Wall clock time and date at job start Mon Mar 30 2020 04:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31517 * 119.99524 * 179.97438 * 6 4 2 8 8 Si 1.86794 * 120.00267 * 359.97438 * 6 4 2 9 9 H 1.48506 * 109.46589 * 89.99875 * 8 6 4 10 10 H 1.48490 * 109.47303 * 209.99928 * 8 6 4 11 11 H 1.48497 * 109.46869 * 330.00523 * 8 6 4 12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 13 13 C 1.34777 * 120.00033 * 84.99600 * 12 2 1 14 14 O 1.21551 * 119.99902 * 0.02562 * 13 12 2 15 15 C 1.47846 * 120.00253 * 180.02562 * 13 12 2 16 16 C 1.39596 * 120.14580 * 359.72642 * 15 13 12 17 17 C 1.37927 * 119.84713 * 179.75154 * 16 15 13 18 18 C 1.38346 * 120.22404 * 0.53598 * 17 16 15 19 19 C 1.38605 * 120.20165 * 359.72057 * 18 17 16 20 20 C 1.37922 * 120.10718 * 0.02562 * 19 18 17 21 21 C 1.51204 * 108.23614 * 180.02562 * 19 18 17 22 22 N 1.48031 * 105.67756 * 342.47157 * 21 19 18 23 23 C 1.48034 * 103.90881 * 27.66889 * 22 21 19 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 0.97001 * 119.99599 * 179.97438 * 7 6 4 28 28 H 0.96992 * 120.00062 * 265.00053 * 12 2 1 29 29 H 1.07998 * 120.07937 * 0.02562 * 16 15 13 30 30 H 1.07997 * 119.88658 * 180.24847 * 17 16 15 31 31 H 1.08000 * 120.03726 * 179.97438 * 20 19 18 32 32 H 1.09000 * 110.20854 * 101.52347 * 21 19 18 33 33 H 1.08999 * 110.20811 * 223.41332 * 21 19 18 34 34 H 1.00899 * 111.00229 * 147.05099 * 22 21 19 35 35 H 1.08995 * 110.20836 * 213.26488 * 23 22 21 36 36 H 1.09003 * 110.27343 * 91.40702 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1374 -0.8597 3.5564 8 14 0.6259 1.2797 2.6542 9 1 -0.8020 0.8742 2.6994 10 1 0.9772 1.9952 3.9071 11 1 0.8490 2.1772 1.4923 12 7 2.0184 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8583 1.1613 -2.4116 15 6 2.6393 -0.7151 -3.5646 16 6 2.9772 -2.0682 -3.5041 17 6 3.4310 -2.7136 -4.6355 18 6 3.5627 -2.0218 -5.8263 19 6 3.2339 -0.6769 -5.8914 20 6 2.7742 -0.0219 -4.7681 21 6 3.4776 -0.1981 -7.3048 22 7 4.3568 -1.2145 -7.9255 23 6 4.0306 -2.4606 -7.1959 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.9033 -0.5281 4.4375 28 1 2.2491 -1.6316 -1.1527 29 1 2.8794 -2.6096 -2.5748 30 1 3.6888 -3.7614 -4.5904 31 1 2.5187 1.0261 -4.8200 32 1 2.5349 -0.1334 -7.8482 33 1 3.9736 0.7724 -7.2933 34 1 4.1600 -1.3100 -8.9105 35 1 4.9172 -3.0884 -7.1077 36 1 3.2360 -3.0020 -7.7095 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131143362.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:24 Heat of formation + Delta-G solvation = 4.565963 kcal Electronic energy + Delta-G solvation = -18695.095710 eV Core-core repulsion = 15758.243123 eV Total energy + Delta-G solvation = -2936.852587 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.51713 -38.94198 -36.20857 -35.04955 -32.47310 -31.58243 -30.84491 -29.29613 -27.75931 -25.23023 -24.24615 -22.49214 -21.49410 -20.86242 -19.50028 -17.77706 -16.84955 -16.19975 -15.87367 -15.52934 -15.18422 -14.86093 -14.27300 -13.85930 -13.78892 -13.57267 -13.31016 -12.97903 -12.69945 -12.42005 -12.26530 -12.20832 -11.80603 -11.72588 -11.28343 -10.94246 -10.82465 -10.19696 -9.74299 -9.41973 -9.27879 -9.24856 -8.94110 -8.77163 -8.48004 -8.16228 -6.21975 -4.24789 0.86030 1.27413 3.10546 3.23115 3.35276 3.39939 3.77588 3.93550 4.00094 4.22615 4.31025 4.34128 4.83919 5.04196 5.08906 5.10835 5.12973 5.21942 5.32872 5.38590 5.59653 5.75400 5.90641 6.06711 6.21531 6.29878 6.33146 6.39089 6.46492 6.54326 6.77502 6.84516 6.86070 7.17705 7.25293 7.49335 8.12370 8.48792 8.73635 8.87284 9.38540 10.90146 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.046323 B = 0.004193 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.301763 B = 6676.447756 C = 7070.032065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.236 3.764 3 H 0.050 0.950 4 C -0.536 4.536 5 H 0.080 0.920 6 C 0.079 3.921 7 N -0.892 5.892 8 Si 0.886 3.114 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.261 1.261 12 N -0.694 5.694 13 C 0.546 3.454 14 O -0.552 6.552 15 C -0.118 4.118 16 C -0.082 4.082 17 C -0.107 4.107 18 C -0.091 4.091 19 C -0.117 4.117 20 C -0.044 4.044 21 C 0.082 3.918 22 N -0.660 5.660 23 C 0.079 3.921 24 H 0.048 0.952 25 H 0.053 0.947 26 H 0.036 0.964 27 H 0.268 0.732 28 H 0.395 0.605 29 H 0.135 0.865 30 H 0.128 0.872 31 H 0.136 0.864 32 H 0.059 0.941 33 H 0.092 0.908 34 H 0.345 0.655 35 H 0.092 0.908 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.343 -4.087 -20.652 21.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.133 3.867 3 H 0.068 0.932 4 C -0.574 4.574 5 H 0.098 0.902 6 C -0.125 4.125 7 N -0.529 5.529 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.186 1.186 12 N -0.342 5.342 13 C 0.331 3.669 14 O -0.432 6.432 15 C -0.121 4.121 16 C -0.101 4.101 17 C -0.125 4.125 18 C -0.092 4.092 19 C -0.118 4.118 20 C -0.063 4.063 21 C -0.047 4.047 22 N -0.288 5.288 23 C -0.050 4.050 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.055 0.945 27 H 0.077 0.923 28 H 0.229 0.771 29 H 0.153 0.847 30 H 0.146 0.854 31 H 0.154 0.846 32 H 0.077 0.923 33 H 0.111 0.889 34 H 0.161 0.839 35 H 0.110 0.890 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.784 -3.079 -20.102 20.415 hybrid contribution -1.399 -0.042 0.032 1.400 sum 0.385 -3.120 -20.071 20.315 Atomic orbital electron populations 1.22453 0.99172 1.00928 0.99396 1.19148 0.90227 0.94769 0.82597 0.93184 1.21027 1.33368 1.14497 0.88513 0.90165 1.24826 0.95475 0.96715 0.95486 1.69870 1.44856 1.40083 0.98052 0.86869 0.80506 0.83600 0.77498 1.20270 1.22105 1.18617 1.46144 1.64533 1.13847 1.09627 1.18199 0.78654 0.86697 0.83318 1.90720 1.51650 1.15617 1.85190 1.20115 1.03028 0.94334 0.94655 1.21355 0.96554 0.93601 0.98599 1.20384 1.00952 1.00080 0.91082 1.20707 0.98659 0.94720 0.95072 1.20425 1.01171 0.94891 0.95285 1.20527 0.95594 1.00370 0.89830 1.21382 0.95620 0.97231 0.90466 1.63482 1.53094 1.04867 1.07376 1.21429 1.00161 0.93018 0.90378 0.93345 0.92764 0.94483 0.92255 0.77064 0.84729 0.85386 0.84642 0.92305 0.88940 0.83893 0.88982 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.64 8.96 37.16 0.33 -3.31 16 2 C 0.24 5.70 2.15 -69.08 -0.15 5.55 16 3 H 0.05 1.33 6.63 -51.93 -0.34 0.99 16 4 C -0.54 -14.54 9.31 -34.44 -0.32 -14.86 16 5 H 0.08 2.27 7.98 -52.49 -0.42 1.85 16 6 C 0.08 2.21 5.45 -17.82 -0.10 2.11 16 7 N -0.89 -26.39 13.96 55.43 0.77 -25.62 16 8 Si 0.89 21.81 24.37 -169.99 -4.14 17.66 16 9 H -0.28 -6.56 6.87 56.52 0.39 -6.17 16 10 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 11 H -0.26 -6.41 6.53 56.52 0.37 -6.04 16 12 N -0.69 -14.14 5.02 -55.88 -0.28 -14.42 16 13 C 0.55 10.87 7.74 -12.33 -0.10 10.78 16 14 O -0.55 -12.81 16.01 5.32 0.09 -12.72 16 15 C -0.12 -1.89 5.87 -104.97 -0.62 -2.50 16 16 C -0.08 -1.09 9.54 -39.19 -0.37 -1.46 16 17 C -0.11 -1.21 10.03 -39.66 -0.40 -1.60 16 18 C -0.09 -1.04 6.27 -104.19 -0.65 -1.69 16 19 C -0.12 -1.45 6.25 -104.36 -0.65 -2.11 16 20 C -0.04 -0.64 9.59 -39.21 -0.38 -1.02 16 21 C 0.08 0.78 7.45 -4.11 -0.03 0.75 16 22 N -0.66 -5.76 7.71 -114.03 -0.88 -6.64 16 23 C 0.08 0.68 7.45 -4.09 -0.03 0.65 16 24 H 0.05 1.12 3.27 -51.93 -0.17 0.95 16 25 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 28 H 0.39 7.01 6.57 -40.82 -0.27 6.74 16 29 H 0.13 1.59 6.41 -52.49 -0.34 1.25 16 30 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 31 H 0.14 1.99 7.65 -52.49 -0.40 1.59 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.35 2.07 8.92 -39.29 -0.35 1.72 16 35 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 296.30 15.07 4.47 4.47 Total: -1.00 -32.38 296.30 -7.87 -40.25 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -4.43 Total: 5.73 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: -3.46 Total: -8.71 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: -0.39 Total: -46.68 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.09 Total: -12.72 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.14 Total: 17.66 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.38 -7.87 -40.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131143362.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.817 kcal (2) G-P(sol) polarization free energy of solvation -32.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds