Wall clock time and date at job start Mon Mar 30 2020 04:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31517 * 119.99524 * 179.97438 * 6 4 2 8 8 Si 1.86794 * 120.00267 * 359.97438 * 6 4 2 9 9 H 1.48506 * 109.46589 * 89.99875 * 8 6 4 10 10 H 1.48490 * 109.47303 * 209.99928 * 8 6 4 11 11 H 1.48497 * 109.46869 * 330.00523 * 8 6 4 12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 13 13 C 1.34777 * 120.00033 * 84.99600 * 12 2 1 14 14 O 1.21551 * 119.99902 * 0.02562 * 13 12 2 15 15 C 1.47846 * 120.00253 * 180.02562 * 13 12 2 16 16 C 1.39596 * 120.14580 * 359.72642 * 15 13 12 17 17 C 1.37927 * 119.84713 * 179.75154 * 16 15 13 18 18 C 1.38346 * 120.22404 * 0.53598 * 17 16 15 19 19 C 1.38605 * 120.20165 * 359.72057 * 18 17 16 20 20 C 1.37922 * 120.10718 * 0.02562 * 19 18 17 21 21 C 1.51204 * 108.23614 * 180.02562 * 19 18 17 22 22 N 1.48031 * 105.67756 * 342.47157 * 21 19 18 23 23 C 1.48034 * 103.90881 * 27.66889 * 22 21 19 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 0.97001 * 119.99599 * 179.97438 * 7 6 4 28 28 H 0.96992 * 120.00062 * 265.00053 * 12 2 1 29 29 H 1.07998 * 120.07937 * 0.02562 * 16 15 13 30 30 H 1.07997 * 119.88658 * 180.24847 * 17 16 15 31 31 H 1.08000 * 120.03726 * 179.97438 * 20 19 18 32 32 H 1.09000 * 110.20854 * 101.52347 * 21 19 18 33 33 H 1.08999 * 110.20811 * 223.41332 * 21 19 18 34 34 H 1.00899 * 111.00229 * 147.05099 * 22 21 19 35 35 H 1.08995 * 110.20836 * 213.26488 * 23 22 21 36 36 H 1.09003 * 110.27343 * 91.40702 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1374 -0.8597 3.5564 8 14 0.6259 1.2797 2.6542 9 1 -0.8020 0.8742 2.6994 10 1 0.9772 1.9952 3.9071 11 1 0.8490 2.1772 1.4923 12 7 2.0184 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8583 1.1613 -2.4116 15 6 2.6393 -0.7151 -3.5646 16 6 2.9772 -2.0682 -3.5041 17 6 3.4310 -2.7136 -4.6355 18 6 3.5627 -2.0218 -5.8263 19 6 3.2339 -0.6769 -5.8914 20 6 2.7742 -0.0219 -4.7681 21 6 3.4776 -0.1981 -7.3048 22 7 4.3568 -1.2145 -7.9255 23 6 4.0306 -2.4606 -7.1959 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.9033 -0.5281 4.4375 28 1 2.2491 -1.6316 -1.1527 29 1 2.8794 -2.6096 -2.5748 30 1 3.6888 -3.7614 -4.5904 31 1 2.5187 1.0261 -4.8200 32 1 2.5349 -0.1334 -7.8482 33 1 3.9736 0.7724 -7.2933 34 1 4.1600 -1.3100 -8.9105 35 1 4.9172 -3.0884 -7.1077 36 1 3.2360 -3.0020 -7.7095 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131143362.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:23 Heat of formation + Delta-G solvation = -20.154451 kcal Electronic energy + Delta-G solvation = -18696.167668 eV Core-core repulsion = 15758.243123 eV Total energy + Delta-G solvation = -2937.924545 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.57561 -40.35466 -37.22988 -36.83792 -34.46729 -32.56630 -32.31765 -30.64471 -28.57991 -27.25909 -25.41960 -23.62638 -22.57170 -22.25977 -21.07508 -19.31460 -18.18378 -17.73275 -17.16108 -16.62706 -16.42356 -16.21122 -15.92743 -15.26730 -14.93702 -14.73380 -14.62854 -14.30442 -14.13690 -13.87790 -13.58613 -13.35783 -13.16006 -13.09439 -12.80717 -12.61617 -12.16350 -11.89670 -11.64373 -11.31737 -10.96155 -10.87864 -10.29039 -10.01811 -9.87769 -9.24053 -8.39863 -6.46266 -0.23587 0.29048 1.26458 1.35006 1.44593 1.81773 2.24989 2.29827 2.77341 2.96439 3.27408 3.33946 3.50019 3.77998 3.96722 4.25005 4.34424 4.38586 4.44073 4.47474 4.52750 4.56018 4.66076 4.82558 4.85803 4.94204 4.98360 5.22802 5.24576 5.29992 5.33720 5.38743 5.56005 5.62105 5.81498 6.10864 6.35964 6.54101 6.77024 7.14985 7.32582 8.75254 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.046323 B = 0.004193 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.301763 B = 6676.447756 C = 7070.032065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.240 3.760 3 H 0.023 0.977 4 C -0.536 4.536 5 H 0.058 0.942 6 C 0.031 3.969 7 N -0.931 5.931 8 Si 0.938 3.062 9 H -0.257 1.257 10 H -0.291 1.291 11 H -0.264 1.264 12 N -0.693 5.693 13 C 0.545 3.455 14 O -0.592 6.592 15 C -0.145 4.145 16 C -0.083 4.083 17 C -0.102 4.102 18 C -0.086 4.086 19 C -0.126 4.126 20 C -0.057 4.057 21 C 0.083 3.917 22 N -0.667 5.667 23 C 0.080 3.920 24 H 0.044 0.956 25 H 0.067 0.933 26 H 0.044 0.956 27 H 0.271 0.729 28 H 0.407 0.593 29 H 0.145 0.855 30 H 0.163 0.837 31 H 0.123 0.877 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.362 0.638 35 H 0.106 0.894 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.174 -5.274 -23.029 23.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.136 3.864 3 H 0.041 0.959 4 C -0.574 4.574 5 H 0.077 0.923 6 C -0.169 4.169 7 N -0.570 5.570 8 Si 0.765 3.235 9 H -0.183 1.183 10 H -0.218 1.218 11 H -0.189 1.189 12 N -0.341 5.341 13 C 0.334 3.666 14 O -0.475 6.475 15 C -0.148 4.148 16 C -0.101 4.101 17 C -0.120 4.120 18 C -0.087 4.087 19 C -0.127 4.127 20 C -0.077 4.077 21 C -0.045 4.045 22 N -0.298 5.298 23 C -0.048 4.048 24 H 0.062 0.938 25 H 0.086 0.914 26 H 0.063 0.937 27 H 0.081 0.919 28 H 0.244 0.756 29 H 0.163 0.837 30 H 0.180 0.820 31 H 0.141 0.859 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.180 0.820 35 H 0.124 0.876 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.617 -4.298 -22.512 22.976 hybrid contribution -1.242 0.247 0.647 1.422 sum 0.375 -4.052 -21.865 22.240 Atomic orbital electron populations 1.22346 0.97568 1.01872 0.99536 1.18830 0.91422 0.93224 0.82940 0.95901 1.21221 1.32607 1.13740 0.89811 0.92336 1.25535 0.96772 0.99307 0.95270 1.69969 1.46516 1.41840 0.98666 0.86014 0.79900 0.80329 0.77233 1.18285 1.21778 1.18906 1.45953 1.64855 1.14383 1.08952 1.18782 0.77496 0.86281 0.84034 1.90681 1.53457 1.17471 1.85922 1.19816 1.06099 0.95602 0.93274 1.21509 0.96190 0.92436 1.00002 1.20726 0.99565 1.01582 0.90168 1.21224 0.96755 0.94228 0.96473 1.20727 1.00422 0.95648 0.95899 1.20503 0.96623 1.00039 0.90486 1.21409 0.96715 0.97453 0.88958 1.63469 1.53054 1.04674 1.08587 1.21547 1.01469 0.93182 0.88591 0.93791 0.91409 0.93664 0.91946 0.75630 0.83750 0.81987 0.85904 0.90492 0.89012 0.81971 0.87614 0.89785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.89 8.96 71.98 0.65 -6.25 16 2 C 0.24 11.75 2.15 44.24 0.10 11.84 16 3 H 0.02 1.25 6.63 -2.39 -0.02 1.24 16 4 C -0.54 -29.52 9.31 25.60 0.24 -29.29 16 5 H 0.06 3.40 7.98 -2.91 -0.02 3.38 16 6 C 0.03 1.77 5.45 84.65 0.46 2.23 16 7 N -0.93 -55.83 13.96 21.45 0.30 -55.54 16 8 Si 0.94 44.98 24.37 68.60 1.67 46.65 16 9 H -0.26 -11.51 6.87 99.48 0.68 -10.83 16 10 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 11 H -0.26 -12.71 6.53 99.48 0.65 -12.06 16 12 N -0.69 -28.62 5.02 -448.98 -2.25 -30.87 16 13 C 0.55 22.24 7.74 86.79 0.67 22.91 16 14 O -0.59 -28.45 16.01 -3.88 -0.06 -28.51 16 15 C -0.14 -4.64 5.87 -20.09 -0.12 -4.76 16 16 C -0.08 -2.08 9.54 22.52 0.21 -1.86 16 17 C -0.10 -2.01 10.03 22.22 0.22 -1.79 16 18 C -0.09 -1.70 6.27 -19.58 -0.12 -1.82 16 19 C -0.13 -2.92 6.25 -19.69 -0.12 -3.05 16 20 C -0.06 -1.67 9.59 22.51 0.22 -1.46 16 21 C 0.08 1.39 7.45 85.50 0.64 2.03 16 22 N -0.67 -9.35 7.71 -514.67 -3.97 -13.32 16 23 C 0.08 1.05 7.45 85.51 0.64 1.69 16 24 H 0.04 1.98 3.27 -2.39 -0.01 1.97 16 25 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 26 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 27 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 28 H 0.41 14.54 6.57 -92.71 -0.61 13.93 16 29 H 0.14 3.22 6.41 -2.91 -0.02 3.20 16 30 H 0.16 2.07 8.06 -2.91 -0.02 2.04 16 31 H 0.12 3.79 7.65 -2.91 -0.02 3.77 16 32 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.36 2.99 8.92 -89.69 -0.80 2.19 16 35 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -70.77 296.30 -1.01 -71.78 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -0.37 Total: 19.37 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: 3.68 Total: -9.56 kcal Atomic # 7 Polarization: -93.80 SS G_CDS: -5.92 Total: -99.72 kcal Atomic # 8 Polarization: -28.45 SS G_CDS: -0.06 Total: -28.51 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.67 Total: 46.65 kcal Total: -70.77 -1.01 -71.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131143362.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.621 kcal (2) G-P(sol) polarization free energy of solvation -70.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds