Wall clock time and date at job start Mon Mar 30 2020 04:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 O 1.42898 * 109.47319 * 120.00307 * 2 1 3 5 5 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 6 6 C 1.38254 * 119.88131 * 264.72737 * 5 2 1 7 7 C 1.37978 * 120.22797 * 179.72118 * 6 5 2 8 8 C 1.39680 * 119.99968 * 0.54983 * 7 6 5 9 9 C 1.43194 * 120.11339 * 179.74567 * 8 7 6 10 10 N 6.84922 * 109.47234 * 239.89396 * 2 1 3 11 11 C 1.39508 * 119.76761 * 359.72476 * 8 7 6 12 12 C 1.38664 * 119.76778 * 0.02562 * 11 8 7 13 13 N 1.39703 * 119.99860 * 180.02562 * 12 11 8 14 14 C 1.46907 * 111.00143 * 63.92693 * 13 12 11 15 15 C 1.46900 * 110.99932 * 299.97953 * 13 12 11 16 16 C 1.50704 * 109.47143 * 190.00111 * 15 13 12 17 17 H 1.08007 * 119.99787 * 359.97438 * 16 15 13 18 18 C 1.37875 * 120.00115 * 179.97438 * 16 15 13 19 19 N 1.31513 * 120.00029 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99910 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47135 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47330 * 119.99762 * 20 18 16 23 23 H 1.48501 * 109.46954 * 239.99514 * 20 18 16 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 26 26 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 27 27 H 0.96708 * 113.99549 * 300.00230 * 4 2 1 28 28 H 1.07991 * 119.88787 * 359.97438 * 6 5 2 29 29 H 1.07997 * 119.99792 * 180.25021 * 7 6 5 30 30 H 1.07996 * 120.11286 * 180.02562 * 11 8 7 31 31 H 1.08998 * 109.46568 * 59.99962 * 14 13 12 32 32 H 1.08998 * 109.47016 * 179.97438 * 14 13 12 33 33 H 1.08998 * 109.46962 * 300.00314 * 14 13 12 34 34 H 1.09004 * 109.47007 * 309.99230 * 15 13 12 35 35 H 1.08999 * 109.47406 * 69.99712 * 15 13 12 36 36 H 0.96996 * 120.00237 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.0323 -0.7104 -1.2305 6 6 2.3657 -2.0505 -1.1643 7 6 2.8209 -2.7093 -2.2879 8 6 2.9571 -2.0196 -3.4948 9 6 3.4344 -2.6996 -4.6611 10 7 3.8132 -3.2391 -5.5863 11 6 2.6260 -0.6659 -3.5602 12 6 2.1645 -0.0145 -2.4263 13 7 1.8311 1.3408 -2.4864 14 6 0.6968 1.5642 -3.3929 15 6 2.9902 2.1510 -2.8841 16 6 2.6681 3.6119 -2.7020 17 1 1.6991 3.9088 -2.3287 18 6 3.6105 4.5694 -3.0121 19 7 4.7906 4.2078 -3.4662 20 14 3.2115 6.3802 -2.7857 21 1 1.8280 6.5209 -2.2648 22 1 4.1675 6.9810 -1.8211 23 1 3.3217 7.0784 -4.0917 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3635 0.5138 -0.8899 27 1 1.7209 -0.2701 1.9979 28 1 2.2657 -2.5844 -0.2310 29 1 3.0765 -3.7572 -2.2329 30 1 2.7287 -0.1273 -4.4905 31 1 -0.1690 1.0068 -3.0356 32 1 0.4579 2.6273 -3.4207 33 1 0.9598 1.2242 -4.3946 34 1 3.8472 1.8879 -2.2640 35 1 3.2261 1.9586 -3.9307 36 1 5.4537 4.8814 -3.6840 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131420374.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:37 Heat of formation + Delta-G solvation = 8.842467 kcal Electronic energy + Delta-G solvation = -19152.759119 eV Core-core repulsion = 16216.091976 eV Total energy + Delta-G solvation = -2936.667144 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.99543 -37.14855 -36.75602 -35.58261 -32.71563 -31.99685 -29.93612 -29.13649 -27.33122 -25.13165 -24.41808 -22.82320 -21.15836 -20.64618 -18.16983 -17.07230 -16.36165 -15.96139 -15.39308 -15.00220 -14.57496 -14.25004 -13.89173 -13.78362 -13.60335 -13.46635 -13.10850 -12.67280 -12.49456 -12.32047 -12.16685 -11.86244 -11.63707 -11.48645 -11.12333 -11.02865 -10.80774 -10.64277 -10.60098 -10.10322 -9.91931 -9.38273 -8.65989 -8.55223 -8.33383 -7.64834 -6.12355 -4.15212 0.92622 1.51141 2.77715 3.06550 3.25203 3.33318 3.36523 3.97049 4.04146 4.31537 4.36661 4.66361 4.97281 5.13646 5.22911 5.23783 5.38200 5.56177 5.64706 5.77036 5.89231 5.95718 6.02083 6.08811 6.21241 6.30364 6.41786 6.43496 6.57272 6.72202 6.89450 7.15041 7.20662 7.58860 7.69905 7.80415 7.86677 8.01925 8.41532 8.91427 9.49597 10.98288 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.016352 B = 0.006641 C = 0.005242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.967054 B = 4215.094898 C = 5340.030608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.145 3.855 3 H 0.091 0.909 4 O -0.572 6.572 5 C -0.037 4.037 6 C -0.096 4.096 7 C -0.089 4.089 8 C -0.029 4.029 9 C 0.264 3.736 10 N -0.433 5.433 11 C -0.101 4.101 12 C 0.119 3.881 13 N -0.509 5.509 14 C 0.039 3.961 15 C 0.196 3.804 16 C -0.512 4.512 17 H 0.066 0.934 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.899 3.101 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.285 1.285 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.074 0.926 27 H 0.378 0.622 28 H 0.138 0.862 29 H 0.128 0.872 30 H 0.131 0.869 31 H 0.049 0.951 32 H 0.083 0.917 33 H 0.019 0.981 34 H 0.034 0.966 35 H -0.002 1.002 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.328 -9.325 6.888 14.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.087 3.913 3 H 0.108 0.892 4 O -0.378 6.378 5 C -0.039 4.039 6 C -0.114 4.114 7 C -0.109 4.109 8 C -0.033 4.033 9 C -0.051 4.051 10 N -0.108 5.108 11 C -0.123 4.123 12 C 0.024 3.976 13 N -0.231 5.231 14 C -0.108 4.108 15 C 0.073 3.927 16 C -0.550 4.550 17 H 0.084 0.916 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.726 3.274 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.211 1.211 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.093 0.907 27 H 0.225 0.775 28 H 0.156 0.844 29 H 0.146 0.854 30 H 0.149 0.851 31 H 0.068 0.932 32 H 0.102 0.898 33 H 0.038 0.962 34 H 0.052 0.948 35 H 0.016 0.984 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.444 -10.277 5.392 13.788 hybrid contribution -0.110 1.410 -0.100 1.418 sum -7.554 -8.867 5.291 12.794 Atomic orbital electron populations 1.22383 0.95615 1.01951 1.02986 1.20462 0.92630 0.95911 0.82342 0.89163 1.86432 1.77409 1.57938 1.16026 1.19764 0.97379 0.93247 0.93485 1.20818 0.98645 0.93869 0.98091 1.21045 0.99167 0.99681 0.91032 1.15908 1.05651 0.93075 0.88685 1.25833 0.93177 0.93107 0.92980 1.81197 1.09762 1.09264 1.10588 1.21840 0.97794 0.92542 1.00171 1.18780 0.96233 0.91153 0.91414 1.59990 1.09998 1.01094 1.51986 1.22311 0.92301 1.03069 0.93088 1.19873 0.86297 0.91993 0.94583 1.21120 1.00444 0.89860 1.43608 0.91550 1.24987 0.94930 0.99375 0.95184 1.69962 1.05162 1.33849 1.44372 0.86434 0.78485 0.84705 0.77739 1.19604 1.20965 1.21098 0.92600 0.92393 0.90715 0.77509 0.84423 0.85424 0.85068 0.93190 0.89807 0.96204 0.94834 0.98385 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.97 9.52 37.16 0.35 -1.62 16 2 C 0.14 1.99 3.48 -27.88 -0.10 1.89 16 3 H 0.09 1.46 7.61 -51.93 -0.40 1.06 16 4 O -0.57 -6.98 12.13 -35.23 -0.43 -7.40 16 5 C -0.04 -0.56 5.09 -104.34 -0.53 -1.09 16 6 C -0.10 -1.26 9.33 -39.67 -0.37 -1.63 16 7 C -0.09 -1.12 9.75 -39.14 -0.38 -1.50 16 8 C -0.03 -0.42 5.73 -106.96 -0.61 -1.04 16 9 C 0.26 4.10 15.33 -22.47 -0.34 3.75 16 10 N -0.43 -7.40 18.54 41.84 0.78 -6.62 16 11 C -0.10 -1.65 8.36 -38.95 -0.33 -1.98 16 12 C 0.12 2.03 4.66 -83.84 -0.39 1.64 16 13 N -0.51 -9.73 3.74 -180.37 -0.68 -10.41 16 14 C 0.04 0.67 9.20 60.07 0.55 1.22 16 15 C 0.20 4.71 4.30 -4.97 -0.02 4.69 16 16 C -0.51 -13.32 8.46 -34.44 -0.29 -13.61 16 17 H 0.07 1.69 7.12 -52.48 -0.37 1.31 16 18 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 19 N -0.89 -25.63 13.29 55.43 0.74 -24.89 16 20 Si 0.90 20.65 29.54 -169.99 -5.02 15.62 16 21 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.93 7.43 -51.93 -0.39 0.55 16 27 H 0.38 2.99 9.08 45.56 0.41 3.40 16 28 H 0.14 1.61 7.33 -52.49 -0.38 1.22 16 29 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 30 H 0.13 2.25 7.13 -52.49 -0.37 1.87 16 31 H 0.05 0.72 7.43 -51.93 -0.39 0.33 16 32 H 0.08 1.52 6.76 -51.93 -0.35 1.17 16 33 H 0.02 0.33 7.34 -51.93 -0.38 -0.05 16 34 H 0.03 0.89 8.06 -51.93 -0.42 0.47 16 35 H 0.00 -0.04 7.47 -51.93 -0.39 -0.43 16 36 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 312.61 15.07 4.71 4.71 Total: -1.00 -29.57 312.61 -6.28 -35.85 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -3.83 Total: 0.96 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -2.56 Total: -7.83 kcal Atomic # 7 Polarization: -42.76 SS G_CDS: 0.84 Total: -41.92 kcal Atomic # 8 Polarization: -6.98 SS G_CDS: -0.43 Total: -7.40 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.57 -6.28 -35.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131420374.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.693 kcal (2) G-P(sol) polarization free energy of solvation -29.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds