Wall clock time and date at job start Mon Mar 30 2020 04:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46502 * 120.00363 * 2 1 4 4 C 1.50702 * 109.46961 * 269.99900 * 3 2 1 5 5 H 1.07993 * 119.99818 * 359.97438 * 4 3 2 6 6 C 1.37874 * 119.99655 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99837 * 180.02562 * 6 4 3 8 8 Si 1.86800 * 120.00431 * 359.97438 * 6 4 3 9 9 H 1.48504 * 109.46671 * 90.00173 * 8 6 4 10 10 H 1.48497 * 109.47498 * 210.00268 * 8 6 4 11 11 H 1.48496 * 109.47160 * 330.00567 * 8 6 4 12 12 C 1.34781 * 120.00262 * 179.97438 * 2 1 3 13 13 O 1.21549 * 120.00120 * 184.84885 * 12 2 1 14 14 C 1.47850 * 119.99551 * 4.85207 * 12 2 1 15 15 C 1.39597 * 120.15114 * 320.82628 * 14 12 2 16 16 C 1.37917 * 119.85149 * 179.97438 * 15 14 12 17 17 C 1.38355 * 120.22578 * 0.02562 * 16 15 14 18 18 C 1.38602 * 120.19795 * 359.97438 * 17 16 15 19 19 C 1.37923 * 120.11325 * 0.02562 * 18 17 16 20 20 C 1.51205 * 108.23631 * 180.02562 * 18 17 16 21 21 N 1.48037 * 105.67847 * 17.51732 * 20 18 17 22 22 C 1.48215 * 103.81829 * 332.12060 * 21 20 18 23 23 H 1.09000 * 109.47487 * 265.61166 * 1 2 3 24 24 H 1.08993 * 109.47002 * 25.61457 * 1 2 3 25 25 H 1.09003 * 109.46835 * 145.61292 * 1 2 3 26 26 H 1.09002 * 109.46538 * 29.99765 * 3 2 1 27 27 H 1.08993 * 109.47635 * 149.99429 * 3 2 1 28 28 H 0.96998 * 120.00062 * 179.97438 * 7 6 4 29 29 H 1.07995 * 120.07419 * 359.96803 * 15 14 12 30 30 H 1.07999 * 119.88980 * 179.97438 * 16 15 14 31 31 H 1.07989 * 120.04480 * 179.97438 * 19 18 17 32 32 H 1.09007 * 110.20891 * 136.57304 * 20 18 17 33 33 H 1.08997 * 110.20486 * 258.38300 * 20 18 17 34 34 H 1.00896 * 110.99918 * 212.96491 * 21 20 18 35 35 H 1.08995 * 110.32716 * 268.95659 * 22 21 20 36 36 H 1.08999 * 110.16950 * 147.00542 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0982 1.0957 -2.2416 6 6 3.1261 2.8778 -1.6727 7 7 3.3449 3.2577 -2.9127 8 14 3.7319 3.9298 -0.2530 9 1 5.1053 3.5090 0.1240 10 1 3.7468 5.3564 -0.6650 11 1 2.8253 3.7602 0.9108 12 6 2.1389 -1.1672 0.0005 13 8 3.3512 -1.1690 0.0895 14 6 1.4036 -2.4454 -0.1072 15 6 0.1901 -2.6147 0.5617 16 6 -0.4909 -3.8094 0.4565 17 6 0.0249 -4.8400 -0.3090 18 6 1.2292 -4.6781 -0.9756 19 6 1.9195 -3.4880 -0.8781 20 6 1.5333 -5.9579 -1.7211 21 7 0.2504 -6.6930 -1.7938 22 6 -0.4895 -6.2332 -0.5946 23 1 -0.3634 -0.0786 1.0246 24 1 -0.3633 0.9266 -0.4442 25 1 -0.3633 -0.8481 -0.5804 26 1 1.6084 2.0283 0.5138 27 1 3.1499 1.1384 0.5139 28 1 3.8212 4.0839 -3.0899 29 1 -0.2145 -1.8120 1.1603 30 1 -1.4296 -3.9412 0.9740 31 1 2.8580 -3.3632 -1.3975 32 1 1.8955 -5.7325 -2.7242 33 1 2.2740 -6.5438 -1.1768 34 1 0.4025 -7.6899 -1.7617 35 1 -0.2861 -6.8903 0.2508 36 1 -1.5594 -6.2045 -0.8012 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130999804.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:15 Heat of formation + Delta-G solvation = -8.914519 kcal Electronic energy + Delta-G solvation = -18925.296990 eV Core-core repulsion = 15987.859845 eV Total energy + Delta-G solvation = -2937.437145 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.65872 -40.34477 -37.17064 -36.77612 -34.73174 -32.56345 -31.80746 -30.03921 -28.71302 -27.48807 -25.66512 -24.02865 -22.67627 -22.30933 -20.35117 -19.17813 -18.16115 -17.55234 -17.42418 -16.74366 -16.45039 -16.07889 -15.92144 -15.33099 -14.78047 -14.64914 -14.51166 -14.21546 -13.88896 -13.83971 -13.67155 -13.43607 -13.20990 -12.99617 -12.81596 -12.51117 -12.38496 -12.07486 -11.86747 -11.77599 -10.90498 -10.85541 -10.19109 -9.93970 -9.49211 -9.22453 -8.36904 -6.43517 -0.12148 0.29650 1.31810 1.36537 1.45081 1.71184 2.19747 2.29430 2.71267 2.97204 3.25444 3.34347 3.51302 3.61873 3.93310 4.20815 4.33092 4.36667 4.42326 4.47101 4.54553 4.58875 4.74743 4.80780 4.85278 4.89029 4.91904 4.99506 5.22137 5.28912 5.34301 5.40955 5.52669 5.62394 5.84311 6.19167 6.35234 6.54488 6.57910 7.13527 7.27257 8.80267 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.038113 B = 0.004562 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.487944 B = 6135.580793 C = 6403.984803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.597 5.597 3 C 0.222 3.778 4 C -0.543 4.543 5 H 0.025 0.975 6 C 0.012 3.988 7 N -0.945 5.945 8 Si 0.951 3.049 9 H -0.276 1.276 10 H -0.272 1.272 11 H -0.235 1.235 12 C 0.542 3.458 13 O -0.594 6.594 14 C -0.138 4.138 15 C -0.086 4.086 16 C -0.097 4.097 17 C -0.090 4.090 18 C -0.125 4.125 19 C -0.071 4.071 20 C 0.082 3.918 21 N -0.666 5.666 22 C 0.081 3.919 23 H 0.093 0.907 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.059 0.941 27 H 0.021 0.979 28 H 0.270 0.730 29 H 0.161 0.839 30 H 0.171 0.829 31 H 0.106 0.894 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.362 0.638 35 H 0.085 0.915 36 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.540 -18.687 9.670 24.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.326 5.326 3 C 0.100 3.900 4 C -0.581 4.581 5 H 0.043 0.957 6 C -0.186 4.186 7 N -0.585 5.585 8 Si 0.773 3.227 9 H -0.202 1.202 10 H -0.197 1.197 11 H -0.158 1.158 12 C 0.331 3.669 13 O -0.476 6.476 14 C -0.142 4.142 15 C -0.104 4.104 16 C -0.115 4.115 17 C -0.090 4.090 18 C -0.126 4.126 19 C -0.091 4.091 20 C -0.047 4.047 21 N -0.296 5.296 22 C -0.047 4.047 23 H 0.112 0.888 24 H 0.091 0.909 25 H 0.099 0.901 26 H 0.077 0.923 27 H 0.039 0.961 28 H 0.079 0.921 29 H 0.179 0.821 30 H 0.188 0.812 31 H 0.124 0.876 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.179 0.821 35 H 0.103 0.897 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.229 -18.122 9.075 23.671 hybrid contribution 1.561 0.557 0.379 1.700 sum -10.668 -17.565 9.455 22.622 Atomic orbital electron populations 1.22339 0.77591 1.04057 1.03069 1.47842 1.08585 1.05665 1.70556 1.19436 0.92987 0.82043 0.95528 1.21546 1.37339 1.06998 0.92256 0.95683 1.25889 0.95051 0.98858 0.98844 1.70054 1.42504 1.24488 1.21423 0.85668 0.79596 0.77695 0.79709 1.20207 1.19741 1.15756 1.18941 0.86786 0.84903 0.76258 1.90688 1.16167 1.88108 1.52671 1.19770 0.97865 0.93227 1.03298 1.21814 0.91730 0.99172 0.97696 1.20795 1.01270 0.90644 0.98798 1.21233 0.94730 0.97193 0.95881 1.20646 0.96593 0.95116 1.00253 1.20413 0.99147 0.91791 0.97752 1.21389 0.92769 0.90476 1.00073 1.63591 1.14797 1.11572 1.39660 1.21594 1.00557 0.90083 0.92460 0.88848 0.90925 0.90091 0.92310 0.96059 0.92123 0.82143 0.81182 0.87618 0.89571 0.90691 0.82059 0.89739 0.87270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.12 8.88 127.77 1.13 3.26 16 2 N -0.60 -25.69 2.86 -854.58 -2.44 -28.14 16 3 C 0.22 11.15 4.25 85.63 0.36 11.51 16 4 C -0.54 -32.93 9.94 25.60 0.25 -32.67 16 5 H 0.02 1.71 8.06 -2.91 -0.02 1.68 16 6 C 0.01 0.71 5.47 84.65 0.46 1.17 16 7 N -0.94 -60.76 13.96 21.45 0.30 -60.46 16 8 Si 0.95 44.88 27.47 68.60 1.88 46.76 16 9 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.23 -9.82 6.54 99.48 0.65 -9.17 16 12 C 0.54 24.45 7.35 86.79 0.64 25.09 16 13 O -0.59 -32.51 16.47 -3.87 -0.06 -32.57 16 14 C -0.14 -4.82 5.24 -20.09 -0.11 -4.93 16 15 C -0.09 -2.10 7.56 22.52 0.17 -1.93 16 16 C -0.10 -1.82 10.03 22.22 0.22 -1.59 16 17 C -0.09 -1.85 6.27 -19.58 -0.12 -1.97 16 18 C -0.13 -3.27 6.25 -19.69 -0.12 -3.39 16 19 C -0.07 -2.42 9.63 22.51 0.22 -2.20 16 20 C 0.08 1.63 7.45 85.50 0.64 2.26 16 21 N -0.67 -10.55 7.73 -514.20 -3.97 -14.52 16 22 C 0.08 1.12 7.46 85.47 0.64 1.76 16 23 H 0.09 1.97 6.90 -2.39 -0.02 1.96 16 24 H 0.07 2.25 8.04 -2.39 -0.02 2.23 16 25 H 0.08 2.21 5.81 -2.39 -0.01 2.19 16 26 H 0.06 2.63 7.13 -2.39 -0.02 2.62 16 27 H 0.02 1.15 6.79 -2.39 -0.02 1.13 16 28 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 29 H 0.16 3.13 5.30 -2.91 -0.02 3.11 16 30 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 31 H 0.11 3.96 8.05 -2.92 -0.02 3.94 16 32 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 33 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.36 3.60 8.91 -89.70 -0.80 2.80 16 35 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -82.44 298.91 0.34 -82.10 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: 0.25 Total: 10.47 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: 4.39 Total: -3.64 kcal Atomic # 7 Polarization: -97.00 SS G_CDS: -6.12 Total: -103.12 kcal Atomic # 8 Polarization: -32.51 SS G_CDS: -0.06 Total: -32.57 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.88 Total: 46.76 kcal Total: -82.44 0.34 -82.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130999804.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.183 kcal (2) G-P(sol) polarization free energy of solvation -82.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds