C -0.047 4.047 20 C 0.081 3.919 21 N -0.659 5.659 22 C 0.079 3.921 23 H 0.048 0.952 24 H 0.077 0.923 25 H 0.067 0.933 26 H 0.032 0.968 27 H 0.039 0.961 28 H 0.265 0.735 29 H 0.140 0.860 30 H 0.126 0.874 31 H 0.132 0.868 32 H 0.093 0.907 33 H 0.059 0.941 34 H 0.345 0.655 35 H 0.059 0.941 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.769 -17.309 7.174 21.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.320 5.320 3 C 0.094 3.906 4 C -0.570 4.570 5 H 0.093 0.907 6 C -0.129 4.129 7 N -0.535 5.535 8 Si 0.704 3.296 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.190 1.190 12 C 0.337 3.663 13 O -0.414 6.414 14 C -0.113 4.113 15 C -0.112 4.112 16 C -0.127 4.127 17 C -0.096 4.096 18 C -0.114 4.114 19 C -0.066 4.066 20 C -0.048 4.048 21 N -0.287 5.287 22 C -0.050 4.050 23 H 0.066 0.934 24 H 0.096 0.904 25 H 0.086 0.914 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.158 0.842 30 H 0.144 0.856 31 H 0.150 0.850 32 H 0.111 0.889 33 H 0.077 0.923 34 H 0.160 0.840 35 H 0.077 0.923 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.391 -16.713 6.576 20.267 hybrid contribution 0.764 0.274 1.262 1.501 sum -8.627 -16.439 7.838 20.152 Atomic orbital electron populations 1.22006 0.80980 1.03664 1.00012 1.47740 1.06374 1.06887 1.70974 1.19731 0.92620 0.79704 0.98538 1.21331 1.37198 1.07307 0.91193 0.90693 1.24854 0.95166 0.97303 0.95621 1.69899 1.41372 1.23534 1.18669 0.86841 0.80166 0.79754 0.82881 1.19845 1.21015 1.19036 1.18141 0.87089 0.83319 0.77713 1.90749 1.13524 1.87073 1.50021 1.20061 0.95893 0.95205 1.00132 1.21611 0.93458 0.97533 0.98602 1.20357 1.00368 0.92141 0.99799 1.20673 0.95840 0.95609 0.97462 1.20392 0.96023 0.95312 0.99668 1.20492 0.99239 0.90213 0.96652 1.21391 0.91560 0.91297 1.00550 1.63610 1.15656 1.10348 1.39060 1.21455 0.99890 0.91814 0.91795 0.93368 0.90386 0.91432 0.94966 0.94268 0.92511 0.84228 0.85583 0.84963 0.88880 0.92288 0.83998 0.92344 0.89088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.22 8.88 59.85 0.53 1.75 16 2 N -0.59 -12.52 2.86 -184.08 -0.53 -13.04 16 3 C 0.21 5.32 4.25 -5.19 -0.02 5.29 16 4 C -0.53 -15.45 9.94 -34.44 -0.34 -15.80 16 5 H 0.07 2.39 8.06 -52.49 -0.42 1.97 16 6 C 0.07 2.14 5.47 -17.82 -0.10 2.05 16 7 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 8 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 9 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 12 C 0.55 11.90 7.35 -12.33 -0.09 11.81 16 13 O -0.54 -13.70 16.47 5.32 0.09 -13.61 16 14 C -0.11 -1.88 5.24 -104.97 -0.55 -2.43 16 15 C -0.09 -1.26 7.56 -39.19 -0.30 -1.56 16 16 C -0.11 -1.24 10.03 -39.66 -0.40 -1.64 16 17 C -0.10 -1.14 6.27 -104.18 -0.65 -1.79 16 18 C -0.11 -1.52 6.25 -104.36 -0.65 -2.17 16 19 C -0.05 -0.75 9.63 -39.21 -0.38 -1.13 16 20 C 0.08 0.85 7.45 -4.10 -0.03 0.82 16 21 N -0.66 -6.22 7.73 -113.88 -0.88 -7.10 16 22 C 0.08 0.72 7.46 -3.99 -0.03 0.69 16 23 H 0.05 0.60 6.90 -51.93 -0.36 0.25 16 24 H 0.08 1.26 8.04 -51.93 -0.42 0.84 16 25 H 0.07 0.98 5.81 -51.93 -0.30 0.68 16 26 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 27 H 0.04 1.03 6.79 -51.93 -0.35 0.68 16 28 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 29 H 0.14 1.63 5.30 -52.49 -0.28 1.35 16 30 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 31 H 0.13 2.19 8.05 -52.49 -0.42 1.77 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.34 2.29 8.91 -39.29 -0.35 1.94 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 298.91 15.07 4.50 4.50 Total: -1.00 -34.94 298.91 -8.27 -43.21 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -4.55 Total: 0.20 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -3.01 Total: -4.10 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: -0.63 Total: -47.16 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: 0.09 Total: -13.61 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -34.94 -8.27 -43.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130999804.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.881 kcal (2) G-P(sol) polarization free energy of solvation -34.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds