Wall clock time and date at job start Mon Mar 30 2020 04:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 O 1.42898 * 109.47319 * 120.00307 * 2 1 3 5 5 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 6 6 C 1.38254 * 119.88131 * 264.72737 * 5 2 1 7 7 C 1.37978 * 120.22797 * 179.72118 * 6 5 2 8 8 C 1.39680 * 119.99968 * 0.54983 * 7 6 5 9 9 C 1.43194 * 120.11339 * 179.74567 * 8 7 6 10 10 N 6.84922 * 109.47234 * 239.89396 * 2 1 3 11 11 C 1.39508 * 119.76761 * 359.72476 * 8 7 6 12 12 C 1.38664 * 119.76778 * 0.02562 * 11 8 7 13 13 N 1.39703 * 119.99860 * 180.02562 * 12 11 8 14 14 C 1.46907 * 111.00143 * 63.92693 * 13 12 11 15 15 C 1.46900 * 110.99932 * 299.97953 * 13 12 11 16 16 C 1.50704 * 109.47143 * 190.00111 * 15 13 12 17 17 H 1.08007 * 119.99787 * 359.97438 * 16 15 13 18 18 C 1.37875 * 120.00115 * 179.97438 * 16 15 13 19 19 N 1.31513 * 120.00029 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99910 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47135 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47330 * 119.99762 * 20 18 16 23 23 H 1.48501 * 109.46954 * 239.99514 * 20 18 16 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 26 26 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 27 27 H 0.96708 * 113.99549 * 300.00230 * 4 2 1 28 28 H 1.07991 * 119.88787 * 359.97438 * 6 5 2 29 29 H 1.07997 * 119.99792 * 180.25021 * 7 6 5 30 30 H 1.07996 * 120.11286 * 180.02562 * 11 8 7 31 31 H 1.08998 * 109.46568 * 59.99962 * 14 13 12 32 32 H 1.08998 * 109.47016 * 179.97438 * 14 13 12 33 33 H 1.08998 * 109.46962 * 300.00314 * 14 13 12 34 34 H 1.09004 * 109.47007 * 309.99230 * 15 13 12 35 35 H 1.08999 * 109.47406 * 69.99712 * 15 13 12 36 36 H 0.96996 * 120.00237 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.0323 -0.7104 -1.2305 6 6 2.3657 -2.0505 -1.1643 7 6 2.8209 -2.7093 -2.2879 8 6 2.9571 -2.0196 -3.4948 9 6 3.4344 -2.6996 -4.6611 10 7 3.8132 -3.2391 -5.5863 11 6 2.6260 -0.6659 -3.5602 12 6 2.1645 -0.0145 -2.4263 13 7 1.8311 1.3408 -2.4864 14 6 0.6968 1.5642 -3.3929 15 6 2.9902 2.1510 -2.8841 16 6 2.6681 3.6119 -2.7020 17 1 1.6991 3.9088 -2.3287 18 6 3.6105 4.5694 -3.0121 19 7 4.7906 4.2078 -3.4662 20 14 3.2115 6.3802 -2.7857 21 1 1.8280 6.5209 -2.2648 22 1 4.1675 6.9810 -1.8211 23 1 3.3217 7.0784 -4.0917 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3635 0.5138 -0.8899 27 1 1.7209 -0.2701 1.9979 28 1 2.2657 -2.5844 -0.2310 29 1 3.0765 -3.7572 -2.2329 30 1 2.7287 -0.1273 -4.4905 31 1 -0.1690 1.0068 -3.0356 32 1 0.4579 2.6273 -3.4207 33 1 0.9598 1.2242 -4.3946 34 1 3.8472 1.8879 -2.2640 35 1 3.2261 1.9586 -3.9307 36 1 5.4537 4.8814 -3.6840 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131420374.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:37 Heat of formation + Delta-G solvation = -10.306129 kcal Electronic energy + Delta-G solvation = -19153.589465 eV Core-core repulsion = 16216.091976 eV Total energy + Delta-G solvation = -2937.497489 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.24008 -38.28983 -38.08695 -36.88664 -34.68585 -33.12894 -31.20464 -30.26961 -29.14227 -26.69086 -25.54478 -24.45907 -22.25950 -22.08898 -19.51522 -18.41462 -18.03772 -17.09226 -16.82703 -16.52957 -16.04592 -15.57687 -15.13688 -15.02443 -14.95863 -14.67189 -14.61730 -14.02504 -13.92311 -13.64547 -13.31655 -13.24762 -13.01146 -12.82762 -12.72241 -12.58885 -12.27421 -12.19114 -11.97599 -11.69551 -11.31914 -10.94823 -10.62168 -9.84572 -9.55539 -9.24808 -8.19484 -6.29531 -0.26606 0.31553 1.43425 1.44636 1.51680 1.57328 1.83809 2.41409 2.76112 2.83235 3.13725 3.19764 3.36882 3.88898 3.98731 4.16565 4.35887 4.42062 4.51652 4.57653 4.65379 4.80140 4.84371 4.95085 5.06658 5.10985 5.17284 5.24953 5.28243 5.32174 5.43943 5.57196 5.71340 5.81741 6.07656 6.15367 6.34325 6.73960 6.86075 7.02725 7.40367 8.91787 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.016352 B = 0.006641 C = 0.005242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.967054 B = 4215.094898 C = 5340.030608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.149 3.851 3 H 0.059 0.941 4 O -0.576 6.576 5 C -0.040 4.040 6 C -0.089 4.089 7 C -0.065 4.065 8 C -0.033 4.033 9 C 0.281 3.719 10 N -0.461 5.461 11 C -0.111 4.111 12 C 0.090 3.910 13 N -0.503 5.503 14 C 0.041 3.959 15 C 0.215 3.785 16 C -0.518 4.518 17 H 0.072 0.928 18 C 0.002 3.998 19 N -0.935 5.935 20 Si 0.968 3.032 21 H -0.258 1.258 22 H -0.282 1.282 23 H -0.283 1.283 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.397 0.603 28 H 0.163 0.837 29 H 0.164 0.836 30 H 0.112 0.888 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.015 0.985 34 H 0.000 1.000 35 H -0.031 1.031 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.786 -10.294 8.639 16.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.091 3.909 3 H 0.077 0.923 4 O -0.385 6.385 5 C -0.041 4.041 6 C -0.107 4.107 7 C -0.085 4.085 8 C -0.037 4.037 9 C -0.033 4.033 10 N -0.137 5.137 11 C -0.134 4.134 12 C -0.004 4.004 13 N -0.224 5.224 14 C -0.105 4.105 15 C 0.090 3.910 16 C -0.557 4.557 17 H 0.090 0.910 18 C -0.196 4.196 19 N -0.576 5.576 20 Si 0.793 3.207 21 H -0.181 1.181 22 H -0.208 1.208 23 H -0.209 1.209 24 H 0.087 0.913 25 H 0.095 0.905 26 H 0.080 0.920 27 H 0.248 0.752 28 H 0.181 0.819 29 H 0.182 0.818 30 H 0.130 0.870 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.034 0.966 34 H 0.018 0.982 35 H -0.013 1.013 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.934 -11.258 7.165 16.059 hybrid contribution 0.335 1.609 -0.580 1.743 sum -8.598 -9.649 6.584 14.505 Atomic orbital electron populations 1.22305 0.93606 1.02870 1.03333 1.20261 0.94025 0.94091 0.82551 0.92290 1.86375 1.77690 1.57856 1.16559 1.20007 0.96784 0.94243 0.93114 1.21091 0.97503 0.92952 0.99138 1.21426 0.96488 1.01091 0.89519 1.15901 1.06201 0.92289 0.89325 1.25880 0.92376 0.92399 0.92683 1.81213 1.10891 1.10392 1.11239 1.21692 0.98815 0.93494 0.99388 1.18818 0.98784 0.90200 0.92645 1.59828 1.08463 1.02209 1.51892 1.22329 0.92640 1.02695 0.92869 1.19425 0.87230 0.92324 0.92030 1.21472 1.00511 0.90934 1.42736 0.90992 1.25900 0.94715 1.04130 0.94903 1.70103 1.06342 1.35325 1.45829 0.85346 0.78816 0.78945 0.77580 1.18122 1.20758 1.20934 0.91311 0.90479 0.91980 0.75249 0.81935 0.81816 0.87002 0.89981 0.91143 0.96615 0.98215 1.01323 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.35 9.52 71.98 0.68 -2.66 16 2 C 0.15 3.86 3.48 29.85 0.10 3.97 16 3 H 0.06 1.91 7.61 -2.39 -0.02 1.89 16 4 O -0.58 -12.47 12.13 -148.98 -1.81 -14.28 16 5 C -0.04 -1.14 5.09 -19.68 -0.10 -1.24 16 6 C -0.09 -2.05 9.33 22.21 0.21 -1.84 16 7 C -0.07 -1.44 9.75 22.56 0.22 -1.22 16 8 C -0.03 -0.93 5.73 -21.38 -0.12 -1.05 16 9 C 0.28 8.52 15.33 88.33 1.35 9.87 16 10 N -0.46 -15.58 18.54 19.00 0.35 -15.23 16 11 C -0.11 -3.72 8.36 22.68 0.19 -3.53 16 12 C 0.09 3.09 4.66 38.17 0.18 3.27 16 13 N -0.50 -19.73 3.74 -724.55 -2.71 -22.45 16 14 C 0.04 1.42 9.20 127.69 1.17 2.60 16 15 C 0.21 10.85 4.30 85.56 0.37 11.21 16 16 C -0.52 -27.66 8.46 25.60 0.22 -27.44 16 17 H 0.07 3.68 7.12 -2.91 -0.02 3.66 16 18 C 0.00 0.09 5.46 84.65 0.46 0.55 16 19 N -0.94 -55.33 13.29 21.45 0.28 -55.04 16 20 Si 0.97 42.71 29.54 68.60 2.03 44.74 16 21 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 22 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 23 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 24 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.06 1.43 7.43 -2.39 -0.02 1.41 16 27 H 0.40 5.14 9.08 -74.05 -0.67 4.47 16 28 H 0.16 3.05 7.33 -2.92 -0.02 3.03 16 29 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 30 H 0.11 4.10 7.13 -2.91 -0.02 4.08 16 31 H 0.08 2.29 7.43 -2.39 -0.02 2.27 16 32 H 0.07 2.59 6.76 -2.39 -0.02 2.57 16 33 H 0.02 0.54 7.34 -2.39 -0.02 0.52 16 34 H 0.00 -0.02 8.06 -2.38 -0.02 -0.04 16 35 H -0.03 -1.71 7.47 -2.39 -0.02 -1.73 16 36 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -65.45 312.61 3.51 -61.94 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: 0.43 Total: 7.83 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: 4.94 Total: -7.51 kcal Atomic # 7 Polarization: -90.64 SS G_CDS: -2.08 Total: -92.72 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: -1.81 Total: -14.28 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -65.45 3.51 -61.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131420374.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.634 kcal (2) G-P(sol) polarization free energy of solvation -65.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds